HEADER HYDROLASE/DNA 23-MAY-07 2Q10 TITLE RESTRICTION ENDONUCLEASE BCNI (WILD TYPE)-COGNATE DNA SUBSTRATE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3'); COMPND 3 CHAIN: C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3'); COMPND 7 CHAIN: D, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: R.BCNI; COMPND 11 CHAIN: A, B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: BREVIBACILLUS CENTROSPORUS; SOURCE 7 ORGANISM_TAXID: 54910; SOURCE 8 GENE: BCNIR; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: ER2267; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_VECTOR: PBAD24 KEYWDS ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, BCNI, HYDROLASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.SOKOLOWSKA,M.KAUS-DROBEK,H.CZAPINSKA,G.TAMULAITIS, AUTHOR 2 R.H.SZCZEPANOWSKI,C.URBANKE,V.SIKSNYS,M.BOCHTLER REVDAT 5 30-AUG-23 2Q10 1 REMARK LINK REVDAT 4 18-OCT-17 2Q10 1 REMARK REVDAT 3 13-JUL-11 2Q10 1 VERSN REVDAT 2 24-FEB-09 2Q10 1 VERSN REVDAT 1 05-JUN-07 2Q10 0 JRNL AUTH M.SOKOLOWSKA,M.KAUS-DROBEK,H.CZAPINSKA,G.TAMULAITIS, JRNL AUTH 2 R.H.SZCZEPANOWSKI,C.URBANKE,V.SIKSNYS,M.BOCHTLER JRNL TITL MONOMERIC RESTRICTION ENDONUCLEASE BCNI IN THE APO FORM AND JRNL TITL 2 IN AN ASYMMETRIC COMPLEX WITH TARGET DNA. JRNL REF J.MOL.BIOL. V. 369 722 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17445830 JRNL DOI 10.1016/J.JMB.2007.03.018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SOKOLOWSKA,M.KAUS-DROBEK,H.CZAPINSKA,G.TAMULAITIS, REMARK 1 AUTH 2 V.SIKSNYS,M.BOCHTLER REMARK 1 TITL RESTRICTION ENDONUCLEASES THAT RESEMBLE A COMPONENT OF THE REMARK 1 TITL 2 BACTERIAL DNA REPAIR MACHINERY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2882 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3844 REMARK 3 NUCLEIC ACID ATOMS : 890 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 645 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5175 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3330 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7173 ; 1.350 ; 2.193 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8206 ; 0.911 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 522 ; 6.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;33.949 ;24.660 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 830 ;12.796 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.347 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 799 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5094 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 898 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 891 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3576 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2221 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2350 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 531 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 13 ; 0.151 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2656 ; 0.799 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1029 ; 0.166 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4134 ; 1.032 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3206 ; 1.800 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3039 ; 2.237 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 69 REMARK 3 RESIDUE RANGE : A 156 A 182 REMARK 3 RESIDUE RANGE : A 233 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7180 26.3970 47.6420 REMARK 3 T TENSOR REMARK 3 T11: -0.0468 T22: -0.0386 REMARK 3 T33: 0.0070 T12: 0.0030 REMARK 3 T13: -0.0039 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.8372 L22: 1.9141 REMARK 3 L33: 0.6601 L12: -0.0446 REMARK 3 L13: -0.1734 L23: -0.2011 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.0260 S13: 0.0254 REMARK 3 S21: 0.0653 S22: -0.0151 S23: 0.0062 REMARK 3 S31: -0.1010 S32: -0.0226 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 155 REMARK 3 RESIDUE RANGE : A 183 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 69.9250 13.8590 49.6360 REMARK 3 T TENSOR REMARK 3 T11: -0.0529 T22: 0.0381 REMARK 3 T33: 0.0144 T12: -0.0084 REMARK 3 T13: -0.0070 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.4679 L22: 0.5355 REMARK 3 L33: 0.8476 L12: -0.2670 REMARK 3 L13: 0.0091 L23: 0.0973 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: -0.0607 S13: 0.0377 REMARK 3 S21: -0.0137 S22: 0.0236 S23: -0.1026 REMARK 3 S31: -0.0199 S32: 0.2411 S33: 0.0292 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 69 REMARK 3 RESIDUE RANGE : B 156 B 182 REMARK 3 RESIDUE RANGE : B 233 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3620 25.7790 89.5470 REMARK 3 T TENSOR REMARK 3 T11: -0.0524 T22: -0.0308 REMARK 3 T33: -0.0090 T12: 0.0187 REMARK 3 T13: -0.0093 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.2302 L22: 1.4013 REMARK 3 L33: 0.5426 L12: -0.2925 REMARK 3 L13: -0.1707 L23: 0.1437 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: -0.1215 S13: 0.0537 REMARK 3 S21: 0.0828 S22: 0.0554 S23: 0.0268 REMARK 3 S31: -0.0679 S32: -0.0458 S33: -0.0222 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 155 REMARK 3 RESIDUE RANGE : B 183 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 70.4620 13.6600 88.9700 REMARK 3 T TENSOR REMARK 3 T11: -0.0509 T22: -0.0468 REMARK 3 T33: 0.0154 T12: -0.0035 REMARK 3 T13: -0.0043 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.8376 L22: 0.6625 REMARK 3 L33: 0.3235 L12: 0.0100 REMARK 3 L13: 0.1805 L23: 0.0772 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.0710 S13: -0.0101 REMARK 3 S21: -0.0016 S22: 0.0276 S23: -0.1197 REMARK 3 S31: -0.0194 S32: 0.0378 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -4 C 6 REMARK 3 RESIDUE RANGE : D -4 D 6 REMARK 3 ORIGIN FOR THE GROUP (A): 59.5770 12.1180 46.6290 REMARK 3 T TENSOR REMARK 3 T11: -0.0447 T22: -0.0200 REMARK 3 T33: 0.0066 T12: 0.0104 REMARK 3 T13: 0.0038 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.2835 L22: 0.6858 REMARK 3 L33: 1.1066 L12: 0.1527 REMARK 3 L13: 0.2037 L23: -0.0113 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: 0.0340 S13: -0.0035 REMARK 3 S21: -0.0434 S22: 0.0819 S23: -0.0102 REMARK 3 S31: 0.0479 S32: 0.0461 S33: -0.0787 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E -4 E 6 REMARK 3 RESIDUE RANGE : F -4 F 6 REMARK 3 ORIGIN FOR THE GROUP (A): 59.8860 11.9520 86.8120 REMARK 3 T TENSOR REMARK 3 T11: -0.0429 T22: -0.0540 REMARK 3 T33: 0.0156 T12: 0.0066 REMARK 3 T13: 0.0030 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.1242 L22: 0.4209 REMARK 3 L33: 1.1768 L12: -0.1321 REMARK 3 L13: 0.6145 L23: -0.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: -0.0040 S13: -0.0462 REMARK 3 S21: -0.0222 S22: 0.0707 S23: 0.0035 REMARK 3 S31: -0.0035 S32: -0.0209 S33: -0.0768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT HAVE BEEN USED. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 2Q10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000043013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57635 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26000 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2ODI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M CALCIUM CHLORIDE DIHYDRATE, 0.1 REMARK 280 M SODIUM ACETATE TRIHYDRATE, 30% (V/V) 2-METHYL-2,4-PENTANEDIOL , REMARK 280 PH 4.60, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.67700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.77550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.67700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.77550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 47 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D -2 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC F -2 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 30 34.39 -154.69 REMARK 500 ARG A 67 -88.10 -110.73 REMARK 500 GLN A 139 -119.04 58.27 REMARK 500 GLU A 184 64.12 61.69 REMARK 500 ARG B 30 37.55 -152.59 REMARK 500 ARG B 67 -91.63 -103.57 REMARK 500 GLN B 139 -121.90 53.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C -1 O3' REMARK 620 2 DC C 0 OP1 50.7 REMARK 620 3 ASN A 49 OD1 81.2 128.8 REMARK 620 4 ASP A 55 OD1 138.1 91.2 139.7 REMARK 620 5 HOH A 745 O 99.1 83.8 88.4 92.2 REMARK 620 6 HOH A 764 O 78.3 90.0 97.0 86.0 173.5 REMARK 620 7 HOH A 790 O 150.6 145.8 72.1 70.7 68.7 116.4 REMARK 620 8 HOH A 878 O 146.4 136.0 93.0 50.4 114.0 69.5 49.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 0 OP1 REMARK 620 2 HOH C 704 O 79.9 REMARK 620 3 ASP A 55 OD2 100.5 172.5 REMARK 620 4 GLU A 60 OE2 98.2 80.3 92.2 REMARK 620 5 LEU A 61 O 165.1 87.3 93.1 87.0 REMARK 620 6 HOH A 707 O 87.3 99.9 87.6 174.4 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC E 0 OP1 REMARK 620 2 HOH E 80 O 78.2 REMARK 620 3 ASP B 55 OD1 75.3 150.0 REMARK 620 4 ASP B 55 OD2 107.7 157.2 48.6 REMARK 620 5 GLU B 60 OE2 93.8 80.3 114.9 77.4 REMARK 620 6 LEU B 61 O 165.7 87.8 117.6 86.3 86.4 REMARK 620 7 HOH B 736 O 91.4 97.2 70.0 104.5 173.7 87.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ODI RELATED DB: PDB REMARK 900 RESTRICTION ENDONUCLEASE BCNI-COGNATE DNA SUBSTRATE COMPLEX REMARK 900 RELATED ID: 2ODH RELATED DB: PDB REMARK 900 RESTRICTION ENDONUCLEASE BCNI IN THE ABSENCE OF DNA DBREF 2Q10 A 1 238 UNP Q8RNV8 Q8RNV8_9BACL 1 238 DBREF 2Q10 B 1 238 UNP Q8RNV8 Q8RNV8_9BACL 1 238 DBREF 2Q10 C -4 6 PDB 2Q10 2Q10 -4 6 DBREF 2Q10 D -4 6 PDB 2Q10 2Q10 -4 6 DBREF 2Q10 E -4 6 PDB 2Q10 2Q10 -4 6 DBREF 2Q10 F -4 6 PDB 2Q10 2Q10 -4 6 SEQRES 1 C 11 DA DA DC DC DC DG DG DA DG DA DC SEQRES 1 D 11 DC DT DC DC DG DG DG DT DT DG DT SEQRES 1 E 11 DA DA DC DC DC DG DG DA DG DA DC SEQRES 1 F 11 DC DT DC DC DG DG DG DT DT DG DT SEQRES 1 A 238 MET LYS ILE TRP SER LYS GLU GLU VAL VAL ASN LYS LEU SEQRES 2 A 238 HIS GLU ILE LYS ASN LYS GLY TYR LEU SER VAL PRO THR SEQRES 3 A 238 ASP MET PHE ARG THR ASP ASP GLY VAL VAL GLY GLN ILE SEQRES 4 A 238 LEU GLU ARG GLN PHE GLY VAL GLN GLU ASN ASN ILE THR SEQRES 5 A 238 LEU GLY ASP LEU GLY GLU PHE GLU LEU LYS GLY MET ARG SEQRES 6 A 238 ASN ARG LYS ALA LYS SER ASN LEU THR LEU PHE HIS LYS SEQRES 7 A 238 LYS PRO VAL ALA GLY GLN THR VAL ILE GLN ILE PHE ASN SEQRES 8 A 238 ARG PHE GLY TYR VAL LYS PRO SER SER ARG ASN PRO GLU SEQRES 9 A 238 VAL MET LYS LYS LYS LEU PHE THR THR ILE LYS GLY GLY SEQRES 10 A 238 ARG LEU ASN ASN LEU GLY LEU THR LEU ASN ALA LYS HIS SEQRES 11 A 238 ALA SER GLU ILE ASN LEU TYR TYR GLN ASP GLU TYR LEU SEQRES 12 A 238 SER THR TRP ASP LEU ASN LEU SER LYS ILE GLU LYS LEU SEQRES 13 A 238 VAL LEU VAL PHE ALA GLU THR ILE GLY ARG ALA ASN SER SEQRES 14 A 238 PRO GLU GLU GLN PHE HIS PHE THR LYS ALA TYR MET LEU SEQRES 15 A 238 THR GLU ILE ASN ASP ILE THR SER LEU ILE ASN ASP GLY SEQRES 16 A 238 VAL LEU VAL MET ASP LEU CYS ILE ASP GLN ASP LEU SER SEQRES 17 A 238 LYS SER LYS GLY PRO HIS ASP ARG GLY PRO HIS LEU ARG SEQRES 18 A 238 ILE PRO ILE SER LYS LEU ASP LYS LEU TYR ARG ASN ILE SEQRES 19 A 238 GLU ARG LEU LEU SEQRES 1 B 238 MET LYS ILE TRP SER LYS GLU GLU VAL VAL ASN LYS LEU SEQRES 2 B 238 HIS GLU ILE LYS ASN LYS GLY TYR LEU SER VAL PRO THR SEQRES 3 B 238 ASP MET PHE ARG THR ASP ASP GLY VAL VAL GLY GLN ILE SEQRES 4 B 238 LEU GLU ARG GLN PHE GLY VAL GLN GLU ASN ASN ILE THR SEQRES 5 B 238 LEU GLY ASP LEU GLY GLU PHE GLU LEU LYS GLY MET ARG SEQRES 6 B 238 ASN ARG LYS ALA LYS SER ASN LEU THR LEU PHE HIS LYS SEQRES 7 B 238 LYS PRO VAL ALA GLY GLN THR VAL ILE GLN ILE PHE ASN SEQRES 8 B 238 ARG PHE GLY TYR VAL LYS PRO SER SER ARG ASN PRO GLU SEQRES 9 B 238 VAL MET LYS LYS LYS LEU PHE THR THR ILE LYS GLY GLY SEQRES 10 B 238 ARG LEU ASN ASN LEU GLY LEU THR LEU ASN ALA LYS HIS SEQRES 11 B 238 ALA SER GLU ILE ASN LEU TYR TYR GLN ASP GLU TYR LEU SEQRES 12 B 238 SER THR TRP ASP LEU ASN LEU SER LYS ILE GLU LYS LEU SEQRES 13 B 238 VAL LEU VAL PHE ALA GLU THR ILE GLY ARG ALA ASN SER SEQRES 14 B 238 PRO GLU GLU GLN PHE HIS PHE THR LYS ALA TYR MET LEU SEQRES 15 B 238 THR GLU ILE ASN ASP ILE THR SER LEU ILE ASN ASP GLY SEQRES 16 B 238 VAL LEU VAL MET ASP LEU CYS ILE ASP GLN ASP LEU SER SEQRES 17 B 238 LYS SER LYS GLY PRO HIS ASP ARG GLY PRO HIS LEU ARG SEQRES 18 B 238 ILE PRO ILE SER LYS LEU ASP LYS LEU TYR ARG ASN ILE SEQRES 19 B 238 GLU ARG LEU LEU HET CA C 703 1 HET CA A 701 1 HET CL A 705 1 HET CA B 702 1 HET CL B 704 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 7 CA 3(CA 2+) FORMUL 9 CL 2(CL 1-) FORMUL 12 HOH *645(H2 O) HELIX 1 1 SER A 5 LYS A 19 1 15 HELIX 2 2 GLY A 34 PHE A 44 1 11 HELIX 3 3 THR A 85 GLY A 94 1 10 HELIX 4 4 LEU A 150 GLU A 154 5 5 HELIX 5 5 ILE A 188 ASP A 194 1 7 HELIX 6 6 PRO A 223 SER A 225 5 3 HELIX 7 7 LYS A 226 LEU A 230 1 5 HELIX 8 8 SER B 5 ASN B 18 1 14 HELIX 9 9 PRO B 25 PHE B 29 5 5 HELIX 10 10 GLY B 34 PHE B 44 1 11 HELIX 11 11 THR B 85 GLY B 94 1 10 HELIX 12 12 LEU B 150 GLU B 154 5 5 HELIX 13 13 ASP B 187 ASP B 194 1 8 HELIX 14 14 PRO B 223 SER B 225 5 3 HELIX 15 15 LYS B 226 LEU B 230 1 5 SHEET 1 A 4 LEU A 22 SER A 23 0 SHEET 2 A 4 GLN A 173 ILE A 185 -1 O PHE A 174 N LEU A 22 SHEET 3 A 4 LEU A 156 ILE A 164 -1 N GLU A 162 O HIS A 175 SHEET 4 A 4 GLU A 60 ARG A 65 1 N LYS A 62 O VAL A 159 SHEET 1 B 3 LEU A 22 SER A 23 0 SHEET 2 B 3 GLN A 173 ILE A 185 -1 O PHE A 174 N LEU A 22 SHEET 3 B 3 TYR A 231 ARG A 236 -1 O GLU A 235 N MET A 181 SHEET 1 C 5 LEU A 73 HIS A 77 0 SHEET 2 C 5 HIS A 219 ILE A 222 -1 O LEU A 220 N LEU A 75 SHEET 3 C 5 VAL A 198 ASP A 206 -1 N ASP A 200 O HIS A 219 SHEET 4 C 5 MET A 106 ILE A 114 -1 N ILE A 114 O MET A 199 SHEET 5 C 5 TYR A 95 PRO A 98 -1 N TYR A 95 O LYS A 109 SHEET 1 D 4 LEU A 73 HIS A 77 0 SHEET 2 D 4 HIS A 219 ILE A 222 -1 O LEU A 220 N LEU A 75 SHEET 3 D 4 VAL A 198 ASP A 206 -1 N ASP A 200 O HIS A 219 SHEET 4 D 4 PRO A 213 ASP A 215 -1 O HIS A 214 N ASP A 204 SHEET 1 E 4 ALA A 82 GLY A 83 0 SHEET 2 E 4 GLU A 141 TRP A 146 -1 O THR A 145 N ALA A 82 SHEET 3 E 4 GLU A 133 TYR A 138 -1 N LEU A 136 O SER A 144 SHEET 4 E 4 LEU A 124 HIS A 130 -1 N ASN A 127 O ASN A 135 SHEET 1 F 4 LEU B 22 SER B 23 0 SHEET 2 F 4 GLN B 173 ILE B 185 -1 O PHE B 174 N LEU B 22 SHEET 3 F 4 LEU B 156 ILE B 164 -1 N LEU B 156 O LEU B 182 SHEET 4 F 4 GLU B 60 ARG B 65 1 N GLU B 60 O VAL B 157 SHEET 1 G 3 LEU B 22 SER B 23 0 SHEET 2 G 3 GLN B 173 ILE B 185 -1 O PHE B 174 N LEU B 22 SHEET 3 G 3 TYR B 231 ARG B 236 -1 O GLU B 235 N MET B 181 SHEET 1 H 5 LEU B 73 HIS B 77 0 SHEET 2 H 5 HIS B 219 ILE B 222 -1 O LEU B 220 N LEU B 75 SHEET 3 H 5 VAL B 198 ASP B 206 -1 N ASP B 200 O HIS B 219 SHEET 4 H 5 MET B 106 ILE B 114 -1 N ILE B 114 O MET B 199 SHEET 5 H 5 TYR B 95 PRO B 98 -1 N TYR B 95 O LYS B 109 SHEET 1 I 4 LEU B 73 HIS B 77 0 SHEET 2 I 4 HIS B 219 ILE B 222 -1 O LEU B 220 N LEU B 75 SHEET 3 I 4 VAL B 198 ASP B 206 -1 N ASP B 200 O HIS B 219 SHEET 4 I 4 HIS B 214 ASP B 215 -1 O HIS B 214 N ASP B 204 SHEET 1 J 4 ALA B 82 GLY B 83 0 SHEET 2 J 4 GLU B 141 TRP B 146 -1 O THR B 145 N ALA B 82 SHEET 3 J 4 GLU B 133 TYR B 138 -1 N LEU B 136 O LEU B 143 SHEET 4 J 4 LEU B 124 HIS B 130 -1 N LYS B 129 O GLU B 133 LINK O3' DC C -1 CA CA C 703 1555 1555 3.08 LINK OP1 DC C 0 CA CA C 703 1555 1555 2.62 LINK OP1 DC C 0 CA CA A 701 1555 1555 2.32 LINK CA CA C 703 OD1 ASN A 49 1555 1555 2.56 LINK CA CA C 703 OD1 ASP A 55 1555 1555 2.23 LINK CA CA C 703 O HOH A 745 1555 1555 2.19 LINK CA CA C 703 O HOH A 764 1555 1555 2.27 LINK CA CA C 703 O HOH A 790 1555 1555 3.33 LINK CA CA C 703 O HOH A 878 1555 1555 3.37 LINK O HOH C 704 CA CA A 701 1555 1555 2.40 LINK OP1 DC E 0 CA CA B 702 1555 1555 2.27 LINK O HOH E 80 CA CA B 702 1555 1555 2.46 LINK OD2 ASP A 55 CA CA A 701 1555 1555 2.12 LINK OE2 GLU A 60 CA CA A 701 1555 1555 2.32 LINK O LEU A 61 CA CA A 701 1555 1555 2.32 LINK CA CA A 701 O HOH A 707 1555 1555 2.24 LINK OD1 ASP B 55 CA CA B 702 1555 1555 2.77 LINK OD2 ASP B 55 CA CA B 702 1555 1555 2.45 LINK OE2 GLU B 60 CA CA B 702 1555 1555 2.35 LINK O LEU B 61 CA CA B 702 1555 1555 2.31 LINK CA CA B 702 O HOH B 736 1555 1555 2.39 SITE 1 AC1 6 ASN A 49 ASP A 55 HOH A 745 HOH A 764 SITE 2 AC1 6 DC C -1 DC C 0 SITE 1 AC2 6 ASP A 55 GLU A 60 LEU A 61 HOH A 707 SITE 2 AC2 6 DC C 0 HOH C 704 SITE 1 AC3 5 PRO A 80 THR A 85 VAL A 86 HOH A 724 SITE 2 AC3 5 HOH A 858 SITE 1 AC4 6 ASP B 55 GLU B 60 LEU B 61 HOH B 736 SITE 2 AC4 6 DC E 0 HOH E 80 SITE 1 AC5 1 VAL B 86 CRYST1 81.354 87.551 79.162 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012632 0.00000