data_2PV6 # _entry.id 2PV6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PV6 pdb_00002pv6 10.2210/pdb2pv6/pdb RCSB RCSB042808 ? ? WWPDB D_1000042808 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_spectrometer 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PV6 _pdbx_database_status.recvd_initial_deposition_date 2007-05-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sun, Z.-Y.J.' 1 'Oh, K.J.' 2 'Kim, M.' 3 'Reinherz, E.L.' 4 'Wagner, G.' 5 # _citation.id primary _citation.title 'HIV-1 broadly neutralizing antibody extracts its epitope from a kinked gp41 ectodomain region on the viral membrane' _citation.journal_abbrev Immunity _citation.journal_volume 28 _citation.page_first 52 _citation.page_last 63 _citation.year 2008 _citation.journal_id_ASTM IUNIEH _citation.country US _citation.journal_id_ISSN 1074-7613 _citation.journal_id_CSD 2048 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18191596 _citation.pdbx_database_id_DOI 10.1016/j.immuni.2007.11.018 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, Z.Y.' 1 ? primary 'Oh, K.J.' 2 ? primary 'Kim, M.' 3 ? primary 'Yu, J.' 4 ? primary 'Brusic, V.' 5 ? primary 'Song, L.' 6 ? primary 'Qiao, Z.' 7 ? primary 'Wang, J.H.' 8 ? primary 'Wagner, G.' 9 ? primary 'Reinherz, E.L.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Envelope glycoprotein' _entity.formula_weight 2929.330 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 662-683' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Env polyprotein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ELDKWASLWNWFNITNWLWYIK _entity_poly.pdbx_seq_one_letter_code_can ELDKWASLWNWFNITNWLWYIK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LEU n 1 3 ASP n 1 4 LYS n 1 5 TRP n 1 6 ALA n 1 7 SER n 1 8 LEU n 1 9 TRP n 1 10 ASN n 1 11 TRP n 1 12 PHE n 1 13 ASN n 1 14 ILE n 1 15 THR n 1 16 ASN n 1 17 TRP n 1 18 LEU n 1 19 TRP n 1 20 TYR n 1 21 ILE n 1 22 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene env _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HXB2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30a _entity_src_gen.plasmid_details 'peptide cleaved from N-terminal GB1-fusioned construct by CNBr' _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 662 662 GLU GLU A . n A 1 2 LEU 2 663 663 LEU LEU A . n A 1 3 ASP 3 664 664 ASP ASP A . n A 1 4 LYS 4 665 665 LYS LYS A . n A 1 5 TRP 5 666 666 TRP TRP A . n A 1 6 ALA 6 667 667 ALA ALA A . n A 1 7 SER 7 668 668 SER SER A . n A 1 8 LEU 8 669 669 LEU LEU A . n A 1 9 TRP 9 670 670 TRP TRP A . n A 1 10 ASN 10 671 671 ASN ASN A . n A 1 11 TRP 11 672 672 TRP TRP A . n A 1 12 PHE 12 673 673 PHE PHE A . n A 1 13 ASN 13 674 674 ASN ASN A . n A 1 14 ILE 14 675 675 ILE ILE A . n A 1 15 THR 15 676 676 THR THR A . n A 1 16 ASN 16 677 677 ASN ASN A . n A 1 17 TRP 17 678 678 TRP TRP A . n A 1 18 LEU 18 679 679 LEU LEU A . n A 1 19 TRP 19 680 680 TRP TRP A . n A 1 20 TYR 20 681 681 TYR TYR A . n A 1 21 ILE 21 682 682 ILE ILE A . n A 1 22 LYS 22 683 683 LYS LYS A . n # _cell.entry_id 2PV6 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PV6 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2PV6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2PV6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2PV6 _struct.title 'HIV-1 gp41 Membrane Proximal Ectodomain Region peptide in DPC micelle' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PV6 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'kinked helix, viral protein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENV_HV1H2 _struct_ref.pdbx_db_accession P04578 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ELDKWASLWNWFNITNWLWYIK _struct_ref.pdbx_align_begin 662 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PV6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04578 _struct_ref_seq.db_align_beg 662 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 683 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 662 _struct_ref_seq.pdbx_auth_seq_align_end 683 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 2 ? PHE A 12 ? LEU A 663 PHE A 673 1 ? 11 HELX_P HELX_P2 2 ASN A 13 ? LEU A 18 ? ASN A 674 LEU A 679 1 ? 6 HELX_P HELX_P3 3 TRP A 19 ? LYS A 22 ? TRP A 680 LYS A 683 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.45 2 1 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.12 3 2 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.46 4 2 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.12 5 3 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.45 6 3 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.11 7 4 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.52 8 4 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.13 9 5 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.45 10 5 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.11 11 6 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.53 12 6 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.14 13 7 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.45 14 7 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.12 15 8 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.44 16 8 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.12 17 9 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.46 18 9 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.10 19 10 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.52 20 10 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.13 21 11 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.45 22 11 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.11 23 12 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.52 24 12 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.13 25 13 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.52 26 13 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.12 27 14 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.46 28 14 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.12 29 15 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.46 30 15 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.12 31 16 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.45 32 16 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.11 33 17 O A ILE 675 ? ? HD1 A TRP 678 ? ? 1.51 34 17 O A ILE 675 ? ? CD1 A TRP 678 ? ? 2.12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 679 ? ? -55.79 -9.95 2 2 LEU A 679 ? ? -53.11 -8.80 3 3 LEU A 679 ? ? -52.44 -7.01 4 4 LEU A 679 ? ? -53.14 -9.24 5 5 LEU A 679 ? ? -51.99 -9.21 6 6 ASP A 664 ? ? -55.31 -175.40 7 6 LYS A 665 ? ? -45.23 -13.70 8 6 LEU A 679 ? ? -52.43 -8.74 9 7 LEU A 679 ? ? -54.45 -8.63 10 8 ASP A 664 ? ? -55.29 -175.26 11 8 LYS A 665 ? ? -44.64 -13.15 12 8 LEU A 679 ? ? -53.57 -8.47 13 9 ASP A 664 ? ? -55.65 -175.47 14 9 LYS A 665 ? ? -45.31 -13.12 15 9 LEU A 679 ? ? -53.44 -5.74 16 10 LEU A 679 ? ? -52.56 -9.07 17 11 PHE A 673 ? ? -86.92 45.22 18 11 LEU A 679 ? ? -52.76 -8.01 19 12 LEU A 663 ? ? 62.26 123.35 20 12 LEU A 679 ? ? -51.87 -9.11 21 13 LEU A 663 ? ? 54.03 102.38 22 13 LEU A 679 ? ? -52.05 -8.98 23 14 LEU A 663 ? ? 53.67 100.30 24 14 LEU A 679 ? ? -53.50 -7.23 25 15 LEU A 679 ? ? -54.56 -7.45 26 16 LEU A 679 ? ? -52.30 -8.79 27 17 LEU A 663 ? ? 56.47 112.77 # _pdbx_nmr_ensemble.entry_id 2PV6 _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 17 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2PV6 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1mM U-15N,13C MPER + 100mM d38 DPC, 90% H2O/10% D2O' '90% H2O/10% D2O' 2 '1mM U-15N MPER + 100mM d38 DPC, 90% H2O/10% D2O' '90% H2O/10% D2O' 3 '1mM unlabeled MPER + 100mM d38 DPC, 100% D2O' '100% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.6 _pdbx_nmr_exptl_sample_conditions.ionic_strength 'no salt' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 'triple resonance backbone experiments' 1 2 1 3D_13C-separated_NOESY 1 3 1 3D_15N-separated_NOESY 2 4 1 '2D NOESY' 3 5 1 HNHA 1 6 1 HNHB 1 7 1 '3D_15N-separated N(H)-NH NOESY' 2 # _pdbx_nmr_refine.entry_id 2PV6 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'The structures are based on a total of 331 NOE restraints, 10 hydrogen bond constraints, and 34 dihydral angle restraints.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing PROSA 6.0 Guntert 1 'data analysis' CARA 1.8.2 Keller 2 'structure solution' CYANA 2.1 Guntert 3 'structure solution' X-PLOR xplor-nih-2.9.7 'Brunger, Schwieters' 4 'data analysis' TALOS 2003.027.13.05 Cornilescu 5 refinement X-PLOR xplor-nih-2.9.7 'Brunger, Schwieters' 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLU N N N N 47 GLU CA C N S 48 GLU C C N N 49 GLU O O N N 50 GLU CB C N N 51 GLU CG C N N 52 GLU CD C N N 53 GLU OE1 O N N 54 GLU OE2 O N N 55 GLU OXT O N N 56 GLU H H N N 57 GLU H2 H N N 58 GLU HA H N N 59 GLU HB2 H N N 60 GLU HB3 H N N 61 GLU HG2 H N N 62 GLU HG3 H N N 63 GLU HE2 H N N 64 GLU HXT H N N 65 ILE N N N N 66 ILE CA C N S 67 ILE C C N N 68 ILE O O N N 69 ILE CB C N S 70 ILE CG1 C N N 71 ILE CG2 C N N 72 ILE CD1 C N N 73 ILE OXT O N N 74 ILE H H N N 75 ILE H2 H N N 76 ILE HA H N N 77 ILE HB H N N 78 ILE HG12 H N N 79 ILE HG13 H N N 80 ILE HG21 H N N 81 ILE HG22 H N N 82 ILE HG23 H N N 83 ILE HD11 H N N 84 ILE HD12 H N N 85 ILE HD13 H N N 86 ILE HXT H N N 87 LEU N N N N 88 LEU CA C N S 89 LEU C C N N 90 LEU O O N N 91 LEU CB C N N 92 LEU CG C N N 93 LEU CD1 C N N 94 LEU CD2 C N N 95 LEU OXT O N N 96 LEU H H N N 97 LEU H2 H N N 98 LEU HA H N N 99 LEU HB2 H N N 100 LEU HB3 H N N 101 LEU HG H N N 102 LEU HD11 H N N 103 LEU HD12 H N N 104 LEU HD13 H N N 105 LEU HD21 H N N 106 LEU HD22 H N N 107 LEU HD23 H N N 108 LEU HXT H N N 109 LYS N N N N 110 LYS CA C N S 111 LYS C C N N 112 LYS O O N N 113 LYS CB C N N 114 LYS CG C N N 115 LYS CD C N N 116 LYS CE C N N 117 LYS NZ N N N 118 LYS OXT O N N 119 LYS H H N N 120 LYS H2 H N N 121 LYS HA H N N 122 LYS HB2 H N N 123 LYS HB3 H N N 124 LYS HG2 H N N 125 LYS HG3 H N N 126 LYS HD2 H N N 127 LYS HD3 H N N 128 LYS HE2 H N N 129 LYS HE3 H N N 130 LYS HZ1 H N N 131 LYS HZ2 H N N 132 LYS HZ3 H N N 133 LYS HXT H N N 134 PHE N N N N 135 PHE CA C N S 136 PHE C C N N 137 PHE O O N N 138 PHE CB C N N 139 PHE CG C Y N 140 PHE CD1 C Y N 141 PHE CD2 C Y N 142 PHE CE1 C Y N 143 PHE CE2 C Y N 144 PHE CZ C Y N 145 PHE OXT O N N 146 PHE H H N N 147 PHE H2 H N N 148 PHE HA H N N 149 PHE HB2 H N N 150 PHE HB3 H N N 151 PHE HD1 H N N 152 PHE HD2 H N N 153 PHE HE1 H N N 154 PHE HE2 H N N 155 PHE HZ H N N 156 PHE HXT H N N 157 SER N N N N 158 SER CA C N S 159 SER C C N N 160 SER O O N N 161 SER CB C N N 162 SER OG O N N 163 SER OXT O N N 164 SER H H N N 165 SER H2 H N N 166 SER HA H N N 167 SER HB2 H N N 168 SER HB3 H N N 169 SER HG H N N 170 SER HXT H N N 171 THR N N N N 172 THR CA C N S 173 THR C C N N 174 THR O O N N 175 THR CB C N R 176 THR OG1 O N N 177 THR CG2 C N N 178 THR OXT O N N 179 THR H H N N 180 THR H2 H N N 181 THR HA H N N 182 THR HB H N N 183 THR HG1 H N N 184 THR HG21 H N N 185 THR HG22 H N N 186 THR HG23 H N N 187 THR HXT H N N 188 TRP N N N N 189 TRP CA C N S 190 TRP C C N N 191 TRP O O N N 192 TRP CB C N N 193 TRP CG C Y N 194 TRP CD1 C Y N 195 TRP CD2 C Y N 196 TRP NE1 N Y N 197 TRP CE2 C Y N 198 TRP CE3 C Y N 199 TRP CZ2 C Y N 200 TRP CZ3 C Y N 201 TRP CH2 C Y N 202 TRP OXT O N N 203 TRP H H N N 204 TRP H2 H N N 205 TRP HA H N N 206 TRP HB2 H N N 207 TRP HB3 H N N 208 TRP HD1 H N N 209 TRP HE1 H N N 210 TRP HE3 H N N 211 TRP HZ2 H N N 212 TRP HZ3 H N N 213 TRP HH2 H N N 214 TRP HXT H N N 215 TYR N N N N 216 TYR CA C N S 217 TYR C C N N 218 TYR O O N N 219 TYR CB C N N 220 TYR CG C Y N 221 TYR CD1 C Y N 222 TYR CD2 C Y N 223 TYR CE1 C Y N 224 TYR CE2 C Y N 225 TYR CZ C Y N 226 TYR OH O N N 227 TYR OXT O N N 228 TYR H H N N 229 TYR H2 H N N 230 TYR HA H N N 231 TYR HB2 H N N 232 TYR HB3 H N N 233 TYR HD1 H N N 234 TYR HD2 H N N 235 TYR HE1 H N N 236 TYR HE2 H N N 237 TYR HH H N N 238 TYR HXT H N N 239 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLU N CA sing N N 44 GLU N H sing N N 45 GLU N H2 sing N N 46 GLU CA C sing N N 47 GLU CA CB sing N N 48 GLU CA HA sing N N 49 GLU C O doub N N 50 GLU C OXT sing N N 51 GLU CB CG sing N N 52 GLU CB HB2 sing N N 53 GLU CB HB3 sing N N 54 GLU CG CD sing N N 55 GLU CG HG2 sing N N 56 GLU CG HG3 sing N N 57 GLU CD OE1 doub N N 58 GLU CD OE2 sing N N 59 GLU OE2 HE2 sing N N 60 GLU OXT HXT sing N N 61 ILE N CA sing N N 62 ILE N H sing N N 63 ILE N H2 sing N N 64 ILE CA C sing N N 65 ILE CA CB sing N N 66 ILE CA HA sing N N 67 ILE C O doub N N 68 ILE C OXT sing N N 69 ILE CB CG1 sing N N 70 ILE CB CG2 sing N N 71 ILE CB HB sing N N 72 ILE CG1 CD1 sing N N 73 ILE CG1 HG12 sing N N 74 ILE CG1 HG13 sing N N 75 ILE CG2 HG21 sing N N 76 ILE CG2 HG22 sing N N 77 ILE CG2 HG23 sing N N 78 ILE CD1 HD11 sing N N 79 ILE CD1 HD12 sing N N 80 ILE CD1 HD13 sing N N 81 ILE OXT HXT sing N N 82 LEU N CA sing N N 83 LEU N H sing N N 84 LEU N H2 sing N N 85 LEU CA C sing N N 86 LEU CA CB sing N N 87 LEU CA HA sing N N 88 LEU C O doub N N 89 LEU C OXT sing N N 90 LEU CB CG sing N N 91 LEU CB HB2 sing N N 92 LEU CB HB3 sing N N 93 LEU CG CD1 sing N N 94 LEU CG CD2 sing N N 95 LEU CG HG sing N N 96 LEU CD1 HD11 sing N N 97 LEU CD1 HD12 sing N N 98 LEU CD1 HD13 sing N N 99 LEU CD2 HD21 sing N N 100 LEU CD2 HD22 sing N N 101 LEU CD2 HD23 sing N N 102 LEU OXT HXT sing N N 103 LYS N CA sing N N 104 LYS N H sing N N 105 LYS N H2 sing N N 106 LYS CA C sing N N 107 LYS CA CB sing N N 108 LYS CA HA sing N N 109 LYS C O doub N N 110 LYS C OXT sing N N 111 LYS CB CG sing N N 112 LYS CB HB2 sing N N 113 LYS CB HB3 sing N N 114 LYS CG CD sing N N 115 LYS CG HG2 sing N N 116 LYS CG HG3 sing N N 117 LYS CD CE sing N N 118 LYS CD HD2 sing N N 119 LYS CD HD3 sing N N 120 LYS CE NZ sing N N 121 LYS CE HE2 sing N N 122 LYS CE HE3 sing N N 123 LYS NZ HZ1 sing N N 124 LYS NZ HZ2 sing N N 125 LYS NZ HZ3 sing N N 126 LYS OXT HXT sing N N 127 PHE N CA sing N N 128 PHE N H sing N N 129 PHE N H2 sing N N 130 PHE CA C sing N N 131 PHE CA CB sing N N 132 PHE CA HA sing N N 133 PHE C O doub N N 134 PHE C OXT sing N N 135 PHE CB CG sing N N 136 PHE CB HB2 sing N N 137 PHE CB HB3 sing N N 138 PHE CG CD1 doub Y N 139 PHE CG CD2 sing Y N 140 PHE CD1 CE1 sing Y N 141 PHE CD1 HD1 sing N N 142 PHE CD2 CE2 doub Y N 143 PHE CD2 HD2 sing N N 144 PHE CE1 CZ doub Y N 145 PHE CE1 HE1 sing N N 146 PHE CE2 CZ sing Y N 147 PHE CE2 HE2 sing N N 148 PHE CZ HZ sing N N 149 PHE OXT HXT sing N N 150 SER N CA sing N N 151 SER N H sing N N 152 SER N H2 sing N N 153 SER CA C sing N N 154 SER CA CB sing N N 155 SER CA HA sing N N 156 SER C O doub N N 157 SER C OXT sing N N 158 SER CB OG sing N N 159 SER CB HB2 sing N N 160 SER CB HB3 sing N N 161 SER OG HG sing N N 162 SER OXT HXT sing N N 163 THR N CA sing N N 164 THR N H sing N N 165 THR N H2 sing N N 166 THR CA C sing N N 167 THR CA CB sing N N 168 THR CA HA sing N N 169 THR C O doub N N 170 THR C OXT sing N N 171 THR CB OG1 sing N N 172 THR CB CG2 sing N N 173 THR CB HB sing N N 174 THR OG1 HG1 sing N N 175 THR CG2 HG21 sing N N 176 THR CG2 HG22 sing N N 177 THR CG2 HG23 sing N N 178 THR OXT HXT sing N N 179 TRP N CA sing N N 180 TRP N H sing N N 181 TRP N H2 sing N N 182 TRP CA C sing N N 183 TRP CA CB sing N N 184 TRP CA HA sing N N 185 TRP C O doub N N 186 TRP C OXT sing N N 187 TRP CB CG sing N N 188 TRP CB HB2 sing N N 189 TRP CB HB3 sing N N 190 TRP CG CD1 doub Y N 191 TRP CG CD2 sing Y N 192 TRP CD1 NE1 sing Y N 193 TRP CD1 HD1 sing N N 194 TRP CD2 CE2 doub Y N 195 TRP CD2 CE3 sing Y N 196 TRP NE1 CE2 sing Y N 197 TRP NE1 HE1 sing N N 198 TRP CE2 CZ2 sing Y N 199 TRP CE3 CZ3 doub Y N 200 TRP CE3 HE3 sing N N 201 TRP CZ2 CH2 doub Y N 202 TRP CZ2 HZ2 sing N N 203 TRP CZ3 CH2 sing Y N 204 TRP CZ3 HZ3 sing N N 205 TRP CH2 HH2 sing N N 206 TRP OXT HXT sing N N 207 TYR N CA sing N N 208 TYR N H sing N N 209 TYR N H2 sing N N 210 TYR CA C sing N N 211 TYR CA CB sing N N 212 TYR CA HA sing N N 213 TYR C O doub N N 214 TYR C OXT sing N N 215 TYR CB CG sing N N 216 TYR CB HB2 sing N N 217 TYR CB HB3 sing N N 218 TYR CG CD1 doub Y N 219 TYR CG CD2 sing Y N 220 TYR CD1 CE1 sing Y N 221 TYR CD1 HD1 sing N N 222 TYR CD2 CE2 doub Y N 223 TYR CD2 HD2 sing N N 224 TYR CE1 CZ doub Y N 225 TYR CE1 HE1 sing N N 226 TYR CE2 CZ sing Y N 227 TYR CE2 HE2 sing N N 228 TYR CZ OH sing N N 229 TYR OH HH sing N N 230 TYR OXT HXT sing N N 231 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AVANCE Bruker 750 ? 2 AVANCE Bruker 600 ? 3 AVANCE Bruker 500 ? 4 INOVA Varian 600 ? # _atom_sites.entry_id 2PV6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_