HEADER PROTEIN BINDING 14-MAY-07 2PX9 TITLE THE INTRINSIC AFFINITY BETWEEN E2 AND THE CYS DOMAIN OF E1 IN TITLE 2 UBIQUITIN-LIKE MODIFICATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUMO-ACTIVATING ENZYME SUBUNIT 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN-LIKE 1- ACTIVATING ENZYME E1B, ANTHRACYCLINE- COMPND 5 ASSOCIATED RESISTANCE ARX; COMPND 6 EC: 6.3.2.-; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUMO-CONJUGATING ENZYME UBC9; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SUMO-PROTEIN LIGASE, UBIQUITIN-CONJUGATING ENZYME E2 I, COMPND 11 UBIQUITIN-PROTEIN LIGASE I, UBIQUITIN CARRIER PROTEIN I, UBIQUITIN COMPND 12 CARRIER PROTEIN 9, P18; COMPND 13 EC: 6.3.2.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS UBIQUITINATION, SUMO, E1, E2, UBC9, SAE2, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, PARAMAGNETIC SPIN-LABELING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.H.WANG,W.D.HU,S.CAI,B.LEE,J.SONG,Y.CHEN REVDAT 5 22-MAY-24 2PX9 1 REMARK REVDAT 4 16-MAR-22 2PX9 1 REMARK REVDAT 3 24-FEB-09 2PX9 1 VERSN REVDAT 2 14-AUG-07 2PX9 1 JRNL REVDAT 1 24-JUL-07 2PX9 0 JRNL AUTH J.WANG,W.HU,S.CAI,B.LEE,J.SONG,Y.CHEN JRNL TITL THE INTRINSIC AFFINITY BETWEEN E2 AND THE CYS DOMAIN OF E1 JRNL TITL 2 IN UBIQUITIN-LIKE MODIFICATIONS. JRNL REF MOL.CELL V. 27 228 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17643372 JRNL DOI 10.1016/J.MOLCEL.2007.05.023 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK REMARK 3 AUTHORS : DOMINGUEZ, C. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PX9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042880. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.15-0.6MM E1 CYS DOMAIN, 0.15 REMARK 210 -0.7MM UBC9, 50MM PHOSPHATE REMARK 210 BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TROSY-HSQC; TROSY-HNCACB; TROSY REMARK 210 -HN(CO)CACB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 98 HZ3 LYS B 101 1.58 REMARK 500 OE1 GLU B 42 HZ3 LYS B 59 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 177 -100.97 -86.61 REMARK 500 1 GLN A 204 46.80 -86.37 REMARK 500 1 ALA A 216 -99.65 -121.23 REMARK 500 1 ALA A 222 109.76 71.86 REMARK 500 1 ALA A 226 44.16 -95.38 REMARK 500 1 ASP A 234 42.35 -177.25 REMARK 500 1 LYS A 260 -42.50 -139.26 REMARK 500 1 LYS A 275 -41.28 -155.24 REMARK 500 1 SER A 289 63.20 -101.52 REMARK 500 1 GLN A 300 119.86 -162.87 REMARK 500 1 PRO B 32 156.82 -46.06 REMARK 500 1 LYS B 101 -105.65 -103.30 REMARK 500 2 ASN A 177 -75.33 -88.22 REMARK 500 2 PRO A 179 56.92 -95.20 REMARK 500 2 GLU A 181 135.57 178.80 REMARK 500 2 ALA A 202 -92.51 -88.47 REMARK 500 2 GLN A 204 43.08 -85.06 REMARK 500 2 TRP A 217 -147.12 -90.82 REMARK 500 2 PRO A 219 -146.70 -102.94 REMARK 500 2 ASN A 230 -97.84 -137.27 REMARK 500 2 ILE A 235 -73.34 -113.12 REMARK 500 2 LYS A 257 -69.50 -109.41 REMARK 500 2 LYS A 260 -78.56 -139.35 REMARK 500 2 ARG A 274 -45.66 -132.47 REMARK 500 2 GLU A 293 -83.56 -85.77 REMARK 500 2 THR A 294 -169.76 -127.79 REMARK 500 2 ALA A 296 -68.55 -156.39 REMARK 500 2 GLN A 300 75.43 -153.14 REMARK 500 2 ASN A 301 -74.97 -106.25 REMARK 500 2 ASP B 33 -28.92 75.72 REMARK 500 2 LYS B 101 -124.09 -111.24 REMARK 500 2 GLU B 122 77.48 -117.07 REMARK 500 2 PRO B 157 109.73 -55.45 REMARK 500 3 ASN A 177 -103.01 -89.00 REMARK 500 3 SER A 180 -81.57 -67.11 REMARK 500 3 ALA A 211 44.89 -100.38 REMARK 500 3 ALA A 215 -153.12 -89.51 REMARK 500 3 PRO A 219 -95.09 -102.66 REMARK 500 3 ALA A 222 109.29 78.67 REMARK 500 3 ASP A 234 85.14 174.36 REMARK 500 3 LYS A 260 -72.68 -153.37 REMARK 500 3 ARG A 274 -48.58 -139.29 REMARK 500 3 GLU A 293 -71.20 -159.10 REMARK 500 3 THR A 294 -93.92 -109.08 REMARK 500 3 ASN A 295 -57.88 -123.91 REMARK 500 3 SER A 297 -167.26 -164.90 REMARK 500 3 PRO A 303 107.34 -55.84 REMARK 500 3 LEU A 313 -153.93 -94.79 REMARK 500 3 PRO B 32 153.79 -45.67 REMARK 500 3 ASP B 100 2.55 -68.25 REMARK 500 REMARK 500 THIS ENTRY HAS 320 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2PX9 A 166 382 UNP Q9UBT2 SAE2_HUMAN 166 382 DBREF 2PX9 B 1 158 UNP P63279 UBC9_HUMAN 1 158 SEQRES 1 A 217 THR GLN ARG THR PHE PRO GLY CYS THR ILE ARG ASN THR SEQRES 2 A 217 PRO SER GLU PRO ILE HIS CYS ILE VAL TRP ALA LYS TYR SEQRES 3 A 217 LEU PHE ASN GLN LEU PHE GLY GLU GLU ASP ALA ASP GLN SEQRES 4 A 217 GLU VAL SER PRO ASP ARG ALA ASP PRO GLU ALA ALA TRP SEQRES 5 A 217 GLU PRO THR GLU ALA GLU ALA ARG ALA ARG ALA SER ASN SEQRES 6 A 217 GLU ASP GLY ASP ILE LYS ARG ILE SER THR LYS GLU TRP SEQRES 7 A 217 ALA LYS SER THR GLY TYR ASP PRO VAL LYS LEU PHE THR SEQRES 8 A 217 LYS LEU PHE LYS ASP ASP ILE ARG TYR LEU LEU THR MET SEQRES 9 A 217 ASP LYS LEU TRP ARG LYS ARG LYS PRO PRO VAL PRO LEU SEQRES 10 A 217 ASP TRP ALA GLU VAL GLN SER GLN GLY GLU GLU THR ASN SEQRES 11 A 217 ALA SER ASP GLN GLN ASN GLU PRO GLN LEU GLY LEU LYS SEQRES 12 A 217 ASP GLN GLN VAL LEU ASP VAL LYS SER TYR ALA ARG LEU SEQRES 13 A 217 PHE SER LYS SER ILE GLU THR LEU ARG VAL HIS LEU ALA SEQRES 14 A 217 GLU LYS GLY ASP GLY ALA GLU LEU ILE TRP ASP LYS ASP SEQRES 15 A 217 ASP PRO SER ALA MET ASP PHE VAL THR SER ALA ALA ASN SEQRES 16 A 217 LEU ARG MET HIS ILE PHE SER MET ASN MET LYS SER ARG SEQRES 17 A 217 PHE ASP ILE LYS SER MET ALA GLY ASN SEQRES 1 B 158 MET SER GLY ILE ALA LEU SER ARG LEU ALA GLN GLU ARG SEQRES 2 B 158 LYS ALA TRP ARG LYS ASP HIS PRO PHE GLY PHE VAL ALA SEQRES 3 B 158 VAL PRO THR LYS ASN PRO ASP GLY THR MET ASN LEU MET SEQRES 4 B 158 ASN TRP GLU CYS ALA ILE PRO GLY LYS LYS GLY THR PRO SEQRES 5 B 158 TRP GLU GLY GLY LEU PHE LYS LEU ARG MET LEU PHE LYS SEQRES 6 B 158 ASP ASP TYR PRO SER SER PRO PRO LYS CYS LYS PHE GLU SEQRES 7 B 158 PRO PRO LEU PHE HIS PRO ASN VAL TYR PRO SER GLY THR SEQRES 8 B 158 VAL CYS LEU SER ILE LEU GLU GLU ASP LYS ASP TRP ARG SEQRES 9 B 158 PRO ALA ILE THR ILE LYS GLN ILE LEU LEU GLY ILE GLN SEQRES 10 B 158 GLU LEU LEU ASN GLU PRO ASN ILE GLN ASP PRO ALA GLN SEQRES 11 B 158 ALA GLU ALA TYR THR ILE TYR CYS GLN ASN ARG VAL GLU SEQRES 12 B 158 TYR GLU LYS ARG VAL ARG ALA GLN ALA LYS LYS PHE ALA SEQRES 13 B 158 PRO SER HELIX 1 1 PRO A 171 ASN A 177 1 7 HELIX 2 2 GLU A 181 GLY A 198 1 18 HELIX 3 3 SER A 239 THR A 247 1 9 HELIX 4 4 ASP A 250 PHE A 259 1 10 HELIX 5 5 ASP A 261 LEU A 267 1 7 HELIX 6 6 THR A 268 TRP A 273 5 6 HELIX 7 7 ASP A 283 SER A 289 1 7 HELIX 8 8 LEU A 307 GLN A 311 5 5 HELIX 9 9 ASP A 314 GLY A 337 1 24 HELIX 10 10 ASP A 348 PHE A 366 1 19 HELIX 11 11 SER A 372 ASN A 382 1 11 HELIX 12 12 GLY B 3 ASP B 19 1 17 HELIX 13 13 LEU B 94 GLU B 98 5 5 HELIX 14 14 THR B 108 GLU B 122 1 15 HELIX 15 15 GLN B 130 ASN B 140 1 11 HELIX 16 16 ASN B 140 PHE B 155 1 16 SHEET 1 A 4 PRO B 28 THR B 29 0 SHEET 2 A 4 ASN B 37 PRO B 46 -1 O ASN B 40 N THR B 29 SHEET 3 A 4 LEU B 57 LEU B 63 -1 O PHE B 58 N ILE B 45 SHEET 4 A 4 CYS B 75 PHE B 77 -1 O LYS B 76 N ARG B 61 CISPEP 1 GLU A 218 PRO A 219 1 -1.47 CISPEP 2 TYR B 68 PRO B 69 1 0.41 CISPEP 3 GLU B 78 PRO B 79 1 -0.50 CISPEP 4 GLU A 218 PRO A 219 2 -0.33 CISPEP 5 TYR B 68 PRO B 69 2 0.79 CISPEP 6 GLU B 78 PRO B 79 2 0.00 CISPEP 7 GLU A 218 PRO A 219 3 -1.77 CISPEP 8 TYR B 68 PRO B 69 3 0.45 CISPEP 9 GLU B 78 PRO B 79 3 -0.02 CISPEP 10 GLU A 218 PRO A 219 4 -1.13 CISPEP 11 TYR B 68 PRO B 69 4 0.61 CISPEP 12 GLU B 78 PRO B 79 4 -0.25 CISPEP 13 GLU A 218 PRO A 219 5 -1.72 CISPEP 14 TYR B 68 PRO B 69 5 1.13 CISPEP 15 GLU B 78 PRO B 79 5 -0.27 CISPEP 16 GLU A 218 PRO A 219 6 -1.82 CISPEP 17 TYR B 68 PRO B 69 6 0.41 CISPEP 18 GLU B 78 PRO B 79 6 -0.18 CISPEP 19 GLU A 218 PRO A 219 7 -0.04 CISPEP 20 TYR B 68 PRO B 69 7 0.57 CISPEP 21 GLU B 78 PRO B 79 7 -0.04 CISPEP 22 GLU A 218 PRO A 219 8 -1.21 CISPEP 23 TYR B 68 PRO B 69 8 0.40 CISPEP 24 GLU B 78 PRO B 79 8 0.34 CISPEP 25 GLU A 218 PRO A 219 9 -0.92 CISPEP 26 TYR B 68 PRO B 69 9 0.53 CISPEP 27 GLU B 78 PRO B 79 9 -0.44 CISPEP 28 GLU A 218 PRO A 219 10 0.13 CISPEP 29 TYR B 68 PRO B 69 10 0.72 CISPEP 30 GLU B 78 PRO B 79 10 -0.03 CISPEP 31 GLU A 218 PRO A 219 11 -0.26 CISPEP 32 TYR B 68 PRO B 69 11 0.47 CISPEP 33 GLU B 78 PRO B 79 11 -0.15 CISPEP 34 GLU A 218 PRO A 219 12 -0.14 CISPEP 35 TYR B 68 PRO B 69 12 0.37 CISPEP 36 GLU B 78 PRO B 79 12 0.38 CISPEP 37 GLU A 218 PRO A 219 13 -0.51 CISPEP 38 TYR B 68 PRO B 69 13 0.43 CISPEP 39 GLU B 78 PRO B 79 13 0.14 CISPEP 40 GLU A 218 PRO A 219 14 -1.63 CISPEP 41 TYR B 68 PRO B 69 14 1.11 CISPEP 42 GLU B 78 PRO B 79 14 0.23 CISPEP 43 GLU A 218 PRO A 219 15 -1.43 CISPEP 44 TYR B 68 PRO B 69 15 0.39 CISPEP 45 GLU B 78 PRO B 79 15 -0.04 CISPEP 46 GLU A 218 PRO A 219 16 0.59 CISPEP 47 TYR B 68 PRO B 69 16 0.16 CISPEP 48 GLU B 78 PRO B 79 16 -0.59 CISPEP 49 GLU A 218 PRO A 219 17 -0.32 CISPEP 50 TYR B 68 PRO B 69 17 0.55 CISPEP 51 GLU B 78 PRO B 79 17 0.24 CISPEP 52 GLU A 218 PRO A 219 18 -0.70 CISPEP 53 TYR B 68 PRO B 69 18 1.02 CISPEP 54 GLU B 78 PRO B 79 18 -0.52 CISPEP 55 GLU A 218 PRO A 219 19 -1.72 CISPEP 56 TYR B 68 PRO B 69 19 0.28 CISPEP 57 GLU B 78 PRO B 79 19 0.27 CISPEP 58 GLU A 218 PRO A 219 20 -1.35 CISPEP 59 TYR B 68 PRO B 69 20 0.57 CISPEP 60 GLU B 78 PRO B 79 20 -0.15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1