HEADER UNKNOWN FUNCTION 10-MAY-07 2PW0 TITLE CRYSTAL STRUCTURE OF TRANS-ACONITATE BOUND TO METHYLACONITATE TITLE 2 ISOMERASE PRPF FROM SHEWANELLA ONEIDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRPF METHYLACONITATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 GENE: PRPF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPRP196 KEYWDS PROPIONATE CATABOLISM, DIAMINOPIMELATE EPIMERASE LIKE, ACONITATE KEYWDS 2 BINDING, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.S.GARVEY,I.R.RAYMENT REVDAT 6 21-FEB-24 2PW0 1 REMARK REVDAT 5 18-OCT-17 2PW0 1 REMARK REVDAT 4 13-JUL-11 2PW0 1 VERSN REVDAT 3 24-FEB-09 2PW0 1 VERSN REVDAT 2 30-OCT-07 2PW0 1 JRNL REVDAT 1 21-AUG-07 2PW0 0 JRNL AUTH G.S.GARVEY,C.J.ROCCO,J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL THE THREE-DIMENSIONAL CRYSTAL STRUCTURE OF THE PRPF PROTEIN JRNL TITL 2 OF SHEWANELLA ONEIDENSIS COMPLEXED WITH TRANS-ACONITATE: JRNL TITL 3 INSIGHTS INTO ITS BIOLOGICAL FUNCTION. JRNL REF PROTEIN SCI. V. 16 1274 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17567742 JRNL DOI 10.1110/PS.072801907 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 98622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6264 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 320 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.662 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5490 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7465 ; 1.293 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 734 ; 5.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;36.396 ;24.126 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 834 ;11.639 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;10.417 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 866 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4168 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2698 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3807 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 716 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 111 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 60 ; 0.112 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3690 ; 0.689 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5796 ; 1.040 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1979 ; 1.691 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1661 ; 2.537 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000042835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .964107 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 463390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 76.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% METHYL ETHER POLY(ETHYLENEGLYCOL) REMARK 280 5000 BUFFERED WITH N-(2-HYDROXYETHYL)-PIPERAZINE-N9-2- REMARK 280 ETHANESULFONIC ACID (HEPES) BUFFER (100 MM, PH 7.5 AT 25 C)., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.02700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER. THERE IS ONE REMARK 300 HOMODIMER IN THE ASYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 51.87900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 ASP A 188 REMARK 465 ASP A 189 REMARK 465 GLY A 190 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 188 REMARK 465 ASP B 189 REMARK 465 GLY B 190 REMARK 465 GLU B 191 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 465 LEU B 205 REMARK 465 GLU B 206 REMARK 465 VAL B 207 REMARK 465 PRO B 208 REMARK 465 GLY B 209 REMARK 465 ILE B 210 REMARK 465 GLY B 211 REMARK 465 ARG B 212 REMARK 465 ASN B 247 REMARK 465 ALA B 248 REMARK 465 ALA B 249 REMARK 465 LEU B 250 REMARK 465 ALA B 251 REMARK 465 LYS B 252 REMARK 465 PHE B 253 REMARK 465 GLU B 254 REMARK 465 THR B 255 REMARK 465 ILE B 256 REMARK 465 ARG B 257 REMARK 465 ALA B 258 REMARK 465 HIS B 259 REMARK 465 GLY B 260 REMARK 465 ALA B 261 REMARK 465 LEU B 262 REMARK 465 ARG B 263 REMARK 465 MET B 264 REMARK 465 GLY B 265 REMARK 465 LEU B 266 REMARK 465 ILE B 267 REMARK 465 LYS B 268 REMARK 465 HIS B 269 REMARK 465 ILE B 270 REMARK 465 ASP B 271 REMARK 465 GLU B 272 REMARK 465 ALA B 273 REMARK 465 ALA B 274 REMARK 465 SER B 275 REMARK 465 ARG B 276 REMARK 465 GLN B 277 REMARK 465 HIS B 278 REMARK 465 THR B 279 REMARK 465 PRO B 280 REMARK 465 SER B 312 REMARK 465 MET B 313 REMARK 465 GLY B 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 NZ REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 LYS A 98 CE NZ REMARK 470 ASP A 187 C O CG OD1 OD2 REMARK 470 CYS A 194 CA CB SG REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 ARG A 212 NE CZ NH1 NH2 REMARK 470 LYS A 252 NZ REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 SER A 275 OG REMARK 470 LYS A 297 CE NZ REMARK 470 LEU B 5 N REMARK 470 LYS B 98 NZ REMARK 470 ILE B 124 CD1 REMARK 470 ASP B 187 CG OD1 OD2 REMARK 470 CYS B 194 SG REMARK 470 PHE B 213 N CA CB CG CD1 CD2 CE1 REMARK 470 PHE B 213 CE2 CZ REMARK 470 ASN B 214 CG OD1 ND2 REMARK 470 ASN B 219 OD1 ND2 REMARK 470 LEU B 232 CD1 CD2 REMARK 470 LYS B 289 CE NZ REMARK 470 LYS B 297 CD CE NZ REMARK 470 GLU B 302 CG CD OE1 OE2 REMARK 470 GLU B 369 CB CG CD OE1 OE2 REMARK 470 ASN B 370 CG OD1 ND2 REMARK 470 GLU B 372 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 389 O HOH B 2265 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 385 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 385 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 385 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 385 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 72.00 -104.51 REMARK 500 ALA A 319 -113.29 -143.19 REMARK 500 ARG A 382 -157.70 -128.37 REMARK 500 SER B 72 71.43 -114.28 REMARK 500 ASN B 214 127.20 -37.85 REMARK 500 ALA B 319 -115.05 -144.98 REMARK 500 ARG B 382 -157.88 -137.42 REMARK 500 ARG B 382 -167.21 -127.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2045 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2046 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2047 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2048 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2049 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2050 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRC A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRC B 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PVZ RELATED DB: PDB DBREF 2PW0 A 1 397 UNP Q8EJW4 Q8EJW4_SHEON 1 397 DBREF 2PW0 B 1 397 UNP Q8EJW4 Q8EJW4_SHEON 1 397 SEQRES 1 A 397 MET SER ASN LYS LEU PHE PRO PRO GLN ILE LYS VAL ALA SEQRES 2 A 397 ALA THR TYR MET ARG GLY GLY THR SER LYS GLY VAL PHE SEQRES 3 A 397 PHE ARG LEU GLN ASP LEU PRO GLU ALA ALA GLN VAL PRO SEQRES 4 A 397 GLY PRO ALA ARG ASP ALA LEU LEU LEU ARG VAL ILE GLY SEQRES 5 A 397 SER PRO ASP PRO TYR ALA LYS GLN ILE ASP GLY MET GLY SEQRES 6 A 397 GLY ALA THR SER SER THR SER LYS THR VAL ILE LEU SER SEQRES 7 A 397 HIS SER SER LYS ALA ASN HIS ASP VAL ASP TYR LEU PHE SEQRES 8 A 397 GLY GLN VAL SER ILE ASP LYS PRO PHE VAL ASP TRP SER SEQRES 9 A 397 GLY ASN CYS GLY ASN LEU THR ALA ALA VAL GLY ALA PHE SEQRES 10 A 397 ALA ILE SER ASN GLY LEU ILE ASP ALA ALA ARG ILE PRO SEQRES 11 A 397 ARG ASN GLY VAL CYS THR VAL ARG ILE TRP GLN ALA ASN SEQRES 12 A 397 ILE GLY LYS THR ILE ILE ALA HIS VAL PRO ILE THR ASP SEQRES 13 A 397 GLY ALA VAL GLN GLU THR GLY ASP PHE GLU LEU ASP GLY SEQRES 14 A 397 VAL THR PHE PRO ALA ALA GLU VAL GLN ILE GLU PHE MET SEQRES 15 A 397 ASN PRO ALA ALA ASP ASP ASP GLY GLU GLY GLY CYS MET SEQRES 16 A 397 PHE PRO THR GLY ASN LEU VAL ASP VAL LEU GLU VAL PRO SEQRES 17 A 397 GLY ILE GLY ARG PHE ASN ALA THR MET ILE ASN ALA GLY SEQRES 18 A 397 ILE PRO THR ILE PHE ILE ASN ALA GLU ASP LEU GLY TYR SEQRES 19 A 397 THR GLY THR GLU LEU GLN ASP ASP ILE ASN SER ASP ASN SEQRES 20 A 397 ALA ALA LEU ALA LYS PHE GLU THR ILE ARG ALA HIS GLY SEQRES 21 A 397 ALA LEU ARG MET GLY LEU ILE LYS HIS ILE ASP GLU ALA SEQRES 22 A 397 ALA SER ARG GLN HIS THR PRO LYS ILE ALA PHE VAL ALA SEQRES 23 A 397 PRO PRO LYS SER TYR ALA SER SER SER GLY LYS THR VAL SEQRES 24 A 397 ALA ALA GLU ASP VAL ASP LEU LEU VAL ARG ALA LEU SER SEQRES 25 A 397 MET GLY LYS LEU HIS HIS ALA MET MET GLY THR ALA ALA SEQRES 26 A 397 VAL ALA ILE GLY THR ALA ALA ALA ILE PRO GLY THR LEU SEQRES 27 A 397 VAL ASN LEU ALA ALA GLY GLY GLY GLU LYS GLU ALA VAL SEQRES 28 A 397 ARG PHE GLY HIS PRO SER GLY THR LEU ARG VAL GLY ALA SEQRES 29 A 397 GLN ALA VAL GLN GLU ASN GLY GLU TRP THR VAL ILE LYS SEQRES 30 A 397 ALA ILE MET SER ARG SER ALA ARG VAL LEU MET GLU GLY SEQRES 31 A 397 PHE VAL ARG VAL PRO LYS PRO SEQRES 1 B 397 MET SER ASN LYS LEU PHE PRO PRO GLN ILE LYS VAL ALA SEQRES 2 B 397 ALA THR TYR MET ARG GLY GLY THR SER LYS GLY VAL PHE SEQRES 3 B 397 PHE ARG LEU GLN ASP LEU PRO GLU ALA ALA GLN VAL PRO SEQRES 4 B 397 GLY PRO ALA ARG ASP ALA LEU LEU LEU ARG VAL ILE GLY SEQRES 5 B 397 SER PRO ASP PRO TYR ALA LYS GLN ILE ASP GLY MET GLY SEQRES 6 B 397 GLY ALA THR SER SER THR SER LYS THR VAL ILE LEU SER SEQRES 7 B 397 HIS SER SER LYS ALA ASN HIS ASP VAL ASP TYR LEU PHE SEQRES 8 B 397 GLY GLN VAL SER ILE ASP LYS PRO PHE VAL ASP TRP SER SEQRES 9 B 397 GLY ASN CYS GLY ASN LEU THR ALA ALA VAL GLY ALA PHE SEQRES 10 B 397 ALA ILE SER ASN GLY LEU ILE ASP ALA ALA ARG ILE PRO SEQRES 11 B 397 ARG ASN GLY VAL CYS THR VAL ARG ILE TRP GLN ALA ASN SEQRES 12 B 397 ILE GLY LYS THR ILE ILE ALA HIS VAL PRO ILE THR ASP SEQRES 13 B 397 GLY ALA VAL GLN GLU THR GLY ASP PHE GLU LEU ASP GLY SEQRES 14 B 397 VAL THR PHE PRO ALA ALA GLU VAL GLN ILE GLU PHE MET SEQRES 15 B 397 ASN PRO ALA ALA ASP ASP ASP GLY GLU GLY GLY CYS MET SEQRES 16 B 397 PHE PRO THR GLY ASN LEU VAL ASP VAL LEU GLU VAL PRO SEQRES 17 B 397 GLY ILE GLY ARG PHE ASN ALA THR MET ILE ASN ALA GLY SEQRES 18 B 397 ILE PRO THR ILE PHE ILE ASN ALA GLU ASP LEU GLY TYR SEQRES 19 B 397 THR GLY THR GLU LEU GLN ASP ASP ILE ASN SER ASP ASN SEQRES 20 B 397 ALA ALA LEU ALA LYS PHE GLU THR ILE ARG ALA HIS GLY SEQRES 21 B 397 ALA LEU ARG MET GLY LEU ILE LYS HIS ILE ASP GLU ALA SEQRES 22 B 397 ALA SER ARG GLN HIS THR PRO LYS ILE ALA PHE VAL ALA SEQRES 23 B 397 PRO PRO LYS SER TYR ALA SER SER SER GLY LYS THR VAL SEQRES 24 B 397 ALA ALA GLU ASP VAL ASP LEU LEU VAL ARG ALA LEU SER SEQRES 25 B 397 MET GLY LYS LEU HIS HIS ALA MET MET GLY THR ALA ALA SEQRES 26 B 397 VAL ALA ILE GLY THR ALA ALA ALA ILE PRO GLY THR LEU SEQRES 27 B 397 VAL ASN LEU ALA ALA GLY GLY GLY GLU LYS GLU ALA VAL SEQRES 28 B 397 ARG PHE GLY HIS PRO SER GLY THR LEU ARG VAL GLY ALA SEQRES 29 B 397 GLN ALA VAL GLN GLU ASN GLY GLU TRP THR VAL ILE LYS SEQRES 30 B 397 ALA ILE MET SER ARG SER ALA ARG VAL LEU MET GLU GLY SEQRES 31 B 397 PHE VAL ARG VAL PRO LYS PRO HET EDO A2046 4 HET EDO A2047 4 HET EDO A2048 4 HET TRC A2001 12 HET EDO B2045 4 HET EDO B2049 4 HET EDO B2050 4 HET TRC B2002 12 HETNAM EDO 1,2-ETHANEDIOL HETNAM TRC TRICARBALLYLIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 6 TRC 2(C6 H8 O6) FORMUL 11 HOH *880(H2 O) HELIX 1 1 GLN A 30 LEU A 32 5 3 HELIX 2 2 PRO A 33 GLN A 37 5 5 HELIX 3 3 GLY A 40 GLY A 52 1 13 HELIX 4 4 LEU A 110 ASN A 121 1 12 HELIX 5 5 ASP A 125 ILE A 129 5 5 HELIX 6 6 GLU A 230 GLY A 233 5 4 HELIX 7 7 LEU A 239 ASN A 244 1 6 HELIX 8 8 ASP A 246 MET A 264 1 19 HELIX 9 9 HIS A 269 ARG A 276 5 8 HELIX 10 10 ALA A 300 VAL A 304 5 5 HELIX 11 11 MET A 321 ALA A 333 1 13 HELIX 12 12 THR A 337 ALA A 343 1 7 HELIX 13 13 GLN B 30 LEU B 32 5 3 HELIX 14 14 PRO B 33 GLN B 37 5 5 HELIX 15 15 GLY B 40 GLY B 52 1 13 HELIX 16 16 LEU B 110 ASN B 121 1 12 HELIX 17 17 ASP B 125 ILE B 129 5 5 HELIX 18 18 GLU B 230 GLY B 233 5 4 HELIX 19 19 LEU B 239 ILE B 243 5 5 HELIX 20 20 ALA B 300 VAL B 304 5 5 HELIX 21 21 MET B 321 ALA B 333 1 13 HELIX 22 22 THR B 337 ALA B 343 1 7 SHEET 1 A 6 ALA A 384 VAL A 394 0 SHEET 2 A 6 ILE A 10 GLY A 19 -1 N TYR A 16 O MET A 388 SHEET 3 A 6 SER A 22 ARG A 28 -1 O PHE A 26 N THR A 15 SHEET 4 A 6 LYS A 73 HIS A 79 1 O LEU A 77 N PHE A 27 SHEET 5 A 6 VAL A 87 VAL A 94 -1 O ASP A 88 N SER A 78 SHEET 6 A 6 VAL A 101 ASP A 102 -1 O ASP A 102 N GLN A 93 SHEET 1 B 5 VAL A 101 ASP A 102 0 SHEET 2 B 5 VAL A 87 VAL A 94 -1 N GLN A 93 O ASP A 102 SHEET 3 B 5 GLY A 133 GLN A 141 1 O TRP A 140 N VAL A 87 SHEET 4 B 5 LYS A 146 THR A 155 -1 O ALA A 150 N VAL A 137 SHEET 5 B 5 ALA A 158 VAL A 159 -1 O ALA A 158 N THR A 155 SHEET 1 C 8 ALA A 158 VAL A 159 0 SHEET 2 C 8 LYS A 146 THR A 155 -1 N THR A 155 O ALA A 158 SHEET 3 C 8 VAL A 177 MET A 182 -1 O GLU A 180 N ILE A 149 SHEET 4 C 8 GLU A 372 ARG A 382 -1 O MET A 380 N ILE A 179 SHEET 5 C 8 GLY A 358 GLU A 369 -1 N GLY A 363 O ILE A 379 SHEET 6 C 8 ALA A 350 HIS A 355 -1 N PHE A 353 O LEU A 360 SHEET 7 C 8 LEU A 306 SER A 312 1 N VAL A 308 O GLY A 354 SHEET 8 C 8 LYS A 315 LEU A 316 -1 O LYS A 315 N SER A 312 SHEET 1 D 6 LYS A 315 LEU A 316 0 SHEET 2 D 6 LEU A 306 SER A 312 -1 N SER A 312 O LYS A 315 SHEET 3 D 6 LYS A 281 ALA A 286 -1 N ALA A 286 O LEU A 307 SHEET 4 D 6 PRO A 223 ASN A 228 1 N ILE A 225 O LYS A 281 SHEET 5 D 6 GLY A 211 ASN A 219 -1 N THR A 216 O PHE A 226 SHEET 6 D 6 ASP A 203 VAL A 207 -1 N LEU A 205 O PHE A 213 SHEET 1 E 2 TYR A 291 ALA A 292 0 SHEET 2 E 2 THR A 298 VAL A 299 -1 O VAL A 299 N TYR A 291 SHEET 1 F12 VAL B 101 ASP B 102 0 SHEET 2 F12 VAL B 87 VAL B 94 -1 N GLN B 93 O ASP B 102 SHEET 3 F12 GLY B 133 GLN B 141 1 O TRP B 140 N TYR B 89 SHEET 4 F12 LYS B 146 THR B 155 -1 O ALA B 150 N VAL B 137 SHEET 5 F12 VAL B 177 MET B 182 -1 O GLU B 180 N ILE B 149 SHEET 6 F12 GLU B 372 ARG B 382 -1 O ALA B 378 N PHE B 181 SHEET 7 F12 GLY B 358 GLU B 369 -1 N GLY B 363 O ILE B 379 SHEET 8 F12 ALA B 350 HIS B 355 -1 N HIS B 355 O GLY B 358 SHEET 9 F12 LEU B 306 LEU B 311 1 N VAL B 308 O GLY B 354 SHEET 10 F12 ILE B 282 ALA B 286 -1 N ALA B 286 O LEU B 307 SHEET 11 F12 PRO B 223 ASN B 228 1 N ILE B 225 O ALA B 283 SHEET 12 F12 ALA B 215 ASN B 219 -1 N ILE B 218 O THR B 224 SHEET 1 G 8 ALA B 158 VAL B 159 0 SHEET 2 G 8 LYS B 146 THR B 155 -1 N THR B 155 O ALA B 158 SHEET 3 G 8 GLY B 133 GLN B 141 -1 N VAL B 137 O ALA B 150 SHEET 4 G 8 VAL B 87 VAL B 94 1 N TYR B 89 O TRP B 140 SHEET 5 G 8 LYS B 73 HIS B 79 -1 N SER B 78 O ASP B 88 SHEET 6 G 8 SER B 22 ARG B 28 1 N PHE B 27 O LEU B 77 SHEET 7 G 8 ILE B 10 GLY B 19 -1 N THR B 15 O PHE B 26 SHEET 8 G 8 ALA B 384 VAL B 394 -1 O MET B 388 N TYR B 16 SHEET 1 H 2 TYR B 291 ALA B 292 0 SHEET 2 H 2 THR B 298 VAL B 299 -1 O VAL B 299 N TYR B 291 CISPEP 1 SER A 53 PRO A 54 0 -7.34 CISPEP 2 THR A 279 PRO A 280 0 -4.95 CISPEP 3 SER B 53 PRO B 54 0 -8.06 SITE 1 AC1 7 ILE B 144 ASN B 219 ALA B 220 ILE B 222 SITE 2 AC1 7 PRO B 223 HOH B2080 HOH B2159 SITE 1 AC2 7 ALA A 333 GLU A 347 LYS A 348 GLU A 349 SITE 2 AC2 7 GLN A 365 ALA A 366 TRP A 373 SITE 1 AC3 5 ASN A 219 ALA A 220 PRO A 223 HOH A2066 SITE 2 AC3 5 HOH A2124 SITE 1 AC4 4 GLU A 166 ASP A 168 ARG A 352 HOH A2193 SITE 1 AC5 4 PRO B 33 GLU B 34 HOH B2112 HOH B2228 SITE 1 AC6 7 ALA B 333 GLU B 347 LYS B 348 GLU B 349 SITE 2 AC6 7 ALA B 364 GLN B 365 ALA B 366 SITE 1 AC7 17 SER A 22 SER A 69 SER A 70 LYS A 73 SITE 2 AC7 17 CYS A 107 ASN A 109 HIS A 278 LYS A 281 SITE 3 AC7 17 SER A 312 MET A 313 HIS A 317 MET A 321 SITE 4 AC7 17 GLY A 322 HOH A2511 HOH A2512 HOH A2513 SITE 5 AC7 17 HOH A2514 SITE 1 AC8 13 SER B 22 SER B 69 SER B 70 LYS B 73 SITE 2 AC8 13 ASN B 109 LYS B 281 HIS B 317 MET B 321 SITE 3 AC8 13 GLY B 322 HOH B2457 HOH B2459 HOH B2460 SITE 4 AC8 13 HOH B2461 CRYST1 51.879 104.054 78.212 90.00 103.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019276 0.000000 0.004752 0.00000 SCALE2 0.000000 0.009610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013169 0.00000