HEADER FLUORESCENT PROTEIN 14-MAY-07 2PXS TITLE CRYSTAL STRUCTURE OF N66D MUTANT OF GREEN FLUORESCENT PROTEIN FROM TITLE 2 ZOANTHUS SP. AT 2.2 A RESOLUTION (MATURE STATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GFP-LIKE FLUORESCENT CHROMOPROTEIN FP506; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ZFP506; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOANTHUS SP.; SOURCE 3 ORGANISM_TAXID: 105402; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE30-ZGFP506_N66D KEYWDS ZOANTHUS FAMILY, RED FLUORESCENT PROTEIN, GREEN FLUORESCENT PROTEIN, KEYWDS 2 CHROMOPHORE STRUCTURE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.V.PLETNEV,N.V.PLETNEVA,T.V.TIKHONOVA,V.Z.PLETNEV REVDAT 6 03-APR-24 2PXS 1 REMARK REVDAT 5 15-NOV-23 2PXS 1 REMARK SEQADV ATOM REVDAT 4 18-OCT-17 2PXS 1 REMARK REVDAT 3 24-FEB-09 2PXS 1 VERSN REVDAT 2 02-OCT-07 2PXS 1 JRNL REVDAT 1 25-SEP-07 2PXS 0 JRNL AUTH N.PLETNEVA,V.PLETNEV,T.TIKHONOVA,A.A.PAKHOMOV,V.POPOV, JRNL AUTH 2 V.I.MARTYNOV,A.WLODAWER,Z.DAUTER,S.PLETNEV JRNL TITL REFINED CRYSTAL STRUCTURES OF RED AND GREEN FLUORESCENT JRNL TITL 2 PROTEINS FROM THE BUTTON POLYP ZOANTHUS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 1082 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17881826 JRNL DOI 10.1107/S0907444907042461 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 41863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2160 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.249 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3778 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5116 ; 1.793 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 7.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;35.474 ;24.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 638 ;14.582 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.770 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2932 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1641 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2499 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2336 ; 1.118 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3670 ; 1.944 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1706 ; 2.954 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1446 ; 4.512 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: ZGFP506 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE, 1.8 M TRI REMARK 280 -AMMONIUM CITRATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 180.81133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.40567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 180.81133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.40567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 180.81133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 90.40567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 180.81133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.40567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -101.51000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -101.51000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -50.75500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -87.91024 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -90.40567 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -50.75500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 -87.91024 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -90.40567 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C3 DYG B 66 N ASN B 69 1.32 REMARK 500 C3 DYG A 66 N ASN A 69 1.32 REMARK 500 C3 XYG B 66 N ASN B 69 1.33 REMARK 500 C PHE A 65 N1 DYG A 66 1.33 REMARK 500 C3 XYG A 66 N ASN A 69 1.33 REMARK 500 C PHE B 65 N1 DYG B 66 1.33 REMARK 500 C PHE B 65 N1 XYG B 66 1.34 REMARK 500 C PHE A 65 N1 XYG A 66 1.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 234 O HOH A 341 8555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 177 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 98.36 -44.30 REMARK 500 ASN A 144 158.92 70.43 REMARK 500 ASP A 211 -155.18 -122.46 REMARK 500 ASP B 143 55.44 -146.04 REMARK 500 ASN B 144 161.48 72.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 4 LYS A 5 148.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FL1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RED FLUORESCENT PROTEIN FROM ZOANTHUS SP2 AT REMARK 900 2.4 A RESOLUTION REMARK 900 RELATED ID: 2ICR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RED FLUORESCENT PROTEIN FROM ZOANTHUS SP2 AT REMARK 900 1.5 A RESOLUTION REMARK 900 RELATED ID: 2OJK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GREEN FLUORESCENT PROTEIN FROM ZOANTHUS SP AT REMARK 900 2.2 A RESOLUTION REMARK 900 RELATED ID: 2OGR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YELLOW FLUORESCENT PROTEIN FROM ZOANTHUS SP AT REMARK 900 1.8 A RESOLUTION REMARK 900 RELATED ID: 2PXW RELATED DB: PDB DBREF 2PXS A 4 231 UNP Q9U6Y5 GFPL1_ZOASP 4 231 DBREF 2PXS B 4 231 UNP Q9U6Y5 GFPL1_ZOASP 4 231 SEQADV 2PXS XYG A 66 UNP Q9U6Y5 ASN 66 CHROMOPHORE SEQADV 2PXS XYG A 66 UNP Q9U6Y5 TYR 67 CHROMOPHORE SEQADV 2PXS XYG A 66 UNP Q9U6Y5 GLY 68 CHROMOPHORE SEQADV 2PXS XYG B 66 UNP Q9U6Y5 ASN 66 CHROMOPHORE SEQADV 2PXS XYG B 66 UNP Q9U6Y5 TYR 67 CHROMOPHORE SEQADV 2PXS XYG B 66 UNP Q9U6Y5 GLY 68 CHROMOPHORE SEQRES 1 A 226 SER LYS HIS GLY LEU THR LYS GLU MET THR MET LYS TYR SEQRES 2 A 226 ARG MET GLU GLY CYS VAL ASP GLY HIS LYS PHE VAL ILE SEQRES 3 A 226 THR GLY GLU GLY ILE GLY TYR PRO PHE LYS GLY LYS GLN SEQRES 4 A 226 ALA ILE ASN LEU CYS VAL VAL GLU GLY GLY PRO LEU PRO SEQRES 5 A 226 PHE ALA GLU ASP ILE LEU SER ALA ALA PHE XYG ASN ARG SEQRES 6 A 226 VAL PHE THR GLU TYR PRO GLN ASP ILE VAL ASP TYR PHE SEQRES 7 A 226 LYS ASN SER CYS PRO ALA GLY TYR THR TRP ASP ARG SER SEQRES 8 A 226 PHE LEU PHE GLU ASP GLY ALA VAL CYS ILE CYS ASN ALA SEQRES 9 A 226 ASP ILE THR VAL SER VAL GLU GLU ASN CYS MET TYR HIS SEQRES 10 A 226 GLU SER LYS PHE TYR GLY VAL ASN PHE PRO ALA ASP GLY SEQRES 11 A 226 PRO VAL MET LYS LYS MET THR ASP ASN TRP GLU PRO SER SEQRES 12 A 226 CYS GLU LYS ILE ILE PRO VAL PRO LYS GLN GLY ILE LEU SEQRES 13 A 226 LYS GLY ASP VAL SER MET TYR LEU LEU LEU LYS ASP GLY SEQRES 14 A 226 GLY ARG LEU ARG CYS GLN PHE ASP THR VAL TYR LYS ALA SEQRES 15 A 226 LYS SER VAL PRO ARG LYS MET PRO ASP TRP HIS PHE ILE SEQRES 16 A 226 GLN HIS LYS LEU THR ARG GLU ASP ARG SER ASP ALA LYS SEQRES 17 A 226 ASN GLN LYS TRP HIS LEU THR GLU HIS ALA ILE ALA SER SEQRES 18 A 226 GLY SER ALA LEU PRO SEQRES 1 B 226 SER LYS HIS GLY LEU THR LYS GLU MET THR MET LYS TYR SEQRES 2 B 226 ARG MET GLU GLY CYS VAL ASP GLY HIS LYS PHE VAL ILE SEQRES 3 B 226 THR GLY GLU GLY ILE GLY TYR PRO PHE LYS GLY LYS GLN SEQRES 4 B 226 ALA ILE ASN LEU CYS VAL VAL GLU GLY GLY PRO LEU PRO SEQRES 5 B 226 PHE ALA GLU ASP ILE LEU SER ALA ALA PHE XYG ASN ARG SEQRES 6 B 226 VAL PHE THR GLU TYR PRO GLN ASP ILE VAL ASP TYR PHE SEQRES 7 B 226 LYS ASN SER CYS PRO ALA GLY TYR THR TRP ASP ARG SER SEQRES 8 B 226 PHE LEU PHE GLU ASP GLY ALA VAL CYS ILE CYS ASN ALA SEQRES 9 B 226 ASP ILE THR VAL SER VAL GLU GLU ASN CYS MET TYR HIS SEQRES 10 B 226 GLU SER LYS PHE TYR GLY VAL ASN PHE PRO ALA ASP GLY SEQRES 11 B 226 PRO VAL MET LYS LYS MET THR ASP ASN TRP GLU PRO SER SEQRES 12 B 226 CYS GLU LYS ILE ILE PRO VAL PRO LYS GLN GLY ILE LEU SEQRES 13 B 226 LYS GLY ASP VAL SER MET TYR LEU LEU LEU LYS ASP GLY SEQRES 14 B 226 GLY ARG LEU ARG CYS GLN PHE ASP THR VAL TYR LYS ALA SEQRES 15 B 226 LYS SER VAL PRO ARG LYS MET PRO ASP TRP HIS PHE ILE SEQRES 16 B 226 GLN HIS LYS LEU THR ARG GLU ASP ARG SER ASP ALA LYS SEQRES 17 B 226 ASN GLN LYS TRP HIS LEU THR GLU HIS ALA ILE ALA SER SEQRES 18 B 226 GLY SER ALA LEU PRO MODRES 2PXS XYG A 66 ASP MODRES 2PXS XYG A 66 TYR MODRES 2PXS XYG A 66 GLY MODRES 2PXS DYG A 66 ASP MODRES 2PXS DYG A 66 TYR MODRES 2PXS DYG A 66 GLY MODRES 2PXS XYG B 66 ASP MODRES 2PXS XYG B 66 TYR MODRES 2PXS XYG B 66 GLY MODRES 2PXS DYG B 66 ASP MODRES 2PXS DYG B 66 TYR MODRES 2PXS DYG B 66 GLY HET XYG A 66 20 HET DYG A 66 23 HET XYG B 66 20 HET DYG B 66 23 HETNAM XYG [(4Z)-2-[(1Z)-ETHANIMIDOYL]-4-(4-HYDROXYBENZYLIDENE)-5- HETNAM 2 XYG OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID HETNAM DYG (3S)-3-AMINO-3-[(4Z)-1-(CARBOXYMETHYL)-4-[(4- HETNAM 2 DYG HYDROXYPHENYL)METHYLIDENE]-5-OXO-IMIDAZOL-2- HETNAM 3 DYG YL]PROPANOIC ACID HETSYN XYG CHROMOPHORE (DECARBOXYLATED ASP-TYR-GLY) HETSYN DYG CHROMOPHORE (ASP-TYR-GLY) FORMUL 1 XYG 2(C14 H13 N3 O4) FORMUL 1 DYG 2(C15 H15 N3 O6) FORMUL 3 HOH *238(H2 O) HELIX 1 1 SER A 4 LEU A 8 5 5 HELIX 2 2 ALA A 57 PHE A 65 5 9 HELIX 3 3 PHE A 83 CYS A 87 5 5 HELIX 4 4 SER B 4 LEU B 8 5 5 HELIX 5 5 PRO B 37 LYS B 39 5 3 HELIX 6 6 ALA B 57 PHE B 65 5 9 HELIX 7 7 ASP B 81 SER B 86 1 6 SHEET 1 A13 THR A 142 TRP A 145 0 SHEET 2 A13 LEU A 161 LEU A 171 -1 O LEU A 170 N ASP A 143 SHEET 3 A13 ARG A 176 ALA A 187 -1 O CYS A 179 N MET A 167 SHEET 4 A13 TYR A 91 PHE A 99 -1 N THR A 92 O LYS A 186 SHEET 5 A13 VAL A 104 SER A 114 -1 O CYS A 107 N ARG A 95 SHEET 6 A13 CYS A 119 VAL A 129 -1 O TYR A 121 N THR A 112 SHEET 7 A13 MET A 12 VAL A 22 1 N THR A 13 O MET A 120 SHEET 8 A13 HIS A 25 TYR A 36 -1 O GLY A 35 N MET A 12 SHEET 9 A13 LYS A 41 GLU A 50 -1 O VAL A 49 N VAL A 28 SHEET 10 A13 LYS A 216 SER A 226 -1 O LEU A 219 N ILE A 44 SHEET 11 A13 HIS A 198 ASP A 208 -1 N PHE A 199 O SER A 226 SHEET 12 A13 SER A 148 PRO A 154 -1 N ILE A 152 O HIS A 198 SHEET 13 A13 LEU A 161 LEU A 171 -1 O LYS A 162 N ILE A 153 SHEET 1 B13 THR B 142 TRP B 145 0 SHEET 2 B13 LEU B 161 LEU B 171 -1 O LEU B 170 N ASP B 143 SHEET 3 B13 ARG B 176 ALA B 187 -1 O LEU B 177 N LEU B 169 SHEET 4 B13 TYR B 91 PHE B 99 -1 N THR B 92 O LYS B 186 SHEET 5 B13 VAL B 104 SER B 114 -1 O ALA B 109 N TRP B 93 SHEET 6 B13 CYS B 119 VAL B 129 -1 O CYS B 119 N SER B 114 SHEET 7 B13 MET B 12 VAL B 22 1 N CYS B 21 O GLY B 128 SHEET 8 B13 HIS B 25 TYR B 36 -1 O ILE B 29 N MET B 18 SHEET 9 B13 LYS B 41 GLU B 50 -1 O CYS B 47 N THR B 30 SHEET 10 B13 LYS B 216 SER B 226 -1 O TRP B 217 N LEU B 46 SHEET 11 B13 HIS B 198 ASP B 208 -1 N PHE B 199 O SER B 226 SHEET 12 B13 SER B 148 PRO B 154 -1 N GLU B 150 O ILE B 200 SHEET 13 B13 LEU B 161 LEU B 171 -1 O LYS B 162 N ILE B 153 CISPEP 1 GLY A 52 PRO A 53 0 -2.93 CISPEP 2 CYS A 87 PRO A 88 0 2.05 CISPEP 3 GLY B 52 PRO B 53 0 -7.55 CISPEP 4 CYS B 87 PRO B 88 0 5.53 CRYST1 101.510 101.510 271.217 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009851 0.005688 0.000000 0.00000 SCALE2 0.000000 0.011375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003687 0.00000