data_2PWT # _entry.id 2PWT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PWT pdb_00002pwt 10.2210/pdb2pwt/pdb NDB DR0040 ? ? RCSB RCSB042864 ? ? WWPDB D_1000042864 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 4 'Structure model' 1 3 2023-08-30 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_molecule_features 4 3 'Structure model' struct_site 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2PWT _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-13 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Pachamuthu, K.' 2 'Francois, B.' 3 'Szychowski, J.' 4 'Hanessian, S.' 5 'Westhof, E.' 6 # _citation.id primary _citation.title ;Crystal Structure of the Bacterial Ribosomal Decoding Site Complexed with a Synthetic Doubly Functionalized Paromomycin Derivative: a New Specific Binding Mode to an A-Minor Motif Enhances in vitro Antibacterial Activity ; _citation.journal_abbrev Chemmedchem _citation.journal_volume 2 _citation.page_first 1631 _citation.page_last 1638 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country DE _citation.journal_id_ISSN 1860-7179 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17722211 _citation.pdbx_database_id_DOI 10.1002/cmdc.200700113 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Pachamuthu, K.' 2 ? primary 'Francois, B.' 3 ? primary 'Szychowski, J.' 4 ? primary 'Hanessian, S.' 5 ? primary 'Westhof, E.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '22-mer of the ribosomal decoding site' 6743.077 2 ? ? ? ? 2 non-polymer syn 'DOUBLY FUNCTIONALIZED PAROMOMYCIN PM-II-162' 863.949 3 ? ? ? ? 3 water nat water 18.015 206 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can GCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DOUBLY FUNCTIONALIZED PAROMOMYCIN PM-II-162' LHA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 U n 1 5 C n 1 6 A n 1 7 C n 1 8 A n 1 9 C n 1 10 C n 1 11 G n 1 12 G n 1 13 U n 1 14 G n 1 15 A n 1 16 A n 1 17 G n 1 18 U n 1 19 C n 1 20 G n 1 21 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LHA non-polymer . 'DOUBLY FUNCTIONALIZED PAROMOMYCIN PM-II-162' ;(2S)-4-AMINO-N-[(1R,2S,3R,4R,5S)-5-AMINO-4-[(2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-3-{[3-O-(2,6-DIAMINO-2,6-DIDEO XY-BETA-L-IDOPYRANOSYL)-2-O-{2-[(2-PHENYLETHYL)AMINO]ETHYL}-BETA-D-RIBOFURANOSYL]OXY}-2-HYDROXYCYCLOHEXYL]-2-HYDROXYBUTA NAMIDE ; 'C37 H65 N7 O16' 863.949 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2 2 G G A . n A 1 2 C 2 3 3 C C A . n A 1 3 G 3 4 4 G G A . n A 1 4 U 4 5 5 U U A . n A 1 5 C 5 6 6 C C A . n A 1 6 A 6 7 7 A A A . n A 1 7 C 7 8 8 C C A . n A 1 8 A 8 9 9 A A A . n A 1 9 C 9 10 10 C C A . n A 1 10 C 10 11 11 C C A . n A 1 11 G 11 12 12 G G A . n A 1 12 G 12 13 13 G G A . n A 1 13 U 13 14 14 U U A . n A 1 14 G 14 15 15 G G A . n A 1 15 A 15 16 16 A A A . n A 1 16 A 16 17 17 A A A . n A 1 17 G 17 18 18 G G A . n A 1 18 U 18 19 19 U U A . n A 1 19 C 19 20 20 C C A . n A 1 20 G 20 21 21 G G A . n A 1 21 C 21 22 22 C C A . n B 1 1 G 1 24 24 G G B . n B 1 2 C 2 25 25 C C B . n B 1 3 G 3 26 26 G G B . n B 1 4 U 4 27 27 U U B . n B 1 5 C 5 28 28 C C B . n B 1 6 A 6 29 29 A A B . n B 1 7 C 7 30 30 C C B . n B 1 8 A 8 31 31 A A B . n B 1 9 C 9 32 32 C C B . n B 1 10 C 10 33 33 C C B . n B 1 11 G 11 34 34 G G B . n B 1 12 G 12 35 35 G G B . n B 1 13 U 13 36 36 U U B . n B 1 14 G 14 37 37 G G B . n B 1 15 A 15 38 38 A A B . n B 1 16 A 16 39 39 A A B . n B 1 17 G 17 40 40 G G B . n B 1 18 U 18 41 41 U U B . n B 1 19 C 19 42 42 C C B . n B 1 20 G 20 43 43 G G B . n B 1 21 C 21 44 44 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LHA 1 51 51 LHA LHA A . D 2 LHA 1 50 50 LHA LHA B . E 2 LHA 1 55 55 LHA LHA B . F 3 HOH 1 101 101 HOH HOH A . F 3 HOH 2 102 102 HOH HOH A . F 3 HOH 3 104 104 HOH HOH A . F 3 HOH 4 105 105 HOH HOH A . F 3 HOH 5 107 107 HOH HOH A . F 3 HOH 6 111 111 HOH HOH A . F 3 HOH 7 113 113 HOH HOH A . F 3 HOH 8 114 114 HOH HOH A . F 3 HOH 9 119 119 HOH HOH A . F 3 HOH 10 123 123 HOH HOH A . F 3 HOH 11 124 124 HOH HOH A . F 3 HOH 12 127 127 HOH HOH A . F 3 HOH 13 128 128 HOH HOH A . F 3 HOH 14 129 129 HOH HOH A . F 3 HOH 15 131 131 HOH HOH A . F 3 HOH 16 134 134 HOH HOH A . F 3 HOH 17 140 140 HOH HOH A . F 3 HOH 18 141 141 HOH HOH A . F 3 HOH 19 142 142 HOH HOH A . F 3 HOH 20 143 143 HOH HOH A . F 3 HOH 21 144 144 HOH HOH A . F 3 HOH 22 149 149 HOH HOH A . F 3 HOH 23 150 150 HOH HOH A . F 3 HOH 24 151 151 HOH HOH A . F 3 HOH 25 152 152 HOH HOH A . F 3 HOH 26 153 153 HOH HOH A . F 3 HOH 27 154 154 HOH HOH A . F 3 HOH 28 156 156 HOH HOH A . F 3 HOH 29 159 159 HOH HOH A . F 3 HOH 30 161 161 HOH HOH A . F 3 HOH 31 163 163 HOH HOH A . F 3 HOH 32 165 165 HOH HOH A . F 3 HOH 33 167 167 HOH HOH A . F 3 HOH 34 168 168 HOH HOH A . F 3 HOH 35 170 170 HOH HOH A . F 3 HOH 36 171 171 HOH HOH A . F 3 HOH 37 174 174 HOH HOH A . F 3 HOH 38 178 178 HOH HOH A . F 3 HOH 39 179 179 HOH HOH A . F 3 HOH 40 182 182 HOH HOH A . F 3 HOH 41 185 185 HOH HOH A . F 3 HOH 42 187 187 HOH HOH A . F 3 HOH 43 188 188 HOH HOH A . F 3 HOH 44 189 189 HOH HOH A . F 3 HOH 45 191 191 HOH HOH A . F 3 HOH 46 197 197 HOH HOH A . F 3 HOH 47 199 199 HOH HOH A . F 3 HOH 48 200 200 HOH HOH A . F 3 HOH 49 201 201 HOH HOH A . F 3 HOH 50 202 202 HOH HOH A . F 3 HOH 51 204 204 HOH HOH A . F 3 HOH 52 205 205 HOH HOH A . F 3 HOH 53 206 206 HOH HOH A . F 3 HOH 54 207 207 HOH HOH A . F 3 HOH 55 208 208 HOH HOH A . F 3 HOH 56 210 210 HOH HOH A . F 3 HOH 57 216 216 HOH HOH A . F 3 HOH 58 221 221 HOH HOH A . F 3 HOH 59 223 223 HOH HOH A . F 3 HOH 60 224 224 HOH HOH A . F 3 HOH 61 225 225 HOH HOH A . F 3 HOH 62 229 229 HOH HOH A . F 3 HOH 63 230 230 HOH HOH A . F 3 HOH 64 232 232 HOH HOH A . F 3 HOH 65 234 234 HOH HOH A . F 3 HOH 66 235 235 HOH HOH A . F 3 HOH 67 236 236 HOH HOH A . F 3 HOH 68 238 238 HOH HOH A . F 3 HOH 69 240 240 HOH HOH A . F 3 HOH 70 241 241 HOH HOH A . F 3 HOH 71 242 242 HOH HOH A . F 3 HOH 72 243 243 HOH HOH A . F 3 HOH 73 245 245 HOH HOH A . F 3 HOH 74 246 246 HOH HOH A . F 3 HOH 75 247 247 HOH HOH A . F 3 HOH 76 251 251 HOH HOH A . F 3 HOH 77 252 252 HOH HOH A . F 3 HOH 78 257 257 HOH HOH A . F 3 HOH 79 259 259 HOH HOH A . F 3 HOH 80 262 262 HOH HOH A . F 3 HOH 81 263 263 HOH HOH A . F 3 HOH 82 265 265 HOH HOH A . F 3 HOH 83 267 267 HOH HOH A . F 3 HOH 84 268 268 HOH HOH A . F 3 HOH 85 270 270 HOH HOH A . F 3 HOH 86 272 272 HOH HOH A . F 3 HOH 87 273 273 HOH HOH A . F 3 HOH 88 274 274 HOH HOH A . F 3 HOH 89 281 281 HOH HOH A . F 3 HOH 90 283 283 HOH HOH A . F 3 HOH 91 286 286 HOH HOH A . F 3 HOH 92 287 287 HOH HOH A . F 3 HOH 93 288 288 HOH HOH A . F 3 HOH 94 295 295 HOH HOH A . F 3 HOH 95 298 298 HOH HOH A . F 3 HOH 96 301 301 HOH HOH A . F 3 HOH 97 302 302 HOH HOH A . G 3 HOH 1 100 100 HOH HOH B . G 3 HOH 2 103 103 HOH HOH B . G 3 HOH 3 106 106 HOH HOH B . G 3 HOH 4 108 108 HOH HOH B . G 3 HOH 5 109 109 HOH HOH B . G 3 HOH 6 110 110 HOH HOH B . G 3 HOH 7 112 112 HOH HOH B . G 3 HOH 8 115 115 HOH HOH B . G 3 HOH 9 116 116 HOH HOH B . G 3 HOH 10 117 117 HOH HOH B . G 3 HOH 11 118 118 HOH HOH B . G 3 HOH 12 120 120 HOH HOH B . G 3 HOH 13 121 121 HOH HOH B . G 3 HOH 14 122 122 HOH HOH B . G 3 HOH 15 125 125 HOH HOH B . G 3 HOH 16 126 126 HOH HOH B . G 3 HOH 17 130 130 HOH HOH B . G 3 HOH 18 132 132 HOH HOH B . G 3 HOH 19 133 133 HOH HOH B . G 3 HOH 20 135 135 HOH HOH B . G 3 HOH 21 136 136 HOH HOH B . G 3 HOH 22 137 137 HOH HOH B . G 3 HOH 23 138 138 HOH HOH B . G 3 HOH 24 139 139 HOH HOH B . G 3 HOH 25 145 145 HOH HOH B . G 3 HOH 26 146 146 HOH HOH B . G 3 HOH 27 147 147 HOH HOH B . G 3 HOH 28 148 148 HOH HOH B . G 3 HOH 29 155 155 HOH HOH B . G 3 HOH 30 157 157 HOH HOH B . G 3 HOH 31 158 158 HOH HOH B . G 3 HOH 32 160 160 HOH HOH B . G 3 HOH 33 162 162 HOH HOH B . G 3 HOH 34 164 164 HOH HOH B . G 3 HOH 35 166 166 HOH HOH B . G 3 HOH 36 169 169 HOH HOH B . G 3 HOH 37 172 172 HOH HOH B . G 3 HOH 38 173 173 HOH HOH B . G 3 HOH 39 175 175 HOH HOH B . G 3 HOH 40 176 176 HOH HOH B . G 3 HOH 41 177 177 HOH HOH B . G 3 HOH 42 180 180 HOH HOH B . G 3 HOH 43 181 181 HOH HOH B . G 3 HOH 44 183 183 HOH HOH B . G 3 HOH 45 184 184 HOH HOH B . G 3 HOH 46 186 186 HOH HOH B . G 3 HOH 47 190 190 HOH HOH B . G 3 HOH 48 192 192 HOH HOH B . G 3 HOH 49 193 193 HOH HOH B . G 3 HOH 50 194 194 HOH HOH B . G 3 HOH 51 195 195 HOH HOH B . G 3 HOH 52 196 196 HOH HOH B . G 3 HOH 53 198 198 HOH HOH B . G 3 HOH 54 203 203 HOH HOH B . G 3 HOH 55 209 209 HOH HOH B . G 3 HOH 56 211 211 HOH HOH B . G 3 HOH 57 212 212 HOH HOH B . G 3 HOH 58 213 213 HOH HOH B . G 3 HOH 59 214 214 HOH HOH B . G 3 HOH 60 215 215 HOH HOH B . G 3 HOH 61 217 217 HOH HOH B . G 3 HOH 62 218 218 HOH HOH B . G 3 HOH 63 219 219 HOH HOH B . G 3 HOH 64 220 220 HOH HOH B . G 3 HOH 65 222 222 HOH HOH B . G 3 HOH 66 226 226 HOH HOH B . G 3 HOH 67 227 227 HOH HOH B . G 3 HOH 68 228 228 HOH HOH B . G 3 HOH 69 231 231 HOH HOH B . G 3 HOH 70 233 233 HOH HOH B . G 3 HOH 71 237 237 HOH HOH B . G 3 HOH 72 239 239 HOH HOH B . G 3 HOH 73 244 244 HOH HOH B . G 3 HOH 74 248 248 HOH HOH B . G 3 HOH 75 249 249 HOH HOH B . G 3 HOH 76 250 250 HOH HOH B . G 3 HOH 77 253 253 HOH HOH B . G 3 HOH 78 254 254 HOH HOH B . G 3 HOH 79 255 255 HOH HOH B . G 3 HOH 80 256 256 HOH HOH B . G 3 HOH 81 258 258 HOH HOH B . G 3 HOH 82 260 260 HOH HOH B . G 3 HOH 83 261 261 HOH HOH B . G 3 HOH 84 264 264 HOH HOH B . G 3 HOH 85 266 266 HOH HOH B . G 3 HOH 86 269 269 HOH HOH B . G 3 HOH 87 271 271 HOH HOH B . G 3 HOH 88 275 275 HOH HOH B . G 3 HOH 89 276 276 HOH HOH B . G 3 HOH 90 277 277 HOH HOH B . G 3 HOH 91 278 278 HOH HOH B . G 3 HOH 92 279 279 HOH HOH B . G 3 HOH 93 280 280 HOH HOH B . G 3 HOH 94 282 282 HOH HOH B . G 3 HOH 95 284 284 HOH HOH B . G 3 HOH 96 285 285 HOH HOH B . G 3 HOH 97 289 289 HOH HOH B . G 3 HOH 98 290 290 HOH HOH B . G 3 HOH 99 291 291 HOH HOH B . G 3 HOH 100 292 292 HOH HOH B . G 3 HOH 101 293 293 HOH HOH B . G 3 HOH 102 294 294 HOH HOH B . G 3 HOH 103 296 296 HOH HOH B . G 3 HOH 104 297 297 HOH HOH B . G 3 HOH 105 299 299 HOH HOH B . G 3 HOH 106 300 300 HOH HOH B . G 3 HOH 107 303 303 HOH HOH B . G 3 HOH 108 304 304 HOH HOH B . G 3 HOH 109 305 305 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 CrystalClear . ? ? ? ? 'data collection' ? ? ? 3 CrystalClear . ? ? ? ? 'data reduction' ? ? ? 4 CrystalClear . ? ? ? ? 'data scaling' ? ? ? 5 AMoRE . ? ? ? ? phasing ? ? ? 6 # _cell.length_a 35.490 _cell.length_b 43.020 _cell.length_c 98.750 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2PWT _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 2PWT _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2PWT _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 55.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.temp 310 _exptl_crystal_grow.pdbx_details ;50 mM Na Cacodylate (pH 6.4), 150 mM KCl, 1% Glycerol, 1% 2-methyl-2,4-pentandiol, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 310K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 KCl ? ? ? 1 3 1 Glycerol ? ? ? 1 4 1 'sodium Cacodylate' ? ? ? 1 5 2 MPD ? ? ? 1 6 2 KCl ? ? ? 1 7 2 Glycerol ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-06-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9999 _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA # _reflns.entry_id 2PWT _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 32.4 _reflns.number_all ? _reflns.number_obs 14605 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 19.1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.609 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 11.2 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PWT _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 32.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.900 _refine.ls_number_reflns_obs 14603 _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.243 _refine.ls_percent_reflns_R_free 15.500 _refine.ls_number_reflns_R_free 2272 _refine.B_iso_mean 37.822 _refine.solvent_model_param_bsol 38.111 _refine.aniso_B[1][1] -2.204 _refine.aniso_B[2][2] 2.918 _refine.aniso_B[3][3] -0.714 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1J7T _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Parkinson et al Acta Cryst. D52, 57 (1996)' _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 900 _refine_hist.pdbx_number_atoms_ligand 180 _refine_hist.number_atoms_solvent 206 _refine_hist.number_atoms_total 1286 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 32.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 1.500 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.9 2.000 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.664 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.380 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:dna-rna_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 3 LHA_xplor.param ? 'X-RAY DIFFRACTION' 4 LHA_xplor.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2PWT _struct.title 'Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PWT _struct_keywords.pdbx_keywords RNA/ANTIBIOTIC _struct_keywords.text 'aminoglycoside; haba group; ribosomal decoding site; X-ray analysis; RNA, RNA-ANTIBIOTIC complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2PWT _struct_ref.pdbx_db_accession 2PWT _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PWT A 1 ? 21 ? 2PWT 2 ? 22 ? 2 22 2 1 2PWT B 1 ? 21 ? 2PWT 24 ? 44 ? 24 44 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 20 N1 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 20 O6 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 20 N2 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 B U 18 O4 ? ? A U 5 B U 41 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog11 hydrog ? ? A U 4 O2 ? ? ? 1_555 B U 18 N3 ? ? A U 5 B U 41 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 17 N1 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 17 O6 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 17 N2 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 B U 13 N3 ? ? A A 9 B U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 B U 13 O4 ? ? A A 9 B U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 8 N1 ? ? A U 14 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 13 O4 ? ? ? 1_555 B A 8 N6 ? ? A U 14 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 18 N3 ? ? ? 1_555 B U 4 O4 ? ? A U 19 B U 27 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog41 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 20 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 20 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 20 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B LHA 50 ? 25 'BINDING SITE FOR RESIDUE LHA B 50' AC2 Software A LHA 51 ? 28 'BINDING SITE FOR RESIDUE LHA A 51' AC3 Software B LHA 55 ? 27 'BINDING SITE FOR RESIDUE LHA B 55' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 G A 1 ? G A 2 . ? 1_555 ? 2 AC1 25 C A 2 ? C A 3 . ? 1_555 ? 3 AC1 25 U A 4 ? U A 5 . ? 1_555 ? 4 AC1 25 C A 5 ? C A 6 . ? 1_555 ? 5 AC1 25 A A 6 ? A A 7 . ? 1_555 ? 6 AC1 25 HOH F . ? HOH A 165 . ? 1_555 ? 7 AC1 25 G B 12 ? G B 35 . ? 1_555 ? 8 AC1 25 U B 13 ? U B 36 . ? 1_555 ? 9 AC1 25 G B 14 ? G B 37 . ? 1_555 ? 10 AC1 25 A B 15 ? A B 38 . ? 1_555 ? 11 AC1 25 A B 16 ? A B 39 . ? 1_555 ? 12 AC1 25 G B 17 ? G B 40 . ? 1_555 ? 13 AC1 25 U B 18 ? U B 41 . ? 1_555 ? 14 AC1 25 C B 19 ? C B 42 . ? 1_555 ? 15 AC1 25 G B 20 ? G B 43 . ? 1_555 ? 16 AC1 25 HOH G . ? HOH B 103 . ? 1_555 ? 17 AC1 25 HOH G . ? HOH B 110 . ? 1_555 ? 18 AC1 25 HOH G . ? HOH B 118 . ? 1_555 ? 19 AC1 25 HOH G . ? HOH B 139 . ? 1_555 ? 20 AC1 25 HOH G . ? HOH B 164 . ? 1_555 ? 21 AC1 25 HOH G . ? HOH B 180 . ? 1_555 ? 22 AC1 25 HOH G . ? HOH B 183 . ? 1_555 ? 23 AC1 25 HOH G . ? HOH B 209 . ? 1_555 ? 24 AC1 25 HOH G . ? HOH B 249 . ? 1_555 ? 25 AC1 25 HOH G . ? HOH B 290 . ? 1_555 ? 26 AC2 28 G A 12 ? G A 13 . ? 1_555 ? 27 AC2 28 U A 13 ? U A 14 . ? 1_555 ? 28 AC2 28 G A 14 ? G A 15 . ? 1_555 ? 29 AC2 28 A A 15 ? A A 16 . ? 1_555 ? 30 AC2 28 A A 16 ? A A 17 . ? 1_555 ? 31 AC2 28 G A 17 ? G A 18 . ? 1_555 ? 32 AC2 28 U A 18 ? U A 19 . ? 1_555 ? 33 AC2 28 C A 19 ? C A 20 . ? 1_555 ? 34 AC2 28 G A 20 ? G A 21 . ? 1_555 ? 35 AC2 28 C A 21 ? C A 22 . ? 1_555 ? 36 AC2 28 HOH F . ? HOH A 101 . ? 1_555 ? 37 AC2 28 HOH F . ? HOH A 105 . ? 1_555 ? 38 AC2 28 HOH F . ? HOH A 111 . ? 1_555 ? 39 AC2 28 HOH F . ? HOH A 123 . ? 1_555 ? 40 AC2 28 HOH F . ? HOH A 153 . ? 1_555 ? 41 AC2 28 HOH F . ? HOH A 167 . ? 1_555 ? 42 AC2 28 HOH F . ? HOH A 168 . ? 1_555 ? 43 AC2 28 HOH F . ? HOH A 170 . ? 1_555 ? 44 AC2 28 HOH F . ? HOH A 191 . ? 1_555 ? 45 AC2 28 HOH F . ? HOH A 200 . ? 1_555 ? 46 AC2 28 HOH F . ? HOH A 223 . ? 1_555 ? 47 AC2 28 HOH F . ? HOH A 301 . ? 1_555 ? 48 AC2 28 U B 4 ? U B 27 . ? 1_555 ? 49 AC2 28 C B 5 ? C B 28 . ? 1_555 ? 50 AC2 28 A B 6 ? A B 29 . ? 1_555 ? 51 AC2 28 LHA E . ? LHA B 55 . ? 1_565 ? 52 AC2 28 HOH G . ? HOH B 194 . ? 1_565 ? 53 AC2 28 HOH G . ? HOH B 196 . ? 1_555 ? 54 AC3 27 G A 11 ? G A 12 . ? 1_555 ? 55 AC3 27 A A 15 ? A A 16 . ? 3_545 ? 56 AC3 27 C A 19 ? C A 20 . ? 1_545 ? 57 AC3 27 G A 20 ? G A 21 . ? 1_545 ? 58 AC3 27 LHA C . ? LHA A 51 . ? 1_545 ? 59 AC3 27 HOH F . ? HOH A 144 . ? 1_545 ? 60 AC3 27 HOH F . ? HOH A 185 . ? 1_545 ? 61 AC3 27 HOH F . ? HOH A 191 . ? 1_545 ? 62 AC3 27 G B 11 ? G B 34 . ? 1_555 ? 63 AC3 27 G B 12 ? G B 35 . ? 1_555 ? 64 AC3 27 A B 15 ? A B 38 . ? 4_455 ? 65 AC3 27 A B 16 ? A B 39 . ? 4_455 ? 66 AC3 27 U B 18 ? U B 41 . ? 1_455 ? 67 AC3 27 C B 19 ? C B 42 . ? 1_455 ? 68 AC3 27 G B 20 ? G B 43 . ? 1_455 ? 69 AC3 27 C B 21 ? C B 44 . ? 1_455 ? 70 AC3 27 HOH G . ? HOH B 125 . ? 1_555 ? 71 AC3 27 HOH G . ? HOH B 133 . ? 1_455 ? 72 AC3 27 HOH G . ? HOH B 148 . ? 1_555 ? 73 AC3 27 HOH G . ? HOH B 157 . ? 1_555 ? 74 AC3 27 HOH G . ? HOH B 169 . ? 1_555 ? 75 AC3 27 HOH G . ? HOH B 177 . ? 1_555 ? 76 AC3 27 HOH G . ? HOH B 192 . ? 1_555 ? 77 AC3 27 HOH G . ? HOH B 193 . ? 1_555 ? 78 AC3 27 HOH G . ? HOH B 194 . ? 1_555 ? 79 AC3 27 HOH G . ? HOH B 254 . ? 1_555 ? 80 AC3 27 HOH G . ? HOH B 278 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 2 ? ? OP3 A G 2 ? ? 1.523 1.607 -0.084 0.012 N 2 1 P B G 24 ? ? OP3 B G 24 ? ? 1.525 1.607 -0.082 0.012 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 LHA C11 C N S 114 LHA O11 O N N 115 LHA C21 C N R 116 LHA N21 N N N 117 LHA C31 C N R 118 LHA O31 O N N 119 LHA C41 C N S 120 LHA O41 O N N 121 LHA C51 C N R 122 LHA O51 O N N 123 LHA C61 C N N 124 LHA O61 O N N 125 LHA C12 C N R 126 LHA N12 N N N 127 LHA C22 C N N 128 LHA C32 C N S 129 LHA N32 N N N 130 LHA C42 C N R 131 LHA C52 C N R 132 LHA O52 O N N 133 LHA C62 C N S 134 LHA O62 O N N 135 LHA C13 C N S 136 LHA O13 O N N 137 LHA C23 C N R 138 LHA O23 O N N 139 LHA C33 C N R 140 LHA O33 O N N 141 LHA C43 C N R 142 LHA C53 C N N 143 LHA O53 O N N 144 LHA C14 C N R 145 LHA C24 C N R 146 LHA N24 N N N 147 LHA C34 C N R 148 LHA O34 O N N 149 LHA C44 C N S 150 LHA O44 O N N 151 LHA C54 C N S 152 LHA O54 O N N 153 LHA C64 C N N 154 LHA N64 N N N 155 LHA C15 C N N 156 LHA C25 C N N 157 LHA N25 N N N 158 LHA C35 C N N 159 LHA C45 C N N 160 LHA C16 C Y N 161 LHA C26 C Y N 162 LHA C36 C Y N 163 LHA C46 C Y N 164 LHA C56 C Y N 165 LHA C66 C Y N 166 LHA C17 C N N 167 LHA O17 O N N 168 LHA C27 C N S 169 LHA O27 O N N 170 LHA C37 C N N 171 LHA C47 C N N 172 LHA N47 N N N 173 LHA H11 H N N 174 LHA H21 H N N 175 LHA H211 H N N 176 LHA H212 H N N 177 LHA H31 H N N 178 LHA HO31 H N N 179 LHA H41 H N N 180 LHA HO41 H N N 181 LHA H51 H N N 182 LHA H611 H N N 183 LHA H612 H N N 184 LHA HO61 H N N 185 LHA H12 H N N 186 LHA HN12 H N N 187 LHA H221 H N N 188 LHA H222 H N N 189 LHA H32 H N N 190 LHA H321 H N N 191 LHA H322 H N N 192 LHA H42 H N N 193 LHA H52 H N N 194 LHA H62 H N N 195 LHA HO62 H N N 196 LHA H13 H N N 197 LHA H23 H N N 198 LHA H33 H N N 199 LHA H43 H N N 200 LHA H531 H N N 201 LHA H532 H N N 202 LHA HO53 H N N 203 LHA H14 H N N 204 LHA H24 H N N 205 LHA H241 H N N 206 LHA H242 H N N 207 LHA H34 H N N 208 LHA HO34 H N N 209 LHA H44 H N N 210 LHA HO44 H N N 211 LHA H54 H N N 212 LHA H641 H N N 213 LHA H642 H N N 214 LHA HN41 H N N 215 LHA HN42 H N N 216 LHA H151 H N N 217 LHA H152 H N N 218 LHA H251 H N N 219 LHA H252 H N N 220 LHA HN25 H N N 221 LHA H351 H N N 222 LHA H352 H N N 223 LHA H451 H N N 224 LHA H452 H N N 225 LHA H26 H N N 226 LHA H36 H N N 227 LHA H46 H N N 228 LHA H56 H N N 229 LHA H66 H N N 230 LHA H27 H N N 231 LHA HO27 H N N 232 LHA H371 H N N 233 LHA H372 H N N 234 LHA H471 H N N 235 LHA H472 H N N 236 LHA HN71 H N N 237 LHA HN72 H N N 238 U OP3 O N N 239 U P P N N 240 U OP1 O N N 241 U OP2 O N N 242 U "O5'" O N N 243 U "C5'" C N N 244 U "C4'" C N R 245 U "O4'" O N N 246 U "C3'" C N S 247 U "O3'" O N N 248 U "C2'" C N R 249 U "O2'" O N N 250 U "C1'" C N R 251 U N1 N N N 252 U C2 C N N 253 U O2 O N N 254 U N3 N N N 255 U C4 C N N 256 U O4 O N N 257 U C5 C N N 258 U C6 C N N 259 U HOP3 H N N 260 U HOP2 H N N 261 U "H5'" H N N 262 U "H5''" H N N 263 U "H4'" H N N 264 U "H3'" H N N 265 U "HO3'" H N N 266 U "H2'" H N N 267 U "HO2'" H N N 268 U "H1'" H N N 269 U H3 H N N 270 U H5 H N N 271 U H6 H N N 272 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 LHA C11 C21 sing N N 118 LHA C11 O11 sing N N 119 LHA C11 O51 sing N N 120 LHA C11 H11 sing N N 121 LHA O11 C42 sing N N 122 LHA C21 C31 sing N N 123 LHA C21 N21 sing N N 124 LHA C21 H21 sing N N 125 LHA N21 H211 sing N N 126 LHA N21 H212 sing N N 127 LHA C31 O31 sing N N 128 LHA C31 C41 sing N N 129 LHA C31 H31 sing N N 130 LHA O31 HO31 sing N N 131 LHA C41 O41 sing N N 132 LHA C41 C51 sing N N 133 LHA C41 H41 sing N N 134 LHA O41 HO41 sing N N 135 LHA C51 C61 sing N N 136 LHA C51 O51 sing N N 137 LHA C51 H51 sing N N 138 LHA C61 O61 sing N N 139 LHA C61 H611 sing N N 140 LHA C61 H612 sing N N 141 LHA O61 HO61 sing N N 142 LHA C12 C22 sing N N 143 LHA C12 N12 sing N N 144 LHA C12 C62 sing N N 145 LHA C12 H12 sing N N 146 LHA N12 C17 sing N N 147 LHA N12 HN12 sing N N 148 LHA C22 C32 sing N N 149 LHA C22 H221 sing N N 150 LHA C22 H222 sing N N 151 LHA C32 N32 sing N N 152 LHA C32 C42 sing N N 153 LHA C32 H32 sing N N 154 LHA N32 H321 sing N N 155 LHA N32 H322 sing N N 156 LHA C42 C52 sing N N 157 LHA C42 H42 sing N N 158 LHA C52 O52 sing N N 159 LHA C52 C62 sing N N 160 LHA C52 H52 sing N N 161 LHA O52 C13 sing N N 162 LHA C62 O62 sing N N 163 LHA C62 H62 sing N N 164 LHA O62 HO62 sing N N 165 LHA C13 O13 sing N N 166 LHA C13 C23 sing N N 167 LHA C13 H13 sing N N 168 LHA O13 C43 sing N N 169 LHA C23 O23 sing N N 170 LHA C23 C33 sing N N 171 LHA C23 H23 sing N N 172 LHA O23 C15 sing N N 173 LHA C33 C43 sing N N 174 LHA C33 O33 sing N N 175 LHA C33 H33 sing N N 176 LHA O33 C14 sing N N 177 LHA C43 C53 sing N N 178 LHA C43 H43 sing N N 179 LHA C53 O53 sing N N 180 LHA C53 H531 sing N N 181 LHA C53 H532 sing N N 182 LHA O53 HO53 sing N N 183 LHA C14 O54 sing N N 184 LHA C14 C24 sing N N 185 LHA C14 H14 sing N N 186 LHA C24 N24 sing N N 187 LHA C24 C34 sing N N 188 LHA C24 H24 sing N N 189 LHA N24 H241 sing N N 190 LHA N24 H242 sing N N 191 LHA C34 C44 sing N N 192 LHA C34 O34 sing N N 193 LHA C34 H34 sing N N 194 LHA O34 HO34 sing N N 195 LHA C44 C54 sing N N 196 LHA C44 O44 sing N N 197 LHA C44 H44 sing N N 198 LHA O44 HO44 sing N N 199 LHA C54 O54 sing N N 200 LHA C54 C64 sing N N 201 LHA C54 H54 sing N N 202 LHA C64 N64 sing N N 203 LHA C64 H641 sing N N 204 LHA C64 H642 sing N N 205 LHA N64 HN41 sing N N 206 LHA N64 HN42 sing N N 207 LHA C15 C25 sing N N 208 LHA C15 H151 sing N N 209 LHA C15 H152 sing N N 210 LHA C25 N25 sing N N 211 LHA C25 H251 sing N N 212 LHA C25 H252 sing N N 213 LHA N25 C35 sing N N 214 LHA N25 HN25 sing N N 215 LHA C35 C45 sing N N 216 LHA C35 H351 sing N N 217 LHA C35 H352 sing N N 218 LHA C45 C16 sing N N 219 LHA C45 H451 sing N N 220 LHA C45 H452 sing N N 221 LHA C16 C66 doub Y N 222 LHA C16 C26 sing Y N 223 LHA C26 C36 doub Y N 224 LHA C26 H26 sing N N 225 LHA C36 C46 sing Y N 226 LHA C36 H36 sing N N 227 LHA C46 C56 doub Y N 228 LHA C46 H46 sing N N 229 LHA C56 C66 sing Y N 230 LHA C56 H56 sing N N 231 LHA C66 H66 sing N N 232 LHA C17 O17 doub N N 233 LHA C17 C27 sing N N 234 LHA C27 O27 sing N N 235 LHA C27 C37 sing N N 236 LHA C27 H27 sing N N 237 LHA O27 HO27 sing N N 238 LHA C37 C47 sing N N 239 LHA C37 H371 sing N N 240 LHA C37 H372 sing N N 241 LHA C47 N47 sing N N 242 LHA C47 H471 sing N N 243 LHA C47 H472 sing N N 244 LHA N47 HN71 sing N N 245 LHA N47 HN72 sing N N 246 U OP3 P sing N N 247 U OP3 HOP3 sing N N 248 U P OP1 doub N N 249 U P OP2 sing N N 250 U P "O5'" sing N N 251 U OP2 HOP2 sing N N 252 U "O5'" "C5'" sing N N 253 U "C5'" "C4'" sing N N 254 U "C5'" "H5'" sing N N 255 U "C5'" "H5''" sing N N 256 U "C4'" "O4'" sing N N 257 U "C4'" "C3'" sing N N 258 U "C4'" "H4'" sing N N 259 U "O4'" "C1'" sing N N 260 U "C3'" "O3'" sing N N 261 U "C3'" "C2'" sing N N 262 U "C3'" "H3'" sing N N 263 U "O3'" "HO3'" sing N N 264 U "C2'" "O2'" sing N N 265 U "C2'" "C1'" sing N N 266 U "C2'" "H2'" sing N N 267 U "O2'" "HO2'" sing N N 268 U "C1'" N1 sing N N 269 U "C1'" "H1'" sing N N 270 U N1 C2 sing N N 271 U N1 C6 sing N N 272 U C2 O2 doub N N 273 U C2 N3 sing N N 274 U N3 C4 sing N N 275 U N3 H3 sing N N 276 U C4 O4 doub N N 277 U C4 C5 sing N N 278 U C5 C6 doub N N 279 U C5 H5 sing N N 280 U C6 H6 sing N N 281 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2PWT 'double helix' 2PWT 'a-form double helix' 2PWT 'mismatched base pair' 2PWT 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 21 1_555 0.112 -0.129 -0.110 -2.518 -2.655 0.658 1 A_G2:C44_B A 2 ? B 44 ? 19 1 1 A C 2 1_555 B G 20 1_555 0.031 -0.242 -0.055 3.268 -7.791 -3.317 2 A_C3:G43_B A 3 ? B 43 ? 19 1 1 A G 3 1_555 B C 19 1_555 -0.060 -0.212 -0.265 -9.105 -9.911 0.435 3 A_G4:C42_B A 4 ? B 42 ? 19 1 1 A U 4 1_555 B U 18 1_555 1.691 -1.478 0.179 1.636 -7.489 7.540 4 A_U5:U41_B A 5 ? B 41 ? 16 1 1 A C 5 1_555 B G 17 1_555 0.418 -0.253 -0.350 1.412 -3.735 1.738 5 A_C6:G40_B A 6 ? B 40 ? 19 1 1 A C 7 1_555 B G 14 1_555 0.409 -0.003 0.002 7.359 -21.805 4.671 6 A_C8:G37_B A 8 ? B 37 ? 19 1 1 A A 8 1_555 B U 13 1_555 0.095 -0.132 0.284 2.516 -13.940 5.069 7 A_A9:U36_B A 9 ? B 36 ? 20 1 1 A C 9 1_555 B G 12 1_555 0.301 -0.138 -0.027 8.344 -19.058 4.740 8 A_C10:G35_B A 10 ? B 35 ? 19 1 1 A C 10 1_555 B G 11 1_555 0.038 -0.216 0.142 -1.037 -9.508 -1.589 9 A_C11:G34_B A 11 ? B 34 ? 19 1 1 A G 11 1_555 B C 10 1_555 -0.242 -0.137 0.451 6.733 -7.660 -0.903 10 A_G12:C33_B A 12 ? B 33 ? 19 1 1 A G 12 1_555 B C 9 1_555 -0.369 -0.133 0.174 -0.848 -18.188 -0.706 11 A_G13:C32_B A 13 ? B 32 ? 19 1 1 A U 13 1_555 B A 8 1_555 0.244 -0.147 0.266 -1.902 -14.265 3.640 12 A_U14:A31_B A 14 ? B 31 ? 20 1 1 A G 14 1_555 B C 7 1_555 -0.163 -0.130 -0.057 -11.454 -21.266 -0.231 13 A_G15:C30_B A 15 ? B 30 ? 19 1 1 A G 17 1_555 B C 5 1_555 -0.082 -0.150 -0.150 -5.092 -3.248 -1.815 14 A_G18:C28_B A 18 ? B 28 ? 19 1 1 A U 18 1_555 B U 4 1_555 2.818 -1.242 -0.512 -5.874 -6.429 -31.655 15 A_U19:U27_B A 19 ? B 27 ? ? ? 1 A C 19 1_555 B G 3 1_555 0.097 -0.126 -0.156 3.749 -6.956 -2.318 16 A_C20:G26_B A 20 ? B 26 ? 19 1 1 A G 20 1_555 B C 2 1_555 -0.064 -0.210 -0.166 0.068 -6.056 1.888 17 A_G21:C25_B A 21 ? B 25 ? 19 1 1 A C 21 1_555 B G 1 1_555 0.158 -0.236 -0.155 2.967 -2.230 1.776 18 A_C22:G24_B A 22 ? B 24 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 21 1_555 A C 2 1_555 B G 20 1_555 -0.260 -1.447 3.256 -1.790 2.290 29.974 -3.244 0.142 3.149 4.415 3.451 30.112 1 AA_G2C3:G43C44_BB A 2 ? B 44 ? A 3 ? B 43 ? 1 A C 2 1_555 B G 20 1_555 A G 3 1_555 B C 19 1_555 0.459 -1.915 3.528 2.673 9.923 33.311 -4.716 -0.359 2.884 16.819 -4.531 34.817 2 AA_C3G4:C42G43_BB A 3 ? B 43 ? A 4 ? B 42 ? 1 A G 3 1_555 B C 19 1_555 A U 4 1_555 B U 18 1_555 0.979 -1.901 3.012 -0.182 0.194 36.414 -3.067 -1.590 2.998 0.310 0.292 36.415 3 AA_G4U5:U41C42_BB A 4 ? B 42 ? A 5 ? B 41 ? 1 A U 4 1_555 B U 18 1_555 A C 5 1_555 B G 17 1_555 -0.439 -2.695 3.271 4.721 -0.778 29.882 -5.006 1.796 3.232 -1.497 -9.082 30.254 4 AA_U5C6:G40U41_BB A 5 ? B 41 ? A 6 ? B 40 ? 1 A C 5 1_555 B G 17 1_555 A C 7 1_555 B G 14 1_555 1.728 -3.761 6.204 -12.029 28.360 76.719 -4.110 -1.845 4.565 22.038 9.347 81.780 5 AA_C6C8:G37G40_BB A 6 ? B 40 ? A 8 ? B 37 ? 1 A C 7 1_555 B G 14 1_555 A A 8 1_555 B U 13 1_555 0.244 -1.404 3.131 -1.099 11.784 33.952 -3.775 -0.536 2.512 19.460 1.815 35.898 6 AA_C8A9:U36G37_BB A 8 ? B 37 ? A 9 ? B 36 ? 1 A A 8 1_555 B U 13 1_555 A C 9 1_555 B G 12 1_555 0.241 -1.044 3.093 3.243 2.830 31.610 -2.382 0.112 2.999 5.166 -5.918 31.894 7 AA_A9C10:G35U36_BB A 9 ? B 36 ? A 10 ? B 35 ? 1 A C 9 1_555 B G 12 1_555 A C 10 1_555 B G 11 1_555 -0.509 -1.738 3.417 -2.224 7.197 34.463 -3.935 0.511 3.030 11.971 3.699 35.252 8 AA_C10C11:G34G35_BB A 10 ? B 35 ? A 11 ? B 34 ? 1 A C 10 1_555 B G 11 1_555 A G 11 1_555 B C 10 1_555 -0.583 -1.772 2.877 -3.196 7.618 23.782 -5.879 0.579 2.266 17.810 7.471 25.157 9 AA_C11G12:C33G34_BB A 11 ? B 34 ? A 12 ? B 33 ? 1 A G 11 1_555 B C 10 1_555 A G 12 1_555 B C 9 1_555 0.167 -1.492 3.367 0.729 6.352 34.117 -3.466 -0.169 3.051 10.710 -1.229 34.694 10 AA_G12G13:C32C33_BB A 12 ? B 33 ? A 13 ? B 32 ? 1 A G 12 1_555 B C 9 1_555 A U 13 1_555 B A 8 1_555 0.422 -1.209 3.214 0.034 2.574 35.440 -2.346 -0.687 3.122 4.221 -0.056 35.530 11 AA_G13U14:A31C32_BB A 13 ? B 32 ? A 14 ? B 31 ? 1 A U 13 1_555 B A 8 1_555 A G 14 1_555 B C 7 1_555 -0.392 -1.553 3.241 2.780 12.439 33.319 -4.178 1.007 2.482 20.772 -4.643 35.609 12 AA_U14G15:C30A31_BB A 14 ? B 31 ? A 15 ? B 30 ? 1 A G 17 1_555 B C 5 1_555 A U 18 1_555 B U 4 1_555 -2.366 -2.580 3.306 2.082 -0.198 44.587 -3.378 3.306 3.209 -0.260 -2.742 44.634 13 AA_G18U19:U27C28_BB A 18 ? B 28 ? A 19 ? B 27 ? 1 A U 18 1_555 B U 4 1_555 A C 19 1_555 B G 3 1_555 0.920 -2.492 2.949 -1.499 3.459 17.993 -9.367 -3.557 2.348 10.905 4.727 18.380 14 AA_U19C20:G26U27_BB A 19 ? B 27 ? A 20 ? B 26 ? 1 A C 19 1_555 B G 3 1_555 A G 20 1_555 B C 2 1_555 0.428 -1.954 3.378 -2.589 9.852 28.905 -5.516 -1.287 2.544 19.007 4.994 30.612 15 AA_C20G21:C25G26_BB A 20 ? B 26 ? A 21 ? B 25 ? 1 A G 20 1_555 B C 2 1_555 A C 21 1_555 B G 1 1_555 0.483 -2.263 3.317 0.963 -0.219 31.920 -4.072 -0.701 3.344 -0.398 -1.750 31.935 16 AA_G21C22:G24C25_BB A 21 ? B 25 ? A 22 ? B 24 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1J7T _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 2PWT _atom_sites.fract_transf_matrix[1][1] 0.028177 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023245 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010127 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_