HEADER OXIDOREDUCTASE 11-MAY-07 2PWJ TITLE STRUCTURE OF A MITOCHONDRIAL TYPE II PEROXIREDOXIN FROM PISUM SATIVUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL PEROXIREDOXIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 1.11.1.15; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PISUM SATIVUM; SOURCE 3 ORGANISM_COMMON: GARDEN PEA; SOURCE 4 GENE: PRX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3D_PRX KEYWDS ALPHA AND BETA PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.LOPEZ-JARAMILLO,S.BARRANCO-MEDINA,J.J.LAZARO,F.SANTOYO-GONZALEZ REVDAT 3 21-FEB-24 2PWJ 1 REMARK REVDAT 2 24-FEB-09 2PWJ 1 VERSN REVDAT 1 27-MAY-08 2PWJ 0 JRNL AUTH F.J.LOPEZ-JARAMILLO,S.BARRANCO-MEDINA,J.J.LAZARO, JRNL AUTH 2 F.SANTOYO-GONZALEZ JRNL TITL STRUCTURE OF A MITOCHONDRIAL TYPE II PEROXIREDOXIN FROM JRNL TITL 2 PISUM SATIVUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BARRANCO-MEDINA,F.J.LOPEZ-JARAMILLO,L.BERNIER-VILLAMOR, REMARK 1 AUTH 2 F.SEVILLA,J.J.LAZARO REMARK 1 TITL CLONING, OVEREXPRESSION, PURIFICATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES OF A MITOCHONDRIAL TYPE II REMARK 1 TITL 3 PEROXIREDOXIN FROM PISUM SATIVUM REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 695 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 25728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2544 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2062 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 251 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7476 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.53000 REMARK 3 B22 (A**2) : -5.66000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : -4.01000 REMARK 3 B13 (A**2) : 5.77000 REMARK 3 B23 (A**2) : -0.18000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.57 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.970 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.650 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.410 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.170 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 14.91 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CROSS-VALIDATION METHOD: REMARK 3 -> "THROUGHOUT" REMARK 3 FREE R VALUE TEST SET SELECTION CRITERIA: REMARK 3 -> "RANDOM" REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 POLYMER 7476 NONPOLYMER 0 SOLVENT 0 REMARK 3 CNS PARAMETER FILES: REMARK 3 CNS_TOPPAR/PROTEIN_REP.PARAM REMARK 3 CNS_TOPPAR/CARBOHYDRATE.PARAM REMARK 3 CNS TOPOLOGY FILES: REMARK 3 CNS_TOPPAR/PROTEIN.TOP REMARK 3 CNS_TOPPAR/CARBOHYDRATE.TOP REMARK 4 REMARK 4 2PWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000042854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MICROSTAR MICRO-FOCUS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT, XPREP REMARK 200 DATA SCALING SOFTWARE : SAINT V7.12A REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 71.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 65.8 REMARK 200 DATA REDUNDANCY : 3.080 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 15.4160 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.07800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MODEL GENERATED BY EASYPED3D WEB SERVER 1.0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000, CITRATE, NACL, DTT, 2 REMARK 280 -PROPANOL, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY SEEMS TO BE A DIMER ALTHOUG REMARK 300 HEXAMERIC FORMS HAVE BEEN DETECTED. THIS POINT IS BEIND ELUCIDATED REMARK 300 BY BIOCHEMICAL EXPERIMENTS AND ANALYSIS OF THIS STRUCTURE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 ILE A 9 REMARK 465 ALA B 1 REMARK 465 LYS B 2 REMARK 465 VAL B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 465 ILE B 9 REMARK 465 ALA C 1 REMARK 465 LYS C 2 REMARK 465 VAL C 3 REMARK 465 ALA C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 THR C 7 REMARK 465 ASP C 8 REMARK 465 ALA D 1 REMARK 465 LYS D 2 REMARK 465 VAL D 3 REMARK 465 ALA D 4 REMARK 465 THR D 5 REMARK 465 GLY D 6 REMARK 465 THR D 7 REMARK 465 ASP D 8 REMARK 465 ALA E 1 REMARK 465 LYS E 2 REMARK 465 VAL E 3 REMARK 465 ALA E 4 REMARK 465 THR E 5 REMARK 465 GLY E 6 REMARK 465 THR E 7 REMARK 465 ASP E 8 REMARK 465 ALA F 1 REMARK 465 LYS F 2 REMARK 465 VAL F 3 REMARK 465 ALA F 4 REMARK 465 THR F 5 REMARK 465 GLY F 6 REMARK 465 THR F 7 REMARK 465 ASP F 8 REMARK 465 ILE F 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 N - CA - C ANGL. DEV. = 24.1 DEGREES REMARK 500 GLU A 26 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP B 25 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP B 25 N - CA - C ANGL. DEV. = 24.7 DEGREES REMARK 500 ARG B 134 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP C 25 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP C 25 N - CA - C ANGL. DEV. = 23.3 DEGREES REMARK 500 ARG C 134 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 134 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG C 137 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 137 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP D 25 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP D 25 N - CA - C ANGL. DEV. = 25.1 DEGREES REMARK 500 ARG D 134 CD - NE - CZ ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG D 134 NE - CZ - NH1 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG D 134 NE - CZ - NH2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG E 22 CD - NE - CZ ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG E 22 NE - CZ - NH1 ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG E 22 NE - CZ - NH2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP E 25 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP E 25 N - CA - C ANGL. DEV. = 24.6 DEGREES REMARK 500 ARG E 134 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG E 134 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP F 25 N - CA - C ANGL. DEV. = 22.8 DEGREES REMARK 500 ASP F 25 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 GLU F 26 C - N - CA ANGL. DEV. = 40.0 DEGREES REMARK 500 ARG F 134 CD - NE - CZ ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG F 134 NE - CZ - NH1 ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG F 134 NE - CZ - NH2 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG F 137 CD - NE - CZ ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG F 137 NE - CZ - NH1 ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG F 137 NE - CZ - NH2 ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 -46.78 -162.72 REMARK 500 SER A 14 45.32 174.89 REMARK 500 ASN A 15 -162.88 -118.71 REMARK 500 LEU A 18 94.46 -44.93 REMARK 500 LYS A 20 30.63 -49.34 REMARK 500 TRP A 24 -129.69 -112.40 REMARK 500 ASP A 25 -60.44 169.30 REMARK 500 GLU A 26 -147.06 -70.39 REMARK 500 LYS A 31 -36.71 176.30 REMARK 500 SER A 61 -45.99 -153.82 REMARK 500 GLN A 101 49.48 33.45 REMARK 500 LYS A 103 -175.62 -66.28 REMARK 500 ASP A 104 -18.33 57.61 REMARK 500 ASP A 111 61.73 -151.52 REMARK 500 ALA B 13 -46.18 -162.20 REMARK 500 SER B 14 45.17 173.81 REMARK 500 ASN B 15 -162.58 -118.79 REMARK 500 LEU B 18 94.97 -46.43 REMARK 500 LYS B 20 31.19 -49.78 REMARK 500 TRP B 24 -130.52 -113.15 REMARK 500 ASP B 25 -47.84 165.88 REMARK 500 GLU B 26 -147.06 -87.26 REMARK 500 LYS B 31 -36.79 176.15 REMARK 500 SER B 61 -46.92 -154.33 REMARK 500 GLN B 101 49.98 33.92 REMARK 500 LYS B 103 -176.22 -65.47 REMARK 500 ASP B 104 -19.55 58.66 REMARK 500 ASP B 111 61.32 -150.67 REMARK 500 LEU C 10 83.59 174.59 REMARK 500 SER C 11 111.66 -11.95 REMARK 500 ALA C 13 -46.33 -162.59 REMARK 500 SER C 14 45.14 175.08 REMARK 500 ASN C 15 -163.09 -118.62 REMARK 500 LEU C 18 94.50 -46.38 REMARK 500 LYS C 20 30.60 -50.08 REMARK 500 TRP C 24 -129.88 -113.01 REMARK 500 ASP C 25 -52.90 165.62 REMARK 500 GLU C 26 -147.90 -77.89 REMARK 500 LYS C 31 -37.22 176.37 REMARK 500 SER C 61 -45.93 -155.06 REMARK 500 GLN C 101 50.77 32.72 REMARK 500 LYS C 103 -175.32 -65.87 REMARK 500 ASP C 104 -19.40 58.18 REMARK 500 ASP C 111 62.11 -151.19 REMARK 500 LEU D 10 90.76 99.13 REMARK 500 ALA D 13 -46.64 -163.12 REMARK 500 SER D 14 44.79 173.68 REMARK 500 ASN D 15 -163.42 -119.16 REMARK 500 LEU D 18 94.69 -45.37 REMARK 500 LYS D 20 30.57 -49.52 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 25 GLU B 26 -142.51 REMARK 500 ASP C 25 GLU C 26 -149.65 REMARK 500 ASP D 25 GLU D 26 -138.58 REMARK 500 ASP E 25 GLU E 26 -140.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP F 25 11.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 2PWJ A 1 171 UNP Q6KBB1 Q6KBB1_PEA 29 199 DBREF 2PWJ B 1 171 UNP Q6KBB1 Q6KBB1_PEA 29 199 DBREF 2PWJ C 1 171 UNP Q6KBB1 Q6KBB1_PEA 29 199 DBREF 2PWJ D 1 171 UNP Q6KBB1 Q6KBB1_PEA 29 199 DBREF 2PWJ E 1 171 UNP Q6KBB1 Q6KBB1_PEA 29 199 DBREF 2PWJ F 1 171 UNP Q6KBB1 Q6KBB1_PEA 29 199 SEQRES 1 A 171 ALA LYS VAL ALA THR GLY THR ASP ILE LEU SER ALA ALA SEQRES 2 A 171 SER ASN VAL SER LEU GLN LYS ALA ARG THR TRP ASP GLU SEQRES 3 A 171 GLY VAL GLU SER LYS PHE SER THR THR PRO VAL ASN ASP SEQRES 4 A 171 ILE PHE LYS ASP LYS LYS VAL VAL ILE PHE GLY LEU PRO SEQRES 5 A 171 GLY ALA TYR THR GLY VAL CYS SER SER LYS HIS VAL PRO SEQRES 6 A 171 PRO TYR LYS HIS ASN ILE ASP LYS PHE LYS ALA LYS GLY SEQRES 7 A 171 VAL ASP SER VAL ILE CYS VAL ALA ILE ASN ASP PRO TYR SEQRES 8 A 171 THR VAL ASN ALA TRP ALA GLU LYS ILE GLN ALA LYS ASP SEQRES 9 A 171 ALA ILE GLU PHE TYR GLY ASP PHE ASP GLY SER PHE HIS SEQRES 10 A 171 LYS SER LEU GLU LEU THR THR ASP LEU SER ALA GLY LEU SEQRES 11 A 171 LEU GLY ILE ARG SER GLU ARG TRP SER ALA TYR VAL VAL SEQRES 12 A 171 ASP GLY LYS VAL LYS ALA LEU ASN VAL GLU GLU SER PRO SEQRES 13 A 171 SER ASP VAL LYS VAL SER GLY ALA GLU THR ILE LEU GLY SEQRES 14 A 171 GLN ILE SEQRES 1 B 171 ALA LYS VAL ALA THR GLY THR ASP ILE LEU SER ALA ALA SEQRES 2 B 171 SER ASN VAL SER LEU GLN LYS ALA ARG THR TRP ASP GLU SEQRES 3 B 171 GLY VAL GLU SER LYS PHE SER THR THR PRO VAL ASN ASP SEQRES 4 B 171 ILE PHE LYS ASP LYS LYS VAL VAL ILE PHE GLY LEU PRO SEQRES 5 B 171 GLY ALA TYR THR GLY VAL CYS SER SER LYS HIS VAL PRO SEQRES 6 B 171 PRO TYR LYS HIS ASN ILE ASP LYS PHE LYS ALA LYS GLY SEQRES 7 B 171 VAL ASP SER VAL ILE CYS VAL ALA ILE ASN ASP PRO TYR SEQRES 8 B 171 THR VAL ASN ALA TRP ALA GLU LYS ILE GLN ALA LYS ASP SEQRES 9 B 171 ALA ILE GLU PHE TYR GLY ASP PHE ASP GLY SER PHE HIS SEQRES 10 B 171 LYS SER LEU GLU LEU THR THR ASP LEU SER ALA GLY LEU SEQRES 11 B 171 LEU GLY ILE ARG SER GLU ARG TRP SER ALA TYR VAL VAL SEQRES 12 B 171 ASP GLY LYS VAL LYS ALA LEU ASN VAL GLU GLU SER PRO SEQRES 13 B 171 SER ASP VAL LYS VAL SER GLY ALA GLU THR ILE LEU GLY SEQRES 14 B 171 GLN ILE SEQRES 1 C 171 ALA LYS VAL ALA THR GLY THR ASP ILE LEU SER ALA ALA SEQRES 2 C 171 SER ASN VAL SER LEU GLN LYS ALA ARG THR TRP ASP GLU SEQRES 3 C 171 GLY VAL GLU SER LYS PHE SER THR THR PRO VAL ASN ASP SEQRES 4 C 171 ILE PHE LYS ASP LYS LYS VAL VAL ILE PHE GLY LEU PRO SEQRES 5 C 171 GLY ALA TYR THR GLY VAL CYS SER SER LYS HIS VAL PRO SEQRES 6 C 171 PRO TYR LYS HIS ASN ILE ASP LYS PHE LYS ALA LYS GLY SEQRES 7 C 171 VAL ASP SER VAL ILE CYS VAL ALA ILE ASN ASP PRO TYR SEQRES 8 C 171 THR VAL ASN ALA TRP ALA GLU LYS ILE GLN ALA LYS ASP SEQRES 9 C 171 ALA ILE GLU PHE TYR GLY ASP PHE ASP GLY SER PHE HIS SEQRES 10 C 171 LYS SER LEU GLU LEU THR THR ASP LEU SER ALA GLY LEU SEQRES 11 C 171 LEU GLY ILE ARG SER GLU ARG TRP SER ALA TYR VAL VAL SEQRES 12 C 171 ASP GLY LYS VAL LYS ALA LEU ASN VAL GLU GLU SER PRO SEQRES 13 C 171 SER ASP VAL LYS VAL SER GLY ALA GLU THR ILE LEU GLY SEQRES 14 C 171 GLN ILE SEQRES 1 D 171 ALA LYS VAL ALA THR GLY THR ASP ILE LEU SER ALA ALA SEQRES 2 D 171 SER ASN VAL SER LEU GLN LYS ALA ARG THR TRP ASP GLU SEQRES 3 D 171 GLY VAL GLU SER LYS PHE SER THR THR PRO VAL ASN ASP SEQRES 4 D 171 ILE PHE LYS ASP LYS LYS VAL VAL ILE PHE GLY LEU PRO SEQRES 5 D 171 GLY ALA TYR THR GLY VAL CYS SER SER LYS HIS VAL PRO SEQRES 6 D 171 PRO TYR LYS HIS ASN ILE ASP LYS PHE LYS ALA LYS GLY SEQRES 7 D 171 VAL ASP SER VAL ILE CYS VAL ALA ILE ASN ASP PRO TYR SEQRES 8 D 171 THR VAL ASN ALA TRP ALA GLU LYS ILE GLN ALA LYS ASP SEQRES 9 D 171 ALA ILE GLU PHE TYR GLY ASP PHE ASP GLY SER PHE HIS SEQRES 10 D 171 LYS SER LEU GLU LEU THR THR ASP LEU SER ALA GLY LEU SEQRES 11 D 171 LEU GLY ILE ARG SER GLU ARG TRP SER ALA TYR VAL VAL SEQRES 12 D 171 ASP GLY LYS VAL LYS ALA LEU ASN VAL GLU GLU SER PRO SEQRES 13 D 171 SER ASP VAL LYS VAL SER GLY ALA GLU THR ILE LEU GLY SEQRES 14 D 171 GLN ILE SEQRES 1 E 171 ALA LYS VAL ALA THR GLY THR ASP ILE LEU SER ALA ALA SEQRES 2 E 171 SER ASN VAL SER LEU GLN LYS ALA ARG THR TRP ASP GLU SEQRES 3 E 171 GLY VAL GLU SER LYS PHE SER THR THR PRO VAL ASN ASP SEQRES 4 E 171 ILE PHE LYS ASP LYS LYS VAL VAL ILE PHE GLY LEU PRO SEQRES 5 E 171 GLY ALA TYR THR GLY VAL CYS SER SER LYS HIS VAL PRO SEQRES 6 E 171 PRO TYR LYS HIS ASN ILE ASP LYS PHE LYS ALA LYS GLY SEQRES 7 E 171 VAL ASP SER VAL ILE CYS VAL ALA ILE ASN ASP PRO TYR SEQRES 8 E 171 THR VAL ASN ALA TRP ALA GLU LYS ILE GLN ALA LYS ASP SEQRES 9 E 171 ALA ILE GLU PHE TYR GLY ASP PHE ASP GLY SER PHE HIS SEQRES 10 E 171 LYS SER LEU GLU LEU THR THR ASP LEU SER ALA GLY LEU SEQRES 11 E 171 LEU GLY ILE ARG SER GLU ARG TRP SER ALA TYR VAL VAL SEQRES 12 E 171 ASP GLY LYS VAL LYS ALA LEU ASN VAL GLU GLU SER PRO SEQRES 13 E 171 SER ASP VAL LYS VAL SER GLY ALA GLU THR ILE LEU GLY SEQRES 14 E 171 GLN ILE SEQRES 1 F 171 ALA LYS VAL ALA THR GLY THR ASP ILE LEU SER ALA ALA SEQRES 2 F 171 SER ASN VAL SER LEU GLN LYS ALA ARG THR TRP ASP GLU SEQRES 3 F 171 GLY VAL GLU SER LYS PHE SER THR THR PRO VAL ASN ASP SEQRES 4 F 171 ILE PHE LYS ASP LYS LYS VAL VAL ILE PHE GLY LEU PRO SEQRES 5 F 171 GLY ALA TYR THR GLY VAL CYS SER SER LYS HIS VAL PRO SEQRES 6 F 171 PRO TYR LYS HIS ASN ILE ASP LYS PHE LYS ALA LYS GLY SEQRES 7 F 171 VAL ASP SER VAL ILE CYS VAL ALA ILE ASN ASP PRO TYR SEQRES 8 F 171 THR VAL ASN ALA TRP ALA GLU LYS ILE GLN ALA LYS ASP SEQRES 9 F 171 ALA ILE GLU PHE TYR GLY ASP PHE ASP GLY SER PHE HIS SEQRES 10 F 171 LYS SER LEU GLU LEU THR THR ASP LEU SER ALA GLY LEU SEQRES 11 F 171 LEU GLY ILE ARG SER GLU ARG TRP SER ALA TYR VAL VAL SEQRES 12 F 171 ASP GLY LYS VAL LYS ALA LEU ASN VAL GLU GLU SER PRO SEQRES 13 F 171 SER ASP VAL LYS VAL SER GLY ALA GLU THR ILE LEU GLY SEQRES 14 F 171 GLN ILE HELIX 1 1 VAL A 37 LYS A 42 1 6 HELIX 2 2 HIS A 63 ASN A 70 1 8 HELIX 3 3 ASN A 70 LYS A 77 1 8 HELIX 4 4 ASP A 89 ILE A 100 1 12 HELIX 5 5 GLY A 114 GLU A 121 1 8 HELIX 6 6 GLY A 163 ILE A 171 1 9 HELIX 7 7 VAL B 37 LYS B 42 1 6 HELIX 8 8 HIS B 63 ASN B 70 1 8 HELIX 9 9 ASN B 70 LYS B 77 1 8 HELIX 10 10 ASP B 89 ILE B 100 1 12 HELIX 11 11 GLY B 114 LEU B 120 1 7 HELIX 12 12 GLY B 163 ILE B 171 1 9 HELIX 13 13 VAL C 37 LYS C 42 1 6 HELIX 14 14 HIS C 63 ASN C 70 1 8 HELIX 15 15 ASN C 70 LYS C 77 1 8 HELIX 16 16 ASP C 89 ILE C 100 1 12 HELIX 17 17 GLY C 114 GLU C 121 1 8 HELIX 18 18 GLY C 163 ILE C 171 1 9 HELIX 19 19 VAL D 37 LYS D 42 1 6 HELIX 20 20 HIS D 63 ASN D 70 1 8 HELIX 21 21 ASN D 70 LYS D 77 1 8 HELIX 22 22 ASP D 89 ILE D 100 1 12 HELIX 23 23 GLY D 114 GLU D 121 1 8 HELIX 24 24 SER D 127 LEU D 130 5 4 HELIX 25 25 GLY D 163 ILE D 171 1 9 HELIX 26 26 VAL E 37 LYS E 42 1 6 HELIX 27 27 HIS E 63 ASN E 70 1 8 HELIX 28 28 ASN E 70 LYS E 77 1 8 HELIX 29 29 ASP E 89 ILE E 100 1 12 HELIX 30 30 GLY E 114 LEU E 120 1 7 HELIX 31 31 SER E 127 LEU E 130 5 4 HELIX 32 32 GLY E 163 ILE E 171 1 9 HELIX 33 33 VAL F 37 LYS F 42 1 6 HELIX 34 34 HIS F 63 ASN F 70 1 8 HELIX 35 35 ASN F 70 LYS F 77 1 8 HELIX 36 36 ASP F 89 ILE F 100 1 12 HELIX 37 37 GLY F 114 SER F 119 1 6 HELIX 38 38 GLY F 163 ILE F 171 1 9 SHEET 1 A 2 ARG A 22 THR A 23 0 SHEET 2 A 2 THR A 35 PRO A 36 -1 O THR A 35 N THR A 23 SHEET 1 B 5 GLU A 107 GLY A 110 0 SHEET 2 B 5 SER A 81 ALA A 86 1 N CYS A 84 O TYR A 109 SHEET 3 B 5 LYS A 45 GLY A 50 1 N VAL A 47 O ILE A 83 SHEET 4 B 5 TRP A 138 VAL A 143 -1 O VAL A 142 N VAL A 46 SHEET 5 B 5 LYS A 146 VAL A 152 -1 O LYS A 146 N VAL A 143 SHEET 1 C 2 THR A 123 ASP A 125 0 SHEET 2 C 2 ILE A 133 SER A 135 -1 O ARG A 134 N THR A 124 SHEET 1 D 2 ARG B 22 THR B 23 0 SHEET 2 D 2 THR B 35 PRO B 36 -1 O THR B 35 N THR B 23 SHEET 1 E 5 GLU B 107 GLY B 110 0 SHEET 2 E 5 SER B 81 ALA B 86 1 N CYS B 84 O TYR B 109 SHEET 3 E 5 LYS B 45 GLY B 50 1 N VAL B 47 O ILE B 83 SHEET 4 E 5 TRP B 138 VAL B 143 -1 O VAL B 142 N VAL B 46 SHEET 5 E 5 LYS B 146 VAL B 152 -1 O LYS B 146 N VAL B 143 SHEET 1 F 2 THR B 123 ASP B 125 0 SHEET 2 F 2 ILE B 133 SER B 135 -1 O ARG B 134 N THR B 124 SHEET 1 G 2 ARG C 22 THR C 23 0 SHEET 2 G 2 THR C 35 PRO C 36 -1 O THR C 35 N THR C 23 SHEET 1 H 5 GLU C 107 GLY C 110 0 SHEET 2 H 5 SER C 81 ALA C 86 1 N CYS C 84 O TYR C 109 SHEET 3 H 5 LYS C 45 GLY C 50 1 N VAL C 47 O ILE C 83 SHEET 4 H 5 TRP C 138 VAL C 143 -1 O VAL C 142 N VAL C 46 SHEET 5 H 5 LYS C 146 VAL C 152 -1 O LYS C 146 N VAL C 143 SHEET 1 I 2 THR C 123 ASP C 125 0 SHEET 2 I 2 ILE C 133 SER C 135 -1 O ARG C 134 N THR C 124 SHEET 1 J 2 ARG D 22 THR D 23 0 SHEET 2 J 2 THR D 35 PRO D 36 -1 O THR D 35 N THR D 23 SHEET 1 K 5 GLU D 107 GLY D 110 0 SHEET 2 K 5 SER D 81 ALA D 86 1 N CYS D 84 O TYR D 109 SHEET 3 K 5 LYS D 45 GLY D 50 1 N VAL D 47 O ILE D 83 SHEET 4 K 5 TRP D 138 VAL D 143 -1 O VAL D 142 N VAL D 46 SHEET 5 K 5 LYS D 146 VAL D 152 -1 O LYS D 146 N VAL D 143 SHEET 1 L 2 THR D 123 ASP D 125 0 SHEET 2 L 2 ILE D 133 SER D 135 -1 O ARG D 134 N THR D 124 SHEET 1 M 2 ARG E 22 THR E 23 0 SHEET 2 M 2 THR E 35 PRO E 36 -1 O THR E 35 N THR E 23 SHEET 1 N 5 GLU E 107 GLY E 110 0 SHEET 2 N 5 SER E 81 ALA E 86 1 N CYS E 84 O TYR E 109 SHEET 3 N 5 LYS E 45 GLY E 50 1 N VAL E 47 O ILE E 83 SHEET 4 N 5 TRP E 138 VAL E 143 -1 O VAL E 142 N VAL E 46 SHEET 5 N 5 LYS E 146 VAL E 152 -1 O LYS E 146 N VAL E 143 SHEET 1 O 2 THR E 123 ASP E 125 0 SHEET 2 O 2 ILE E 133 SER E 135 -1 O ARG E 134 N THR E 124 SHEET 1 P 2 ARG F 22 THR F 23 0 SHEET 2 P 2 THR F 35 PRO F 36 -1 O THR F 35 N THR F 23 SHEET 1 Q 5 GLU F 107 GLY F 110 0 SHEET 2 Q 5 SER F 81 ALA F 86 1 N CYS F 84 O TYR F 109 SHEET 3 Q 5 LYS F 45 GLY F 50 1 N VAL F 47 O ILE F 83 SHEET 4 Q 5 TRP F 138 VAL F 143 -1 O VAL F 142 N VAL F 46 SHEET 5 Q 5 LYS F 146 VAL F 152 -1 O LYS F 146 N VAL F 143 SHEET 1 R 2 THR F 123 ASP F 125 0 SHEET 2 R 2 ILE F 133 SER F 135 -1 O ARG F 134 N THR F 124 CRYST1 61.880 66.400 77.230 102.94 104.44 99.07 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016160 0.002580 0.005067 0.00000 SCALE2 0.000000 0.015251 0.004367 0.00000 SCALE3 0.000000 0.000000 0.013908 0.00000