HEADER SUGAR BINDING PROTEIN 18-MAY-07 2PZJ TITLE CRYSTAL STRUCTURE OF THE BORDETELLA BRONCHISEPTICA ENZYME WBMF IN TITLE 2 COMPLEX WITH NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NUCLEOTIDE SUGAR EPIMERASE/ DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA BRONCHISEPTICA; SOURCE 3 ORGANISM_TAXID: 518; SOURCE 4 GENE: BBLPS1.16, WBMF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BORDETELLA BRONCHISEPTICA, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, O KEYWDS 2 ANTIGEN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.J.HARMER,J.D.KING,C.M.PALMER,D.MASKELL,T.L.BLUNDELL REVDAT 5 30-AUG-23 2PZJ 1 REMARK SEQADV REVDAT 4 13-JUL-11 2PZJ 1 VERSN REVDAT 3 24-FEB-09 2PZJ 1 VERSN REVDAT 2 11-DEC-07 2PZJ 1 JRNL REVDAT 1 02-OCT-07 2PZJ 0 JRNL AUTH J.D.KING,N.J.HARMER,A.PRESTON,C.M.PALMER,M.REJZEK,R.A.FIELD, JRNL AUTH 2 T.L.BLUNDELL,D.J.MASKELL JRNL TITL PREDICTING PROTEIN FUNCTION FROM STRUCTURE--THE ROLES OF JRNL TITL 2 SHORT-CHAIN DEHYDROGENASE/REDUCTASE ENZYMES IN BORDETELLA JRNL TITL 3 O-ANTIGEN BIOSYNTHESIS. JRNL REF J.MOL.BIOL. V. 374 749 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17950751 JRNL DOI 10.1016/J.JMB.2007.09.055 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.J.HARMER,J.D.KING,C.M.PALMER,A.PRESTON,D.J.MASKELL, REMARK 1 AUTH 2 T.L.BLUNDELL REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF THE SHORT-CHAIN DEHYDROGENASE REMARK 1 TITL 3 ENZYMES WBMF, WBMG AND WBMH FROM BORDETELLA BRONCHISEPTICA. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 711 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17671375 REMARK 1 DOI 10.1107/S174430910703477X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 25919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.73000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.517 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2644 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1717 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3610 ; 1.458 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4202 ; 1.003 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 6.084 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;39.072 ;24.196 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;14.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.746 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2944 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 518 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 519 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1792 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1281 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1287 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 181 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.087 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1784 ; 0.651 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 674 ; 0.176 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2653 ; 0.913 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 1.629 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 953 ; 2.324 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4906 18.5212 -4.8893 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1429 REMARK 3 T33: -0.1064 T12: -0.1126 REMARK 3 T13: 0.0010 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 4.2969 L22: 60.4337 REMARK 3 L33: 6.7428 L12: 0.8056 REMARK 3 L13: 1.2869 L23: 19.8178 REMARK 3 S TENSOR REMARK 3 S11: -0.6095 S12: 0.8341 S13: 0.4982 REMARK 3 S21: -1.9538 S22: 0.5740 S23: -0.0337 REMARK 3 S31: -0.8276 S32: -0.4206 S33: 0.0354 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3890 13.3040 2.7836 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: -0.0403 REMARK 3 T33: -0.1650 T12: -0.1484 REMARK 3 T13: -0.0154 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 4.1445 L22: 1.3087 REMARK 3 L33: 3.9718 L12: -0.2956 REMARK 3 L13: -0.8189 L23: 1.1569 REMARK 3 S TENSOR REMARK 3 S11: -0.1497 S12: 0.6341 S13: -0.1106 REMARK 3 S21: -0.4253 S22: 0.0651 S23: 0.1086 REMARK 3 S31: 0.2452 S32: -0.4280 S33: 0.0845 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7289 5.0111 10.6749 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: -0.0940 REMARK 3 T33: -0.0763 T12: -0.1725 REMARK 3 T13: 0.0164 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 4.4813 L22: 1.7408 REMARK 3 L33: 1.4952 L12: 1.8351 REMARK 3 L13: -1.3118 L23: 0.5112 REMARK 3 S TENSOR REMARK 3 S11: -0.3274 S12: 0.4311 S13: -0.2587 REMARK 3 S21: -0.4627 S22: 0.1696 S23: 0.1400 REMARK 3 S31: 0.6426 S32: -0.4936 S33: 0.1578 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5682 8.2876 15.0263 REMARK 3 T TENSOR REMARK 3 T11: -0.0139 T22: -0.1725 REMARK 3 T33: -0.1373 T12: -0.0841 REMARK 3 T13: 0.0356 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.5998 L22: 0.8462 REMARK 3 L33: 3.5093 L12: 0.3162 REMARK 3 L13: -1.6704 L23: -0.4705 REMARK 3 S TENSOR REMARK 3 S11: -0.2082 S12: 0.2293 S13: -0.2896 REMARK 3 S21: -0.2716 S22: 0.0873 S23: 0.0463 REMARK 3 S31: 0.5651 S32: -0.2480 S33: 0.1209 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3584 18.2763 9.6728 REMARK 3 T TENSOR REMARK 3 T11: -0.1247 T22: -0.1381 REMARK 3 T33: -0.1856 T12: -0.0827 REMARK 3 T13: 0.0113 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.2382 L22: 3.0492 REMARK 3 L33: 6.0230 L12: 0.9162 REMARK 3 L13: -0.9176 L23: -0.1779 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: 0.1023 S13: 0.1889 REMARK 3 S21: -0.2117 S22: 0.0985 S23: -0.1820 REMARK 3 S31: 0.0761 S32: 0.2757 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3382 29.6752 28.3461 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: -0.0049 REMARK 3 T33: 0.0919 T12: 0.0184 REMARK 3 T13: -0.0340 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 9.8750 L22: 7.8262 REMARK 3 L33: 44.0876 L12: 4.7283 REMARK 3 L13: -20.8457 L23: -9.3010 REMARK 3 S TENSOR REMARK 3 S11: -0.1812 S12: 0.9136 S13: 0.0811 REMARK 3 S21: 0.0705 S22: 0.2963 S23: 0.7019 REMARK 3 S31: -0.1923 S32: -1.1579 S33: -0.1152 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0349 21.0899 19.5757 REMARK 3 T TENSOR REMARK 3 T11: -0.1600 T22: -0.2310 REMARK 3 T33: -0.1808 T12: -0.0287 REMARK 3 T13: 0.0147 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.0487 L22: 1.6989 REMARK 3 L33: 4.0528 L12: 0.8276 REMARK 3 L13: -0.4172 L23: -0.7509 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: -0.0096 S13: 0.2142 REMARK 3 S21: -0.0539 S22: 0.0673 S23: 0.0573 REMARK 3 S31: -0.0339 S32: -0.0365 S33: -0.0030 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0481 14.4256 17.9512 REMARK 3 T TENSOR REMARK 3 T11: -0.1376 T22: 0.0508 REMARK 3 T33: -0.0522 T12: -0.1259 REMARK 3 T13: -0.0454 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.1222 L22: 2.1142 REMARK 3 L33: 2.8311 L12: -0.2093 REMARK 3 L13: -0.2039 L23: -1.2381 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.0079 S13: -0.0444 REMARK 3 S21: 0.0009 S22: -0.0121 S23: 0.3740 REMARK 3 S31: 0.1096 S32: -0.3947 S33: 0.0585 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8556 18.4906 18.8366 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.3409 REMARK 3 T33: 0.2959 T12: -0.1845 REMARK 3 T13: -0.0088 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 7.6050 L22: 17.8467 REMARK 3 L33: 20.6058 L12: 5.3906 REMARK 3 L13: 7.4812 L23: 18.9333 REMARK 3 S TENSOR REMARK 3 S11: 0.4310 S12: -0.6019 S13: -0.5197 REMARK 3 S21: 1.9216 S22: -0.2500 S23: 0.9543 REMARK 3 S31: 1.0478 S32: -1.1832 S33: -0.1809 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3436 30.0105 23.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.1415 REMARK 3 T33: 0.1256 T12: -0.0147 REMARK 3 T13: 0.0223 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 32.1584 L22: 5.6480 REMARK 3 L33: 16.3789 L12: 2.3959 REMARK 3 L13: -17.3714 L23: 0.7107 REMARK 3 S TENSOR REMARK 3 S11: -0.6079 S12: -0.9469 S13: -0.9695 REMARK 3 S21: 0.6931 S22: -0.1945 S23: 0.2048 REMARK 3 S31: 1.0423 S32: 0.0718 S33: 0.8025 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 239 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6421 25.2698 9.2441 REMARK 3 T TENSOR REMARK 3 T11: -0.1387 T22: 0.0539 REMARK 3 T33: -0.0552 T12: -0.0465 REMARK 3 T13: -0.0941 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 7.6935 L22: 4.9436 REMARK 3 L33: 2.7430 L12: -1.9896 REMARK 3 L13: -1.6267 L23: -2.8390 REMARK 3 S TENSOR REMARK 3 S11: 0.1781 S12: 0.2958 S13: 0.3436 REMARK 3 S21: -0.6104 S22: -0.0334 S23: 0.2827 REMARK 3 S31: -0.3977 S32: -0.7455 S33: -0.1447 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4890 26.2451 7.2802 REMARK 3 T TENSOR REMARK 3 T11: -0.0957 T22: -0.1095 REMARK 3 T33: -0.1322 T12: -0.0612 REMARK 3 T13: -0.0228 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 3.3583 L22: 2.0429 REMARK 3 L33: 2.3555 L12: -0.2726 REMARK 3 L13: 0.8220 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: 0.4559 S13: 0.3293 REMARK 3 S21: -0.2484 S22: 0.1036 S23: 0.0978 REMARK 3 S31: -0.1598 S32: -0.1516 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3875 33.4978 15.2083 REMARK 3 T TENSOR REMARK 3 T11: -0.0128 T22: 0.0534 REMARK 3 T33: 0.1527 T12: 0.0092 REMARK 3 T13: -0.0552 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 41.8719 L22: 29.7864 REMARK 3 L33: 28.6802 L12: 32.6832 REMARK 3 L13: -34.2605 L23: -27.8827 REMARK 3 S TENSOR REMARK 3 S11: 0.5178 S12: -0.0927 S13: 0.4509 REMARK 3 S21: 0.4785 S22: -0.6803 S23: -0.3701 REMARK 3 S31: -0.9257 S32: -0.1840 S33: 0.1625 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 274 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5591 26.9040 12.2937 REMARK 3 T TENSOR REMARK 3 T11: -0.0414 T22: 0.2349 REMARK 3 T33: 0.1924 T12: -0.0752 REMARK 3 T13: -0.0991 T23: 0.0750 REMARK 3 L TENSOR REMARK 3 L11: 5.8076 L22: 5.0710 REMARK 3 L33: 4.8000 L12: 0.1039 REMARK 3 L13: -1.5297 L23: 4.6938 REMARK 3 S TENSOR REMARK 3 S11: 0.2598 S12: 0.2600 S13: 0.4233 REMARK 3 S21: 0.0366 S22: -0.1645 S23: 0.5847 REMARK 3 S31: -0.0420 S32: -0.7721 S33: -0.0953 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5711 28.5949 19.1299 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.2946 REMARK 3 T33: 0.3433 T12: -0.0512 REMARK 3 T13: -0.0125 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 37.3444 L22: 49.5632 REMARK 3 L33: 11.5139 L12: 15.2122 REMARK 3 L13: 11.4071 L23: 23.3071 REMARK 3 S TENSOR REMARK 3 S11: -0.1710 S12: 0.6276 S13: 0.8434 REMARK 3 S21: -1.0692 S22: -0.0091 S23: 1.1486 REMARK 3 S31: -0.7318 S32: -0.7673 S33: 0.1801 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7410 39.5544 27.0045 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: -0.0794 REMARK 3 T33: 0.0198 T12: 0.1017 REMARK 3 T13: 0.0697 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 4.5476 L22: 15.0742 REMARK 3 L33: 16.7479 L12: 2.2784 REMARK 3 L13: 4.9822 L23: 10.4208 REMARK 3 S TENSOR REMARK 3 S11: -0.1042 S12: 0.2055 S13: -0.7558 REMARK 3 S21: 0.4220 S22: 0.1492 S23: 0.1923 REMARK 3 S31: -0.1114 S32: -0.0446 S33: -0.0450 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9809 35.9264 10.5824 REMARK 3 T TENSOR REMARK 3 T11: 0.0784 T22: 0.0140 REMARK 3 T33: 0.0163 T12: -0.0058 REMARK 3 T13: -0.1268 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 9.3470 L22: 5.2894 REMARK 3 L33: 6.0493 L12: -3.3256 REMARK 3 L13: -7.0973 L23: 0.8787 REMARK 3 S TENSOR REMARK 3 S11: -0.3042 S12: 0.0436 S13: 0.7490 REMARK 3 S21: 0.0304 S22: -0.0296 S23: 0.2259 REMARK 3 S31: -0.6985 S32: -0.7194 S33: 0.3338 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9818 30.9656 4.6173 REMARK 3 T TENSOR REMARK 3 T11: 0.0120 T22: 0.0131 REMARK 3 T33: 0.0152 T12: -0.0428 REMARK 3 T13: -0.0893 T23: 0.1008 REMARK 3 L TENSOR REMARK 3 L11: 22.8240 L22: 4.0510 REMARK 3 L33: 3.2412 L12: 6.7182 REMARK 3 L13: -3.9397 L23: -2.1598 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.7322 S13: 1.5724 REMARK 3 S21: -0.1762 S22: 0.1141 S23: 0.4923 REMARK 3 S31: -0.2707 S32: -0.2760 S33: -0.1760 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 328 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9086 10.2081 11.4504 REMARK 3 T TENSOR REMARK 3 T11: -0.0912 T22: 0.1513 REMARK 3 T33: 0.0591 T12: -0.1656 REMARK 3 T13: -0.0740 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 3.3073 L22: 5.4704 REMARK 3 L33: 9.7931 L12: -0.8461 REMARK 3 L13: 1.2266 L23: -5.1300 REMARK 3 S TENSOR REMARK 3 S11: -0.1204 S12: 0.2588 S13: -0.4019 REMARK 3 S21: -0.2716 S22: 0.1512 S23: 0.3863 REMARK 3 S31: 0.4201 S32: -0.8426 S33: -0.0308 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 351 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1061 6.3246 30.6155 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.3530 REMARK 3 T33: 0.2904 T12: -0.2078 REMARK 3 T13: 0.0840 T23: 0.1864 REMARK 3 L TENSOR REMARK 3 L11: 12.3276 L22: 27.7916 REMARK 3 L33: 6.6651 L12: 11.3390 REMARK 3 L13: -8.6083 L23: -4.5486 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.6669 S13: -0.6110 REMARK 3 S21: 2.0001 S22: -0.1607 S23: 1.1757 REMARK 3 S31: 0.1298 S32: -1.4904 S33: 0.1000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27275 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.22300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1BXK, 1KEU, 1R6D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, 16 % (W/W) PEG 8000, PH REMARK 280 9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.44200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.93750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.44200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.93750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE (DIMERIC) BIOLOGICAL ASSEMBLY IS REMARK 300 GENERATED BY THE TWO FOLD AXIS: 0, Y, 0, FOLLOWED BY A TRANSLATION REMARK 300 OF 0, 0, 1. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.41511 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 56.27272 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 384 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 MET A 5 REMARK 465 ASN A 6 REMARK 465 ALA A 7 REMARK 465 CYS A 133 REMARK 465 SER A 134 REMARK 465 ILE A 135 REMARK 465 ALA A 136 REMARK 465 GLU A 137 REMARK 465 LYS A 138 REMARK 465 THR A 139 REMARK 465 PHE A 140 REMARK 465 ASP A 141 REMARK 465 ASP A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 ALA A 145 REMARK 465 THR A 146 REMARK 465 GLY A 302 REMARK 465 LYS A 303 REMARK 465 ARG A 304 REMARK 465 PHE A 305 REMARK 465 GLY A 356 REMARK 465 LYS A 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CD CE NZ REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 LYS A 177 CE NZ REMARK 470 GLN A 189 CD OE1 NE2 REMARK 470 ARG A 202 CZ NH1 NH2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 GLU A 282 CD OE1 OE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 ASP A 291 CG OD1 OD2 REMARK 470 LYS A 295 CD CE NZ REMARK 470 ARG A 328 CD NE CZ NH1 NH2 REMARK 470 GLU A 332 CD OE1 OE2 REMARK 470 LYS A 335 CE NZ REMARK 470 GLN A 343 CD OE1 NE2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 239 O HOH A 525 1.99 REMARK 500 OD1 ASN A 190 O HOH A 525 2.00 REMARK 500 OD1 ASP A 239 OG SER A 267 2.08 REMARK 500 OD1 ASP A 239 O HOH A 528 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 270 CD GLU A 270 OE2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 38.19 -78.02 REMARK 500 ASN A 106 -34.02 -140.77 REMARK 500 GLU A 148 122.20 -39.34 REMARK 500 ASN A 156 -115.55 -48.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 156 ASN A 157 144.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 358 DBREF 2PZJ A 1 357 UNP O87989 O87989_BORBR 1 357 SEQADV 2PZJ MET A -19 UNP O87989 EXPRESSION TAG SEQADV 2PZJ GLY A -18 UNP O87989 EXPRESSION TAG SEQADV 2PZJ SER A -17 UNP O87989 EXPRESSION TAG SEQADV 2PZJ SER A -16 UNP O87989 EXPRESSION TAG SEQADV 2PZJ HIS A -15 UNP O87989 EXPRESSION TAG SEQADV 2PZJ HIS A -14 UNP O87989 EXPRESSION TAG SEQADV 2PZJ HIS A -13 UNP O87989 EXPRESSION TAG SEQADV 2PZJ HIS A -12 UNP O87989 EXPRESSION TAG SEQADV 2PZJ HIS A -11 UNP O87989 EXPRESSION TAG SEQADV 2PZJ HIS A -10 UNP O87989 EXPRESSION TAG SEQADV 2PZJ SER A -9 UNP O87989 EXPRESSION TAG SEQADV 2PZJ SER A -8 UNP O87989 EXPRESSION TAG SEQADV 2PZJ GLY A -7 UNP O87989 EXPRESSION TAG SEQADV 2PZJ LEU A -6 UNP O87989 EXPRESSION TAG SEQADV 2PZJ VAL A -5 UNP O87989 EXPRESSION TAG SEQADV 2PZJ PRO A -4 UNP O87989 EXPRESSION TAG SEQADV 2PZJ ARG A -3 UNP O87989 EXPRESSION TAG SEQADV 2PZJ GLY A -2 UNP O87989 EXPRESSION TAG SEQADV 2PZJ SER A -1 UNP O87989 EXPRESSION TAG SEQADV 2PZJ HIS A 0 UNP O87989 EXPRESSION TAG SEQRES 1 A 377 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 377 LEU VAL PRO ARG GLY SER HIS MET PRO VAL ILE MET ASN SEQRES 3 A 377 ALA SER LYS LEU ALA ASN THR ASN VAL MET VAL VAL GLY SEQRES 4 A 377 GLY ALA GLY PHE VAL GLY SER ASN LEU VAL LYS ARG LEU SEQRES 5 A 377 LEU GLU LEU GLY VAL ASN GLN VAL HIS VAL VAL ASP ASN SEQRES 6 A 377 LEU LEU SER ALA GLU LYS ILE ASN VAL PRO ASP HIS PRO SEQRES 7 A 377 ALA VAL ARG PHE SER GLU THR SER ILE THR ASP ASP ALA SEQRES 8 A 377 LEU LEU ALA SER LEU GLN ASP GLU TYR ASP TYR VAL PHE SEQRES 9 A 377 HIS LEU ALA THR TYR HIS GLY ASN GLN SER SER ILE HIS SEQRES 10 A 377 ASP PRO LEU ALA ASP HIS GLU ASN ASN THR LEU THR THR SEQRES 11 A 377 LEU LYS LEU TYR GLU ARG LEU LYS HIS PHE LYS ARG LEU SEQRES 12 A 377 LYS LYS VAL VAL TYR SER ALA ALA GLY CYS SER ILE ALA SEQRES 13 A 377 GLU LYS THR PHE ASP ASP ALA LYS ALA THR GLU GLU THR SEQRES 14 A 377 ASP ILE VAL SER LEU HIS ASN ASN ASP SER PRO TYR SER SEQRES 15 A 377 MET SER LYS ILE PHE GLY GLU PHE TYR SER VAL TYR TYR SEQRES 16 A 377 HIS LYS GLN HIS GLN LEU PRO THR VAL ARG ALA ARG PHE SEQRES 17 A 377 GLN ASN VAL TYR GLY PRO GLY GLU ILE LEU GLY ALA GLY SEQRES 18 A 377 ARG TRP ARG GLY THR PRO ALA THR VAL TRP ARG ASN VAL SEQRES 19 A 377 THR PRO THR PHE ILE TYR LYS ALA LEU LYS GLY MET PRO SEQRES 20 A 377 LEU PRO LEU GLU ASN GLY GLY VAL ALA THR ARG ASP PHE SEQRES 21 A 377 ILE PHE VAL GLU ASP VAL ALA ASN GLY LEU ILE ALA CYS SEQRES 22 A 377 ALA ALA ASP GLY THR PRO GLY GLY VAL TYR ASN ILE ALA SEQRES 23 A 377 SER GLY LYS GLU THR SER ILE ALA ASP LEU ALA THR LYS SEQRES 24 A 377 ILE ASN GLU ILE THR GLY ASN ASN THR GLU LEU ASP ARG SEQRES 25 A 377 LEU PRO LYS ARG PRO TRP ASP ASN SER GLY LYS ARG PHE SEQRES 26 A 377 GLY SER PRO GLU LYS ALA ARG ARG GLU LEU GLY PHE SER SEQRES 27 A 377 ALA ASP VAL SER ILE ASP ASP GLY LEU ARG LYS THR ILE SEQRES 28 A 377 GLU TRP THR LYS ALA ASN LEU ALA VAL ILE GLU GLN ILE SEQRES 29 A 377 MET ARG LYS HIS ASP SER ALA LEU ALA THR TYR GLY LYS HET NAD A 358 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 HOH *192(H2 O) HELIX 1 1 GLY A 22 LEU A 35 1 14 HELIX 2 2 GLU A 50 VAL A 54 5 5 HELIX 3 3 ASP A 69 LEU A 76 1 8 HELIX 4 4 GLY A 91 ASP A 98 1 8 HELIX 5 5 ASP A 98 THR A 107 1 10 HELIX 6 6 THR A 107 LYS A 118 1 12 HELIX 7 7 SER A 159 GLN A 180 1 22 HELIX 8 8 THR A 206 VAL A 210 5 5 HELIX 9 9 ASN A 213 LYS A 224 1 12 HELIX 10 10 GLU A 231 VAL A 235 5 5 HELIX 11 11 VAL A 243 GLY A 257 1 15 HELIX 12 12 ILE A 273 GLY A 285 1 13 HELIX 13 13 PRO A 308 GLY A 316 1 9 HELIX 14 14 SER A 322 ASN A 337 1 16 HELIX 15 15 ASN A 337 LYS A 347 1 11 HELIX 16 16 HIS A 348 THR A 354 1 7 SHEET 1 A 7 VAL A 60 SER A 63 0 SHEET 2 A 7 GLN A 39 VAL A 43 1 N VAL A 42 O SER A 63 SHEET 3 A 7 ASN A 14 VAL A 18 1 N VAL A 15 O HIS A 41 SHEET 4 A 7 TYR A 82 HIS A 85 1 O PHE A 84 N MET A 16 SHEET 5 A 7 LYS A 125 ALA A 131 1 O VAL A 127 N VAL A 83 SHEET 6 A 7 THR A 183 PHE A 188 1 O ALA A 186 N ALA A 130 SHEET 7 A 7 GLY A 261 ASN A 264 1 O GLY A 261 N ARG A 185 SHEET 1 B 2 VAL A 191 TYR A 192 0 SHEET 2 B 2 ILE A 241 PHE A 242 1 O ILE A 241 N TYR A 192 SHEET 1 C 2 THR A 237 ARG A 238 0 SHEET 2 C 2 THR A 271 SER A 272 -1 O THR A 271 N ARG A 238 CISPEP 1 HIS A 90 GLY A 91 0 -8.94 SITE 1 AC1 33 GLY A 19 GLY A 22 PHE A 23 VAL A 24 SITE 2 AC1 33 ASP A 44 ASN A 45 LEU A 46 LEU A 47 SITE 3 AC1 33 SER A 48 ALA A 49 SER A 66 ILE A 67 SITE 4 AC1 33 LEU A 86 ALA A 87 THR A 88 HIS A 90 SITE 5 AC1 33 ASN A 105 THR A 109 SER A 129 ALA A 130 SITE 6 AC1 33 TYR A 161 LYS A 165 PHE A 188 GLN A 189 SITE 7 AC1 33 ASN A 190 VAL A 191 ARG A 212 HOH A 363 SITE 8 AC1 33 HOH A 365 HOH A 372 HOH A 395 HOH A 398 SITE 9 AC1 33 HOH A 399 CRYST1 82.884 77.875 59.226 90.00 108.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012065 0.000000 0.003960 0.00000 SCALE2 0.000000 0.012841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017771 0.00000