HEADER TRANSFERASE 10-MAY-07 2PVQ TITLE CRYSTAL STRUCTURE OF OCHROBACTRUM ANTHROPI GLUTATHIONE TRANSFERASE TITLE 2 CYS10ALA MUTANT WITH GLUTATHIONE BOUND AT THE H-SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROBACTRUM ANTHROPI; SOURCE 3 ORGANISM_TAXID: 529; SOURCE 4 GENE: GST; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBTAC1 KEYWDS XENOBIOTICS DETOXIFICATION, GLUTATHIONE, H-SITE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ALLOCATI,L.FEDERICI,M.MASULLI,B.FAVALORO,C.DI ILIO REVDAT 7 30-AUG-23 2PVQ 1 REMARK REVDAT 6 20-OCT-21 2PVQ 1 REMARK SEQADV REVDAT 5 14-DEC-11 2PVQ 1 HETATM REVDAT 4 13-JUL-11 2PVQ 1 VERSN REVDAT 3 24-FEB-09 2PVQ 1 VERSN REVDAT 2 09-SEP-08 2PVQ 1 JRNL REVDAT 1 15-JAN-08 2PVQ 0 JRNL AUTH N.ALLOCATI,L.FEDERICI,M.MASULLI,B.FAVALORO,C.DI ILIO JRNL TITL CYSTEINE 10 IS CRITICAL FOR THE ACTIVITY OF OCHROBACTRUM JRNL TITL 2 ANTHROPI GLUTATHIONE TRANSFERASE AND ITS MUTATION TO ALANINE JRNL TITL 3 CAUSES THE PREFERENTIAL BINDING OF GLUTATHIONE TO THE JRNL TITL 4 H-SITE. JRNL REF PROTEINS V. 71 16 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18076047 JRNL DOI 10.1002/PROT.21835 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1074 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.77000 REMARK 3 B22 (A**2) : 1.77000 REMARK 3 B33 (A**2) : -2.66000 REMARK 3 B12 (A**2) : 0.89000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.708 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1597 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1451 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2166 ; 1.303 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3378 ; 0.807 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 5.117 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1800 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 315 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 393 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1651 ; 0.250 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 862 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.245 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.333 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1003 ; 0.662 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1589 ; 1.093 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 594 ; 1.862 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 575 ; 2.899 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 48.0354 14.3434 56.2189 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.1218 REMARK 3 T33: 0.1160 T12: 0.0130 REMARK 3 T13: -0.0382 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.9949 L22: 3.8743 REMARK 3 L33: 5.0722 L12: -0.3243 REMARK 3 L13: -1.8521 L23: 3.5824 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: 0.0380 S13: 0.0118 REMARK 3 S21: 0.0249 S22: 0.0401 S23: -0.2377 REMARK 3 S31: 0.1236 S32: 0.2915 S33: -0.0470 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9580 18.4372 48.8094 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0847 REMARK 3 T33: 0.0630 T12: 0.0370 REMARK 3 T13: -0.0105 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 3.7890 L22: 5.7433 REMARK 3 L33: 3.2960 L12: 1.5853 REMARK 3 L13: -0.2516 L23: -0.5455 REMARK 3 S TENSOR REMARK 3 S11: 0.1658 S12: 0.0250 S13: 0.0217 REMARK 3 S21: -0.0026 S22: -0.1206 S23: 0.0513 REMARK 3 S31: 0.1544 S32: 0.2768 S33: -0.0452 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 50.2575 12.6205 59.9078 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1556 REMARK 3 T33: 0.1533 T12: 0.0043 REMARK 3 T13: -0.0155 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.9194 L22: 1.2265 REMARK 3 L33: 2.1319 L12: 0.0422 REMARK 3 L13: 0.4519 L23: -1.2364 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: -0.0490 S13: -0.0742 REMARK 3 S21: 0.0920 S22: -0.0187 S23: -0.1159 REMARK 3 S31: 0.0411 S32: 0.0733 S33: 0.0219 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2417 10.1302 67.7202 REMARK 3 T TENSOR REMARK 3 T11: 0.1200 T22: 0.1235 REMARK 3 T33: 0.1457 T12: -0.0227 REMARK 3 T13: -0.0479 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.1827 L22: 2.4395 REMARK 3 L33: -1.4902 L12: -2.8936 REMARK 3 L13: -2.2069 L23: -3.3099 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.4316 S13: 0.0093 REMARK 3 S21: 0.1910 S22: 0.0874 S23: 0.1738 REMARK 3 S31: 0.1196 S32: 0.1731 S33: -0.0461 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0720 17.7341 62.8484 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0721 REMARK 3 T33: 0.0826 T12: -0.0052 REMARK 3 T13: -0.0332 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.2304 L22: 0.9675 REMARK 3 L33: 2.9057 L12: -0.0915 REMARK 3 L13: 1.1019 L23: 0.2992 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.0975 S13: 0.0024 REMARK 3 S21: 0.0115 S22: -0.0298 S23: 0.0655 REMARK 3 S31: -0.0887 S32: 0.1275 S33: 0.0565 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8144 23.1721 54.0384 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: 0.0760 REMARK 3 T33: 0.0444 T12: -0.0004 REMARK 3 T13: -0.0064 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 3.1445 L22: 8.5137 REMARK 3 L33: 5.1637 L12: 3.8926 REMARK 3 L13: 0.3323 L23: -0.2021 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: -0.0398 S13: 0.0471 REMARK 3 S21: 0.1591 S22: -0.0051 S23: -0.1604 REMARK 3 S31: -0.0404 S32: 0.1086 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7274 30.3291 47.0607 REMARK 3 T TENSOR REMARK 3 T11: 0.0598 T22: 0.0510 REMARK 3 T33: 0.0736 T12: 0.0082 REMARK 3 T13: 0.0102 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 5.5845 L22: 2.2149 REMARK 3 L33: 5.0293 L12: 0.1127 REMARK 3 L13: -4.8186 L23: -0.3314 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: 0.1403 S13: 0.3970 REMARK 3 S21: 0.0147 S22: -0.1566 S23: 0.0265 REMARK 3 S31: -0.0497 S32: -0.1039 S33: 0.0392 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0406 13.6103 46.9326 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.0935 REMARK 3 T33: 0.0562 T12: -0.0107 REMARK 3 T13: 0.0010 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.0818 L22: 5.1428 REMARK 3 L33: 0.9436 L12: -1.8272 REMARK 3 L13: 0.1153 L23: -0.0061 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: 0.0995 S13: -0.0472 REMARK 3 S21: -0.0357 S22: -0.0498 S23: -0.0645 REMARK 3 S31: 0.0964 S32: 0.0339 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7499 -0.0838 43.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.1013 REMARK 3 T33: 0.0968 T12: 0.0049 REMARK 3 T13: 0.0011 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.0732 L22: 2.2355 REMARK 3 L33: 2.0823 L12: -0.3367 REMARK 3 L13: 0.4873 L23: -1.6047 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: -0.0802 S13: -0.0597 REMARK 3 S21: 0.0919 S22: 0.1132 S23: 0.0025 REMARK 3 S31: 0.0448 S32: -0.0187 S33: -0.0690 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8170 21.7501 35.8896 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.0781 REMARK 3 T33: 0.0915 T12: 0.0195 REMARK 3 T13: 0.0157 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.6358 L22: 0.9115 REMARK 3 L33: 4.7103 L12: 0.4373 REMARK 3 L13: 0.8236 L23: -1.2757 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.3154 S13: 0.0099 REMARK 3 S21: -0.1412 S22: 0.0331 S23: 0.1678 REMARK 3 S31: -0.0914 S32: 0.1555 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8648 10.1645 43.3629 REMARK 3 T TENSOR REMARK 3 T11: 0.0815 T22: 0.1098 REMARK 3 T33: 0.0968 T12: 0.0131 REMARK 3 T13: -0.0256 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.0867 L22: 8.5028 REMARK 3 L33: -0.1800 L12: -1.9829 REMARK 3 L13: -0.2552 L23: 0.4343 REMARK 3 S TENSOR REMARK 3 S11: 0.2005 S12: 0.1298 S13: -0.2109 REMARK 3 S21: -0.1529 S22: -0.2844 S23: 0.1649 REMARK 3 S31: 0.1440 S32: 0.0311 S33: 0.0839 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3088 0.8142 35.0834 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1192 REMARK 3 T33: 0.1210 T12: 0.0410 REMARK 3 T13: -0.0001 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 0.5574 L22: 4.9283 REMARK 3 L33: 2.3114 L12: -2.5710 REMARK 3 L13: -1.1752 L23: -1.5116 REMARK 3 S TENSOR REMARK 3 S11: -0.3187 S12: -0.3307 S13: 0.0044 REMARK 3 S21: 0.1270 S22: 0.2240 S23: -0.2237 REMARK 3 S31: -0.2023 S32: -0.1345 S33: 0.0947 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 46.1179 15.0444 38.7267 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1674 REMARK 3 T33: 0.1388 T12: 0.0275 REMARK 3 T13: 0.0111 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.2844 L22: 0.2193 REMARK 3 L33: -0.7006 L12: 0.2742 REMARK 3 L13: -0.2915 L23: 0.0155 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: 0.1454 S13: -0.1431 REMARK 3 S21: -0.0004 S22: 0.0173 S23: -0.1508 REMARK 3 S31: 0.1307 S32: 0.2572 S33: -0.0413 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20967 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.803 REMARK 200 RESOLUTION RANGE LOW (A) : 50.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 66.60 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: PDB ENTRY 2NTO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 100 MM TRIS REMARK 280 -HCL, 200 MM LITHIUM SULFATE, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.34100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.68200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.01150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 178.35250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.67050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.34100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 142.68200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 178.35250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.01150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.67050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 58.37300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 107.01150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A5418 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 23 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 65 120.31 82.95 REMARK 500 TYR A 175 61.89 -118.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 5204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NTO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OCHROBACTRUM ANTHROPI GLUTATHIONE TRANSFERASE DBREF 2PVQ A 1 201 UNP P81065 GST_OCHAN 1 201 SEQADV 2PVQ ALA A 10 UNP P81065 CYS 10 ENGINEERED MUTATION SEQRES 1 A 201 MET LYS LEU TYR TYR LYS VAL GLY ALA ALA SER LEU ALA SEQRES 2 A 201 PRO HIS ILE ILE LEU SER GLU ALA GLY LEU PRO TYR GLU SEQRES 3 A 201 LEU GLU ALA VAL ASP LEU LYS ALA LYS LYS THR ALA ASP SEQRES 4 A 201 GLY GLY ASP TYR PHE ALA VAL ASN PRO ARG GLY ALA VAL SEQRES 5 A 201 PRO ALA LEU GLU VAL LYS PRO GLY THR VAL ILE THR GLN SEQRES 6 A 201 ASN ALA ALA ILE LEU GLN TYR ILE GLY ASP HIS SER ASP SEQRES 7 A 201 VAL ALA ALA PHE LYS PRO ALA TYR GLY SER ILE GLU ARG SEQRES 8 A 201 ALA ARG LEU GLN GLU ALA LEU GLY PHE CYS SER ASP LEU SEQRES 9 A 201 HIS ALA ALA PHE SER GLY LEU PHE ALA PRO ASN LEU SER SEQRES 10 A 201 GLU GLU ALA ARG ALA GLY VAL ILE ALA ASN ILE ASN ARG SEQRES 11 A 201 ARG LEU GLY GLN LEU GLU ALA MET LEU SER ASP LYS ASN SEQRES 12 A 201 ALA TYR TRP LEU GLY ASP ASP PHE THR GLN PRO ASP ALA SEQRES 13 A 201 TYR ALA SER VAL ILE ILE GLY TRP GLY VAL GLY GLN LYS SEQRES 14 A 201 LEU ASP LEU SER ALA TYR PRO LYS ALA LEU LYS LEU ARG SEQRES 15 A 201 GLU ARG VAL LEU ALA ARG PRO ASN VAL GLN LYS ALA PHE SEQRES 16 A 201 LYS GLU GLU GLY LEU ASN HET SO4 A5001 5 HET SO4 A5002 5 HET GSH A5204 20 HETNAM SO4 SULFATE ION HETNAM GSH GLUTATHIONE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GSH C10 H17 N3 O6 S FORMUL 5 HOH *215(H2 O) HELIX 1 1 SER A 11 GLY A 22 1 12 HELIX 2 2 ASP A 42 VAL A 46 5 5 HELIX 3 3 GLN A 65 HIS A 76 1 12 HELIX 4 4 VAL A 79 LYS A 83 5 5 HELIX 5 5 SER A 88 GLY A 110 1 23 HELIX 6 6 LEU A 111 ALA A 113 5 3 HELIX 7 7 SER A 117 LEU A 139 1 23 HELIX 8 8 THR A 152 GLN A 168 1 17 HELIX 9 9 TYR A 175 ALA A 187 1 13 HELIX 10 10 ARG A 188 GLU A 198 1 11 SHEET 1 A 4 GLU A 26 ALA A 29 0 SHEET 2 A 4 LYS A 2 TYR A 5 1 N LEU A 3 O GLU A 26 SHEET 3 A 4 ALA A 54 LYS A 58 -1 O ALA A 54 N TYR A 4 SHEET 4 A 4 THR A 61 THR A 64 -1 O THR A 61 N LYS A 58 CISPEP 1 VAL A 52 PRO A 53 0 -0.89 SITE 1 AC1 5 THR A 61 ILE A 89 ARG A 93 HOH A5382 SITE 2 AC1 5 HOH A5387 SITE 1 AC2 5 LYS A 180 ARG A 184 HOH A5298 HOH A5330 SITE 2 AC2 5 HOH A5349 SITE 1 AC3 17 VAL A 7 GLY A 8 ALA A 9 ALA A 10 SITE 2 AC3 17 HIS A 105 SER A 109 PHE A 112 TRP A 164 SITE 3 AC3 17 HOH A5238 HOH A5295 HOH A5307 HOH A5316 SITE 4 AC3 17 HOH A5331 HOH A5347 HOH A5369 HOH A5380 SITE 5 AC3 17 HOH A5391 CRYST1 58.373 58.373 214.023 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017131 0.009891 0.000000 0.00000 SCALE2 0.000000 0.019781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004672 0.00000