data_2PZ9 # _entry.id 2PZ9 # _audit.revision_id 1 _audit.creation_date 2007-05-17 _audit.update_record 'initial release' # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PZ9 pdb_00002pz9 10.2210/pdb2pz9/pdb RCSB RCSB042950 ? ? WWPDB D_1000042950 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC6284 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2PZ9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Filippova, E.V.' 1 ? 'Chruszcz, M.' 2 ? 'Xu, X.' 3 ? 'Zheng, H.' 4 ? 'Cymborowski, M.' 5 ? 'Savchenko, A.' 6 ? 'Edwards, A.' 7 ? 'Joachimiak, A.' 8 ? 'Minor, W.' 9 0000-0001-7075-7090 'Midwest Center for Structural Genomics (MCSG)' 10 ? # _citation.id primary _citation.title 'In situ proteolysis for protein crystallization and structure determination.' _citation.journal_abbrev Nat.Methods _citation.journal_volume 4 _citation.page_first 1019 _citation.page_last 1021 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1548-7091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17982461 _citation.pdbx_database_id_DOI 10.1038/nmeth1118 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dong, A.' 1 ? primary 'Xu, X.' 2 ? primary 'Edwards, A.M.' 3 ? primary 'Chang, C.' 4 ? primary 'Chruszcz, M.' 5 ? primary 'Cuff, M.' 6 ? primary 'Cymborowski, M.' 7 ? primary 'Di Leo, R.' 8 ? primary 'Egorova, O.' 9 ? primary 'Evdokimova, E.' 10 ? primary 'Filippova, E.' 11 ? primary 'Gu, J.' 12 ? primary 'Guthrie, J.' 13 ? primary 'Ignatchenko, A.' 14 ? primary 'Joachimiak, A.' 15 ? primary 'Klostermann, N.' 16 ? primary 'Kim, Y.' 17 ? primary 'Korniyenko, Y.' 18 ? primary 'Minor, W.' 19 0000-0001-7075-7090 primary 'Que, Q.' 20 ? primary 'Savchenko, A.' 21 ? primary 'Skarina, T.' 22 ? primary 'Tan, K.' 23 ? primary 'Yakunin, A.' 24 ? primary 'Yee, A.' 25 ? primary 'Yim, V.' 26 ? primary 'Zhang, R.' 27 ? primary 'Zheng, H.' 28 ? primary 'Akutsu, M.' 29 ? primary 'Arrowsmith, C.' 30 ? primary 'Avvakumov, G.V.' 31 ? primary 'Bochkarev, A.' 32 ? primary 'Dahlgren, L.G.' 33 ? primary 'Dhe-Paganon, S.' 34 ? primary 'Dimov, S.' 35 ? primary 'Dombrovski, L.' 36 ? primary 'Finerty, P.' 37 ? primary 'Flodin, S.' 38 ? primary 'Flores, A.' 39 ? primary 'Graslund, S.' 40 ? primary 'Hammerstrom, M.' 41 ? primary 'Herman, M.D.' 42 ? primary 'Hong, B.S.' 43 ? primary 'Hui, R.' 44 ? primary 'Johansson, I.' 45 ? primary 'Liu, Y.' 46 ? primary 'Nilsson, M.' 47 ? primary 'Nedyalkova, L.' 48 ? primary 'Nordlund, P.' 49 ? primary 'Nyman, T.' 50 ? primary 'Min, J.' 51 ? primary 'Ouyang, H.' 52 ? primary 'Park, H.W.' 53 ? primary 'Qi, C.' 54 ? primary 'Rabeh, W.' 55 ? primary 'Shen, L.' 56 ? primary 'Shen, Y.' 57 ? primary 'Sukumard, D.' 58 ? primary 'Tempel, W.' 59 ? primary 'Tong, Y.' 60 ? primary 'Tresagues, L.' 61 ? primary 'Vedadi, M.' 62 ? primary 'Walker, J.R.' 63 ? primary 'Weigelt, J.' 64 ? primary 'Welin, M.' 65 ? primary 'Wu, H.' 66 ? primary 'Xiao, T.' 67 ? primary 'Zeng, H.' 68 ? primary 'Zhu, H.' 69 ? # _cell.entry_id 2PZ9 _cell.length_a 66.960 _cell.length_b 66.960 _cell.length_c 104.345 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PZ9 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative regulatory protein' 24736.199 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)VAYPGP(MSE)PRSPSPGQTPDAPTSGGGSTDSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFR SKEALYAHVAERETTALIEATQLDPADLPGYAGILFDHFAARPDHYRLITWGRLELAESADNTSGPLQATIAGKLDKLRD AQRIGLLDPAWDPVDVLALINQIA(MSE)TWAGQPEIAAAAADQAVDPSVTARRAALVTAVEH(MSE)FPRPDRDQRPNR LT ; _entity_poly.pdbx_seq_one_letter_code_can ;MVAYPGPMPRSPSPGQTPDAPTSGGGSTDSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAH VAERETTALIEATQLDPADLPGYAGILFDHFAARPDHYRLITWGRLELAESADNTSGPLQATIAGKLDKLRDAQRIGLLD PAWDPVDVLALINQIAMTWAGQPEIAAAAADQAVDPSVTARRAALVTAVEHMFPRPDRDQRPNRLT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC6284 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 VAL n 1 3 ALA n 1 4 TYR n 1 5 PRO n 1 6 GLY n 1 7 PRO n 1 8 MSE n 1 9 PRO n 1 10 ARG n 1 11 SER n 1 12 PRO n 1 13 SER n 1 14 PRO n 1 15 GLY n 1 16 GLN n 1 17 THR n 1 18 PRO n 1 19 ASP n 1 20 ALA n 1 21 PRO n 1 22 THR n 1 23 SER n 1 24 GLY n 1 25 GLY n 1 26 GLY n 1 27 SER n 1 28 THR n 1 29 ASP n 1 30 SER n 1 31 THR n 1 32 ARG n 1 33 GLN n 1 34 ARG n 1 35 ILE n 1 36 VAL n 1 37 ALA n 1 38 ALA n 1 39 ALA n 1 40 LYS n 1 41 GLU n 1 42 GLU n 1 43 PHE n 1 44 ALA n 1 45 ARG n 1 46 HIS n 1 47 GLY n 1 48 ILE n 1 49 ALA n 1 50 GLY n 1 51 ALA n 1 52 ARG n 1 53 VAL n 1 54 ASP n 1 55 ARG n 1 56 ILE n 1 57 ALA n 1 58 LYS n 1 59 GLN n 1 60 ALA n 1 61 ARG n 1 62 THR n 1 63 SER n 1 64 LYS n 1 65 GLU n 1 66 ARG n 1 67 VAL n 1 68 TYR n 1 69 ALA n 1 70 TYR n 1 71 PHE n 1 72 ARG n 1 73 SER n 1 74 LYS n 1 75 GLU n 1 76 ALA n 1 77 LEU n 1 78 TYR n 1 79 ALA n 1 80 HIS n 1 81 VAL n 1 82 ALA n 1 83 GLU n 1 84 ARG n 1 85 GLU n 1 86 THR n 1 87 THR n 1 88 ALA n 1 89 LEU n 1 90 ILE n 1 91 GLU n 1 92 ALA n 1 93 THR n 1 94 GLN n 1 95 LEU n 1 96 ASP n 1 97 PRO n 1 98 ALA n 1 99 ASP n 1 100 LEU n 1 101 PRO n 1 102 GLY n 1 103 TYR n 1 104 ALA n 1 105 GLY n 1 106 ILE n 1 107 LEU n 1 108 PHE n 1 109 ASP n 1 110 HIS n 1 111 PHE n 1 112 ALA n 1 113 ALA n 1 114 ARG n 1 115 PRO n 1 116 ASP n 1 117 HIS n 1 118 TYR n 1 119 ARG n 1 120 LEU n 1 121 ILE n 1 122 THR n 1 123 TRP n 1 124 GLY n 1 125 ARG n 1 126 LEU n 1 127 GLU n 1 128 LEU n 1 129 ALA n 1 130 GLU n 1 131 SER n 1 132 ALA n 1 133 ASP n 1 134 ASN n 1 135 THR n 1 136 SER n 1 137 GLY n 1 138 PRO n 1 139 LEU n 1 140 GLN n 1 141 ALA n 1 142 THR n 1 143 ILE n 1 144 ALA n 1 145 GLY n 1 146 LYS n 1 147 LEU n 1 148 ASP n 1 149 LYS n 1 150 LEU n 1 151 ARG n 1 152 ASP n 1 153 ALA n 1 154 GLN n 1 155 ARG n 1 156 ILE n 1 157 GLY n 1 158 LEU n 1 159 LEU n 1 160 ASP n 1 161 PRO n 1 162 ALA n 1 163 TRP n 1 164 ASP n 1 165 PRO n 1 166 VAL n 1 167 ASP n 1 168 VAL n 1 169 LEU n 1 170 ALA n 1 171 LEU n 1 172 ILE n 1 173 ASN n 1 174 GLN n 1 175 ILE n 1 176 ALA n 1 177 MSE n 1 178 THR n 1 179 TRP n 1 180 ALA n 1 181 GLY n 1 182 GLN n 1 183 PRO n 1 184 GLU n 1 185 ILE n 1 186 ALA n 1 187 ALA n 1 188 ALA n 1 189 ALA n 1 190 ALA n 1 191 ASP n 1 192 GLN n 1 193 ALA n 1 194 VAL n 1 195 ASP n 1 196 PRO n 1 197 SER n 1 198 VAL n 1 199 THR n 1 200 ALA n 1 201 ARG n 1 202 ARG n 1 203 ALA n 1 204 ALA n 1 205 LEU n 1 206 VAL n 1 207 THR n 1 208 ALA n 1 209 VAL n 1 210 GLU n 1 211 HIS n 1 212 MSE n 1 213 PHE n 1 214 PRO n 1 215 ARG n 1 216 PRO n 1 217 ASP n 1 218 ARG n 1 219 ASP n 1 220 GLN n 1 221 ARG n 1 222 PRO n 1 223 ASN n 1 224 ARG n 1 225 LEU n 1 226 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptomyces _entity_src_gen.pdbx_gene_src_gene 'SCO4942, 2SCK31.02c' _entity_src_gen.gene_src_species 'Streptomyces coelicolor' _entity_src_gen.gene_src_strain 'A3(2), M145' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces coelicolor A3(2)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 100226 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-471 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) GOLD MAGIC' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'p15TV LIC' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9EWE9_STRCO _struct_ref.pdbx_db_accession Q9EWE9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVAYPGPMPRSPSPGQTPDAPTSGGGSTDSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAH VAERETTALIEATQLDPADLPGYAGILFDHFAARPDHYRLITWGRLELAESADNTSGPLQATIAGKLDKLRDAQRIGLLD PAWDPVDVLALINQIAMTWAGQPEIAAAAADQAVDPSVTARRAALVTAVEHMFPRPDRDQRPNRLT ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PZ9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 226 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9EWE9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 226 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 226 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PZ9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl pH 8.5, 2.5M Ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-02-09 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI-111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9792 1.0 2 0.9794 1.0 # _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9792, 0.9794' _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 2PZ9 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 38.780 _reflns.d_resolution_high 2.800 _reflns.number_obs 7016 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.084 _reflns.pdbx_netI_over_sigmaI 46.9850 _reflns.B_iso_Wilson_estimate 84.38 _reflns.pdbx_redundancy 10.700 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 96.4 _reflns_shell.Rmerge_I_obs 0.299 _reflns_shell.pdbx_Rsym_value 0.299 _reflns_shell.meanI_over_sigI_obs 5.300 _reflns_shell.pdbx_redundancy 7.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PZ9 _refine.ls_number_reflns_obs 7004 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.78 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.269 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 337 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 64.00 _refine.aniso_B[1][1] 1.43000 _refine.aniso_B[2][2] 1.43000 _refine.aniso_B[3][3] -2.14000 _refine.aniso_B[1][2] 0.71000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.742 _refine.pdbx_overall_ESU_R_Free 0.355 _refine.overall_SU_ML 0.281 _refine.overall_SU_B 32.030 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1391 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 1421 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 38.78 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1442 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.486 1.963 ? 1961 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.041 5.000 ? 177 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.669 22.353 ? 68 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.891 15.000 ? 228 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.628 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 217 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1096 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.251 0.200 ? 687 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.308 0.200 ? 988 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.145 0.200 ? 50 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.242 0.200 ? 51 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.193 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.874 1.500 ? 914 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.198 2.000 ? 1426 'X-RAY DIFFRACTION' ? r_scbond_it 1.724 3.000 ? 590 'X-RAY DIFFRACTION' ? r_scangle_it 2.790 4.500 ? 535 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.87 _refine_ls_shell.number_reflns_R_work 460 _refine_ls_shell.R_factor_R_work 0.271 _refine_ls_shell.percent_reflns_obs 96.41 _refine_ls_shell.R_factor_R_free 0.274 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PZ9 _struct.title 'Crystal structure of putative transcriptional regulator SCO4942 from Streptomyces coelicolor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PZ9 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;STRUCTURAL GENOMICS, TRANSCRIPTIONAL REGULATOR, STREPTOMYCES COELICOLOR A3(2), PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 31 ? ALA A 51 ? THR A 31 ALA A 51 1 ? 21 HELX_P HELX_P2 2 ARG A 52 ? ALA A 60 ? ARG A 52 ALA A 60 1 ? 9 HELX_P HELX_P3 3 SER A 63 ? PHE A 71 ? SER A 63 PHE A 71 1 ? 9 HELX_P HELX_P4 4 SER A 73 ? THR A 93 ? SER A 73 THR A 93 1 ? 21 HELX_P HELX_P5 5 ASP A 99 ? ARG A 114 ? ASP A 99 ARG A 114 1 ? 16 HELX_P HELX_P6 6 ARG A 114 ? LEU A 128 ? ARG A 114 LEU A 128 1 ? 15 HELX_P HELX_P7 7 PRO A 138 ? ILE A 156 ? PRO A 138 ILE A 156 1 ? 19 HELX_P HELX_P8 8 ASP A 164 ? MSE A 177 ? ASP A 164 MSE A 177 1 ? 14 HELX_P HELX_P9 9 MSE A 177 ? GLN A 182 ? MSE A 177 GLN A 182 1 ? 6 HELX_P HELX_P10 10 GLN A 182 ? ALA A 193 ? GLN A 182 ALA A 193 1 ? 12 HELX_P HELX_P11 11 SER A 197 ? PHE A 213 ? SER A 197 PHE A 213 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 176 C ? ? ? 1_555 A MSE 177 N ? ? A ALA 176 A MSE 177 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 177 C ? ? ? 1_555 A THR 178 N ? ? A MSE 177 A THR 178 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale3 covale both ? A HIS 211 C ? ? ? 1_555 A MSE 212 N ? ? A HIS 211 A MSE 212 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A MSE 212 C ? ? ? 1_555 A PHE 213 N ? ? A MSE 212 A PHE 213 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 227 ? 5 'BINDING SITE FOR RESIDUE SO4 A 227' AC2 Software A SO4 228 ? 3 'BINDING SITE FOR RESIDUE SO4 A 228' AC3 Software A SO4 229 ? 3 'BINDING SITE FOR RESIDUE SO4 A 229' AC4 Software A SO4 230 ? 4 'BINDING SITE FOR RESIDUE SO4 A 230' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 80 ? HIS A 80 . ? 4_545 ? 2 AC1 5 ARG A 84 ? ARG A 84 . ? 4_545 ? 3 AC1 5 SER A 197 ? SER A 197 . ? 1_555 ? 4 AC1 5 VAL A 198 ? VAL A 198 . ? 1_555 ? 5 AC1 5 THR A 199 ? THR A 199 . ? 1_555 ? 6 AC2 3 ARG A 32 ? ARG A 32 . ? 1_555 ? 7 AC2 3 GLN A 33 ? GLN A 33 . ? 1_555 ? 8 AC2 3 ARG A 84 ? ARG A 84 . ? 1_555 ? 9 AC3 3 THR A 31 ? THR A 31 . ? 1_555 ? 10 AC3 3 ARG A 66 ? ARG A 66 . ? 1_555 ? 11 AC3 3 TYR A 70 ? TYR A 70 . ? 1_555 ? 12 AC4 4 ARG A 52 ? ARG A 52 . ? 1_555 ? 13 AC4 4 VAL A 53 ? VAL A 53 . ? 1_555 ? 14 AC4 4 ASP A 54 ? ASP A 54 . ? 1_555 ? 15 AC4 4 LYS A 64 ? LYS A 64 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PZ9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PZ9 _atom_sites.fract_transf_matrix[1][1] 0.014934 _atom_sites.fract_transf_matrix[1][2] 0.008622 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017245 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009584 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 VAL 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 TYR 4 4 ? ? ? A . n A 1 5 PRO 5 5 ? ? ? A . n A 1 6 GLY 6 6 ? ? ? A . n A 1 7 PRO 7 7 ? ? ? A . n A 1 8 MSE 8 8 ? ? ? A . n A 1 9 PRO 9 9 ? ? ? A . n A 1 10 ARG 10 10 ? ? ? A . n A 1 11 SER 11 11 ? ? ? A . n A 1 12 PRO 12 12 ? ? ? A . n A 1 13 SER 13 13 ? ? ? A . n A 1 14 PRO 14 14 ? ? ? A . n A 1 15 GLY 15 15 ? ? ? A . n A 1 16 GLN 16 16 ? ? ? A . n A 1 17 THR 17 17 ? ? ? A . n A 1 18 PRO 18 18 ? ? ? A . n A 1 19 ASP 19 19 ? ? ? A . n A 1 20 ALA 20 20 ? ? ? A . n A 1 21 PRO 21 21 ? ? ? A . n A 1 22 THR 22 22 ? ? ? A . n A 1 23 SER 23 23 ? ? ? A . n A 1 24 GLY 24 24 ? ? ? A . n A 1 25 GLY 25 25 ? ? ? A . n A 1 26 GLY 26 26 ? ? ? A . n A 1 27 SER 27 27 ? ? ? A . n A 1 28 THR 28 28 ? ? ? A . n A 1 29 ASP 29 29 ? ? ? A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 HIS 110 110 110 HIS HIS A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 GLU 130 130 ? ? ? A . n A 1 131 SER 131 131 ? ? ? A . n A 1 132 ALA 132 132 ? ? ? A . n A 1 133 ASP 133 133 ? ? ? A . n A 1 134 ASN 134 134 ? ? ? A . n A 1 135 THR 135 135 ? ? ? A . n A 1 136 SER 136 136 ? ? ? A . n A 1 137 GLY 137 137 ? ? ? A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 GLN 140 140 140 GLN GLN A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 GLN 154 154 154 GLN GLN A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 PRO 161 161 161 PRO PRO A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 TRP 163 163 163 TRP TRP A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 GLN 174 174 174 GLN GLN A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 MSE 177 177 177 MSE MSE A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 TRP 179 179 179 TRP TRP A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 GLN 182 182 182 GLN GLN A . n A 1 183 PRO 183 183 183 PRO PRO A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 ASP 191 191 191 ASP ASP A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 PRO 196 196 196 PRO PRO A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 ARG 202 202 202 ARG ARG A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 THR 207 207 207 THR THR A . n A 1 208 ALA 208 208 208 ALA ALA A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 HIS 211 211 211 HIS HIS A . n A 1 212 MSE 212 212 212 MSE MSE A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 PRO 214 214 214 PRO PRO A . n A 1 215 ARG 215 215 215 ARG ARG A . n A 1 216 PRO 216 216 216 PRO PRO A . n A 1 217 ASP 217 217 ? ? ? A . n A 1 218 ARG 218 218 ? ? ? A . n A 1 219 ASP 219 219 ? ? ? A . n A 1 220 GLN 220 220 ? ? ? A . n A 1 221 ARG 221 221 ? ? ? A . n A 1 222 PRO 222 222 ? ? ? A . n A 1 223 ASN 223 223 ? ? ? A . n A 1 224 ARG 224 224 ? ? ? A . n A 1 225 LEU 225 225 ? ? ? A . n A 1 226 THR 226 226 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 227 1 SO4 SO4 A . C 2 SO4 1 228 2 SO4 SO4 A . D 2 SO4 1 229 3 SO4 SO4 A . E 2 SO4 1 230 4 SO4 SO4 A . F 3 HOH 1 231 5 HOH HOH A . F 3 HOH 2 232 6 HOH HOH A . F 3 HOH 3 233 7 HOH HOH A . F 3 HOH 4 234 8 HOH HOH A . F 3 HOH 5 235 9 HOH HOH A . F 3 HOH 6 236 10 HOH HOH A . F 3 HOH 7 237 11 HOH HOH A . F 3 HOH 8 238 12 HOH HOH A . F 3 HOH 9 239 13 HOH HOH A . F 3 HOH 10 240 14 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 177 A MSE 177 ? MET SELENOMETHIONINE 2 A MSE 212 A MSE 212 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5340 ? 1 MORE -121 ? 1 'SSA (A^2)' 17380 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.7816666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-19 2 'Structure model' 1 1 2007-11-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_citation_author.identifier_ORCID' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 48.4180 -2.9760 0.5140 0.1105 0.0318 0.2337 0.0735 0.1198 0.0538 7.7400 3.7612 10.8992 2.8340 -1.4120 -0.9968 -0.0850 -0.1608 -1.0588 -0.3971 -0.1733 -0.6178 0.5505 0.4201 0.2582 'X-RAY DIFFRACTION' 2 ? refined 22.2120 1.0330 8.7730 0.0943 0.0831 0.1334 0.0367 -0.0005 0.0130 1.9575 0.7252 1.3703 -0.0841 -0.3373 -0.0892 0.0578 0.3553 -0.0069 -0.1806 -0.1448 -0.0027 -0.0967 -0.0566 0.0869 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 30 A 72 ? A 30 A 72 'X-RAY DIFFRACTION' ? 2 2 A 73 A 216 ? A 73 A 216 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 HKL-2000 'data reduction' . ? 2 HKL-3000 phasing . ? 3 MLPHARE phasing . ? 4 DM 'model building' . ? 5 SHELXD phasing . ? 6 O 'model building' . ? 7 SOLVE phasing . ? 8 SHELXE 'model building' . ? 9 RESOLVE 'model building' . ? 10 Coot 'model building' . ? 11 CCP4 'model building' . ? 12 REFMAC refinement 5.2.0005 ? 13 ADSC 'data collection' Quantum ? 14 HKL-2000 'data scaling' . ? 15 DM phasing . ? 16 RESOLVE phasing . ? 17 CCP4 phasing . ? 18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 54 ? ? -36.89 -70.27 2 1 GLN A 94 ? ? -38.50 118.77 3 1 ARG A 114 ? ? -113.44 75.36 4 1 LEU A 128 ? ? -99.23 -68.53 5 1 ASP A 160 ? ? -37.48 122.57 6 1 ALA A 190 ? ? -31.56 -77.86 7 1 SER A 197 ? ? -36.08 118.30 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id ALA _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 129 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CB _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id ALA _pdbx_unobs_or_zero_occ_atoms.label_seq_id 129 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CB # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A VAL 2 ? A VAL 2 3 1 Y 1 A ALA 3 ? A ALA 3 4 1 Y 1 A TYR 4 ? A TYR 4 5 1 Y 1 A PRO 5 ? A PRO 5 6 1 Y 1 A GLY 6 ? A GLY 6 7 1 Y 1 A PRO 7 ? A PRO 7 8 1 Y 1 A MSE 8 ? A MSE 8 9 1 Y 1 A PRO 9 ? A PRO 9 10 1 Y 1 A ARG 10 ? A ARG 10 11 1 Y 1 A SER 11 ? A SER 11 12 1 Y 1 A PRO 12 ? A PRO 12 13 1 Y 1 A SER 13 ? A SER 13 14 1 Y 1 A PRO 14 ? A PRO 14 15 1 Y 1 A GLY 15 ? A GLY 15 16 1 Y 1 A GLN 16 ? A GLN 16 17 1 Y 1 A THR 17 ? A THR 17 18 1 Y 1 A PRO 18 ? A PRO 18 19 1 Y 1 A ASP 19 ? A ASP 19 20 1 Y 1 A ALA 20 ? A ALA 20 21 1 Y 1 A PRO 21 ? A PRO 21 22 1 Y 1 A THR 22 ? A THR 22 23 1 Y 1 A SER 23 ? A SER 23 24 1 Y 1 A GLY 24 ? A GLY 24 25 1 Y 1 A GLY 25 ? A GLY 25 26 1 Y 1 A GLY 26 ? A GLY 26 27 1 Y 1 A SER 27 ? A SER 27 28 1 Y 1 A THR 28 ? A THR 28 29 1 Y 1 A ASP 29 ? A ASP 29 30 1 Y 1 A GLU 130 ? A GLU 130 31 1 Y 1 A SER 131 ? A SER 131 32 1 Y 1 A ALA 132 ? A ALA 132 33 1 Y 1 A ASP 133 ? A ASP 133 34 1 Y 1 A ASN 134 ? A ASN 134 35 1 Y 1 A THR 135 ? A THR 135 36 1 Y 1 A SER 136 ? A SER 136 37 1 Y 1 A GLY 137 ? A GLY 137 38 1 Y 1 A ASP 217 ? A ASP 217 39 1 Y 1 A ARG 218 ? A ARG 218 40 1 Y 1 A ASP 219 ? A ASP 219 41 1 Y 1 A GLN 220 ? A GLN 220 42 1 Y 1 A ARG 221 ? A ARG 221 43 1 Y 1 A PRO 222 ? A PRO 222 44 1 Y 1 A ASN 223 ? A ASN 223 45 1 Y 1 A ARG 224 ? A ARG 224 46 1 Y 1 A LEU 225 ? A LEU 225 47 1 Y 1 A THR 226 ? A THR 226 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #