HEADER TRANSFERASE 22-MAY-07 2Q0Y TITLE CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE (YP_295895.1) TITLE 2 FROM RALSTONIA EUTROPHA JMP134 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA JMP134; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 GENE: YP_295895.1, REUT_A1686; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_295895.1, ACETYLTRANSFERASE (GNAT) FAMILY, GCN5-RELATED N- KEYWDS 2 ACETYLTRANSFERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2Q0Y 1 REMARK SEQADV LINK REVDAT 6 24-JUL-19 2Q0Y 1 REMARK LINK REVDAT 5 25-OCT-17 2Q0Y 1 REMARK REVDAT 4 18-OCT-17 2Q0Y 1 REMARK REVDAT 3 13-JUL-11 2Q0Y 1 VERSN REVDAT 2 24-FEB-09 2Q0Y 1 VERSN REVDAT 1 05-JUN-07 2Q0Y 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE JRNL TITL 2 (YP_295895.1) FROM RALSTONIA EUTROPHA JMP134 AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 21936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1269 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1165 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1723 ; 1.344 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2701 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 5.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;30.257 ;22.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 204 ;11.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 178 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1434 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 266 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 253 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1116 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 603 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 700 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.237 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 81 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.046 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 828 ; 1.953 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 322 ; 0.420 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1252 ; 2.482 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 525 ; 4.491 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 464 ; 6.332 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4339 13.0085 6.5720 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: -0.0091 REMARK 3 T33: 0.0097 T12: 0.0091 REMARK 3 T13: 0.0033 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.3294 L22: 1.4445 REMARK 3 L33: 0.9816 L12: 0.1502 REMARK 3 L13: 0.0914 L23: 0.1624 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0439 S13: 0.0555 REMARK 3 S21: 0.0062 S22: 0.0104 S23: 0.0755 REMARK 3 S31: -0.1129 S32: -0.0677 S33: -0.0092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. MAGNESIUM IONS, ETHYLENE GLYCOL, AND FORMIC ACID REMARK 3 MOLECULES FROM THE CRYSTALLIZATION AND CRYO SOLUTION ARE REMARK 3 MODELED INTO THE STRUCTURE. REMARK 3 5. X-RAY FLUORESCENCE AND ANOMALOUS DIFFERENCE MAPS SUPPORT REMARK 3 THE ASSIGNMENT OF A ZINC ATOM IN THE STRUCTURE. REMARK 3 6. AN UNKNOWN LIGAND (UNL) WAS MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 2Q0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000043011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.591 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.610 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M MG FORMATE, 20.0% PEG REMARK 280 3350, NO BUFFER PH 5.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.45333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.22667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.22667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.45333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORT THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY-SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 13.22667 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CE REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLU A 12 CD OE1 OE2 REMARK 470 ARG A 16 NH1 NH2 REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 80 65.29 -159.85 REMARK 500 ASP A 84 44.08 -97.65 REMARK 500 ILE A 150 -83.63 -108.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 155 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 ASP A 9 OD2 103.8 REMARK 620 3 FMT A 159 O1 104.0 123.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 59 OE1 REMARK 620 2 GLU A 59 OE2 52.0 REMARK 620 3 GLU A 59 OE2 25.1 28.4 REMARK 620 4 HIS A 98 NE2 95.5 147.4 119.4 REMARK 620 5 GLU A 114 OE1 108.0 84.3 103.3 110.4 REMARK 620 6 GLU A 117 OE1 124.6 84.5 102.3 120.2 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 154 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 NE2 REMARK 620 2 GLU A 145 OE2 105.7 REMARK 620 3 GLU A 145 OE1 61.3 47.8 REMARK 620 4 GLU A 145 OE2 112.2 100.5 100.6 REMARK 620 5 HOH A 364 O 90.9 75.4 93.4 156.7 REMARK 620 6 HOH A 365 O 131.8 100.7 144.4 101.5 57.9 REMARK 620 7 HOH A 365 O 153.8 84.3 132.0 89.0 67.8 22.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 161 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 371710 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH REMARK 999 TEV PROTEASE, LEAVING ONLY A GLYCINE, FOLLOWED BY REMARK 999 THE TARGET SEQUENCE. DBREF 2Q0Y A 1 152 UNP Q470Y2 Q470Y2_RALEJ 1 152 SEQADV 2Q0Y GLY A 0 UNP Q470Y2 EXPRESSION TAG SEQADV 2Q0Y MSE A 1 UNP Q470Y2 MET 1 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 21 UNP Q470Y2 MET 21 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 35 UNP Q470Y2 MET 35 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 57 UNP Q470Y2 MET 57 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 70 UNP Q470Y2 MET 70 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 108 UNP Q470Y2 MET 108 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 130 UNP Q470Y2 MET 130 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 138 UNP Q470Y2 MET 138 MODIFIED RESIDUE SEQADV 2Q0Y MSE A 146 UNP Q470Y2 MET 146 MODIFIED RESIDUE SEQRES 1 A 153 GLY MSE GLU CYS ARG PRO LEU CYS ILE ASP ASP LEU GLU SEQRES 2 A 153 LEU VAL CYS ARG HIS ARG GLU ALA MSE PHE ARG GLU ALA SEQRES 3 A 153 GLY ARG ASP ALA LEU THR LEU ALA ALA MSE GLN ASP PRO SEQRES 4 A 153 PHE ARG ASP TRP LEU LEU PRO ARG LEU ALA ASP GLY SER SEQRES 5 A 153 TYR PHE GLY TRP VAL MSE GLU GLU GLY GLY ALA PRO LEU SEQRES 6 A 153 ALA GLY ILE GLY LEU MSE VAL ILE GLU TRP PRO PRO HIS SEQRES 7 A 153 PRO SER HIS PRO LEU GLN ASP LYS ARG GLY TYR ILE LEU SEQRES 8 A 153 ASN LEU TYR VAL ASP PRO SER HIS ARG GLU ARG GLY ILE SEQRES 9 A 153 GLY GLN ALA LEU MSE ASN ARG ALA GLU ALA GLU PHE ALA SEQRES 10 A 153 GLU ARG GLY ILE ALA PHE ALA VAL LEU HIS ALA THR GLU SEQRES 11 A 153 MSE GLY GLN PRO LEU TYR ALA ARG MSE GLY TRP SER PRO SEQRES 12 A 153 THR THR GLU MSE SER LYS PRO ILE ALA GLY MODRES 2Q0Y MSE A 1 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 21 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 35 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 57 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 70 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 108 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 130 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 138 MET SELENOMETHIONINE MODRES 2Q0Y MSE A 146 MET SELENOMETHIONINE HET MSE A 1 11 HET MSE A 21 8 HET MSE A 35 8 HET MSE A 57 8 HET MSE A 70 8 HET MSE A 108 8 HET MSE A 130 8 HET MSE A 138 8 HET MSE A 146 8 HET ZN A 153 1 HET MG A 154 1 HET MG A 155 1 HET UNL A 156 4 HET EDO A 157 4 HET FMT A 158 3 HET FMT A 159 3 HET FMT A 160 3 HET FMT A 161 3 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM UNL UNKNOWN LIGAND HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 MG 2(MG 2+) FORMUL 6 EDO C2 H6 O2 FORMUL 7 FMT 4(C H2 O2) FORMUL 11 HOH *206(H2 O) HELIX 1 1 CYS A 7 ASP A 9 5 3 HELIX 2 2 ASP A 10 ALA A 25 1 16 HELIX 3 3 ASP A 28 ASP A 49 1 22 HELIX 4 4 PRO A 96 ARG A 99 5 4 HELIX 5 5 GLY A 102 ARG A 118 1 17 HELIX 6 6 GLY A 131 MSE A 138 1 8 SHEET 1 A 5 MSE A 1 PRO A 5 0 SHEET 2 A 5 PHE A 53 GLU A 59 -1 O GLU A 58 N GLU A 2 SHEET 3 A 5 ALA A 62 GLU A 73 -1 O LEU A 64 N MSE A 57 SHEET 4 A 5 LYS A 85 VAL A 94 -1 O ARG A 86 N ILE A 72 SHEET 5 A 5 ALA A 123 LEU A 125 1 O VAL A 124 N GLY A 87 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLU A 2 1555 1555 1.32 LINK C ALA A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N PHE A 22 1555 1555 1.33 LINK C ALA A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N GLN A 36 1555 1555 1.33 LINK C VAL A 56 N MSE A 57 1555 1555 1.34 LINK C MSE A 57 N GLU A 58 1555 1555 1.33 LINK C LEU A 69 N MSE A 70 1555 1555 1.32 LINK C MSE A 70 N VAL A 71 1555 1555 1.32 LINK C LEU A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N ASN A 109 1555 1555 1.33 LINK C GLU A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N GLY A 131 1555 1555 1.34 LINK C ARG A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N GLY A 139 1555 1555 1.33 LINK C GLU A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N SER A 147 1555 1555 1.33 LINK SG CYS A 7 MG MG A 155 1555 1555 2.58 LINK OD2 ASP A 9 MG MG A 155 1555 1555 2.36 LINK OE1AGLU A 59 ZN ZN A 153 1555 1555 2.13 LINK OE2AGLU A 59 ZN ZN A 153 1555 1555 2.73 LINK OE2BGLU A 59 ZN ZN A 153 1555 1555 1.69 LINK NE2 HIS A 98 ZN ZN A 153 1555 1555 1.99 LINK OE1 GLU A 114 ZN ZN A 153 3665 1555 1.98 LINK OE1 GLU A 117 ZN ZN A 153 3665 1555 1.97 LINK NE2 HIS A 126 MG MG A 154 1555 1555 2.38 LINK OE2 GLU A 145 MG MG A 154 1555 1555 2.15 LINK OE1 GLU A 145 MG MG A 154 1555 1555 2.93 LINK OE2 GLU A 145 MG MG A 154 5555 1555 2.04 LINK MG MG A 154 O HOH A 364 1555 5555 2.66 LINK MG MG A 154 O HOH A 365 1555 1555 2.13 LINK MG MG A 154 O HOH A 365 1555 5555 2.63 LINK MG MG A 155 O1 FMT A 159 1555 1555 2.05 SITE 1 AC1 4 GLU A 59 HIS A 98 GLU A 114 GLU A 117 SITE 1 AC2 4 HIS A 126 GLU A 145 HOH A 364 HOH A 365 SITE 1 AC3 3 CYS A 7 ASP A 9 FMT A 159 SITE 1 AC4 7 LEU A 90 ASN A 91 LEU A 92 HIS A 126 SITE 2 AC4 7 THR A 128 TYR A 135 HOH A 325 SITE 1 AC5 9 ARG A 99 GLY A 102 ILE A 103 GLY A 104 SITE 2 AC5 9 HOH A 165 HOH A 181 HOH A 186 HOH A 258 SITE 3 AC5 9 HOH A 331 SITE 1 AC6 6 ARG A 18 TRP A 74 PRO A 75 HIS A 77 SITE 2 AC6 6 TYR A 88 HOH A 315 SITE 1 AC7 5 CYS A 7 ARG A 16 ARG A 23 MG A 155 SITE 2 AC7 5 HOH A 239 SITE 1 AC8 6 LEU A 82 GLN A 83 LYS A 85 ARG A 118 SITE 2 AC8 6 GLY A 119 HOH A 352 SITE 1 AC9 1 ASP A 41 CRYST1 102.520 102.520 39.680 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009754 0.005632 0.000000 0.00000 SCALE2 0.000000 0.011263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025202 0.00000