data_2Q12 # _entry.id 2Q12 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Q12 RCSB RCSB043015 WWPDB D_1000043015 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2Q13 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Q12 _pdbx_database_status.recvd_initial_deposition_date 2007-05-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, X.C.' 1 'Zhu, G.' 2 # _citation.id primary _citation.title 'Structure of the APPL1 BAR-PH domain and characterization of its interaction with Rab5.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 26 _citation.page_first 3484 _citation.page_last 3493 _citation.year 2007 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17581628 _citation.pdbx_database_id_DOI 10.1038/sj.emboj.7601771 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhu, G.' 1 primary 'Chen, J.' 2 primary 'Liu, J.' 3 primary 'Brunzelle, J.S.' 4 primary 'Huang, B.' 5 primary 'Wakeham, N.' 6 primary 'Terzyan, S.' 7 primary 'Li, X.' 8 primary 'Rao, Z.' 9 primary 'Li, G.' 10 primary 'Zhang, X.C.' 11 # _cell.entry_id 2Q12 _cell.length_a 52.985 _cell.length_b 129.199 _cell.length_c 36.854 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Q12 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DCC-interacting protein 13 alpha' 31157.240 1 ? ? 'residues 5-265, BAR domain' ? 2 water nat water 18.015 147 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Dip13 alpha' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSH(MSE)DKLPIEETLEDSPQTRSLLGVFEEDATAISNY(MSE)NQLYQA(MSE)HRIYDAQNELSAATHLTSKLLKEY EKQRFPLGGDDEV(MSE)SSTLQQFSKVIDELSSCHAVLSTQLADA(MSE)(MSE)FPITQFKERDLKEILTLKEVFQIA SNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQT(MSE)(MSE)HYFCALNTLQYKKKIALLEPLLGY(MSE) QAQISFFK(MSE)GSENLNEQLEEFLANIGTSVQNVRRE(MSE)DSDIET(MSE)QQTIEDLEVASDPLYVPD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMDKLPIEETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDE VMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVK YEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREM DSDIETMQQTIEDLEVASDPLYVPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MSE n 1 5 ASP n 1 6 LYS n 1 7 LEU n 1 8 PRO n 1 9 ILE n 1 10 GLU n 1 11 GLU n 1 12 THR n 1 13 LEU n 1 14 GLU n 1 15 ASP n 1 16 SER n 1 17 PRO n 1 18 GLN n 1 19 THR n 1 20 ARG n 1 21 SER n 1 22 LEU n 1 23 LEU n 1 24 GLY n 1 25 VAL n 1 26 PHE n 1 27 GLU n 1 28 GLU n 1 29 ASP n 1 30 ALA n 1 31 THR n 1 32 ALA n 1 33 ILE n 1 34 SER n 1 35 ASN n 1 36 TYR n 1 37 MSE n 1 38 ASN n 1 39 GLN n 1 40 LEU n 1 41 TYR n 1 42 GLN n 1 43 ALA n 1 44 MSE n 1 45 HIS n 1 46 ARG n 1 47 ILE n 1 48 TYR n 1 49 ASP n 1 50 ALA n 1 51 GLN n 1 52 ASN n 1 53 GLU n 1 54 LEU n 1 55 SER n 1 56 ALA n 1 57 ALA n 1 58 THR n 1 59 HIS n 1 60 LEU n 1 61 THR n 1 62 SER n 1 63 LYS n 1 64 LEU n 1 65 LEU n 1 66 LYS n 1 67 GLU n 1 68 TYR n 1 69 GLU n 1 70 LYS n 1 71 GLN n 1 72 ARG n 1 73 PHE n 1 74 PRO n 1 75 LEU n 1 76 GLY n 1 77 GLY n 1 78 ASP n 1 79 ASP n 1 80 GLU n 1 81 VAL n 1 82 MSE n 1 83 SER n 1 84 SER n 1 85 THR n 1 86 LEU n 1 87 GLN n 1 88 GLN n 1 89 PHE n 1 90 SER n 1 91 LYS n 1 92 VAL n 1 93 ILE n 1 94 ASP n 1 95 GLU n 1 96 LEU n 1 97 SER n 1 98 SER n 1 99 CYS n 1 100 HIS n 1 101 ALA n 1 102 VAL n 1 103 LEU n 1 104 SER n 1 105 THR n 1 106 GLN n 1 107 LEU n 1 108 ALA n 1 109 ASP n 1 110 ALA n 1 111 MSE n 1 112 MSE n 1 113 PHE n 1 114 PRO n 1 115 ILE n 1 116 THR n 1 117 GLN n 1 118 PHE n 1 119 LYS n 1 120 GLU n 1 121 ARG n 1 122 ASP n 1 123 LEU n 1 124 LYS n 1 125 GLU n 1 126 ILE n 1 127 LEU n 1 128 THR n 1 129 LEU n 1 130 LYS n 1 131 GLU n 1 132 VAL n 1 133 PHE n 1 134 GLN n 1 135 ILE n 1 136 ALA n 1 137 SER n 1 138 ASN n 1 139 ASP n 1 140 HIS n 1 141 ASP n 1 142 ALA n 1 143 ALA n 1 144 ILE n 1 145 ASN n 1 146 ARG n 1 147 TYR n 1 148 SER n 1 149 ARG n 1 150 LEU n 1 151 SER n 1 152 LYS n 1 153 LYS n 1 154 ARG n 1 155 GLU n 1 156 ASN n 1 157 ASP n 1 158 LYS n 1 159 VAL n 1 160 LYS n 1 161 TYR n 1 162 GLU n 1 163 VAL n 1 164 THR n 1 165 GLU n 1 166 ASP n 1 167 VAL n 1 168 TYR n 1 169 THR n 1 170 SER n 1 171 ARG n 1 172 LYS n 1 173 LYS n 1 174 GLN n 1 175 HIS n 1 176 GLN n 1 177 THR n 1 178 MSE n 1 179 MSE n 1 180 HIS n 1 181 TYR n 1 182 PHE n 1 183 CYS n 1 184 ALA n 1 185 LEU n 1 186 ASN n 1 187 THR n 1 188 LEU n 1 189 GLN n 1 190 TYR n 1 191 LYS n 1 192 LYS n 1 193 LYS n 1 194 ILE n 1 195 ALA n 1 196 LEU n 1 197 LEU n 1 198 GLU n 1 199 PRO n 1 200 LEU n 1 201 LEU n 1 202 GLY n 1 203 TYR n 1 204 MSE n 1 205 GLN n 1 206 ALA n 1 207 GLN n 1 208 ILE n 1 209 SER n 1 210 PHE n 1 211 PHE n 1 212 LYS n 1 213 MSE n 1 214 GLY n 1 215 SER n 1 216 GLU n 1 217 ASN n 1 218 LEU n 1 219 ASN n 1 220 GLU n 1 221 GLN n 1 222 LEU n 1 223 GLU n 1 224 GLU n 1 225 PHE n 1 226 LEU n 1 227 ALA n 1 228 ASN n 1 229 ILE n 1 230 GLY n 1 231 THR n 1 232 SER n 1 233 VAL n 1 234 GLN n 1 235 ASN n 1 236 VAL n 1 237 ARG n 1 238 ARG n 1 239 GLU n 1 240 MSE n 1 241 ASP n 1 242 SER n 1 243 ASP n 1 244 ILE n 1 245 GLU n 1 246 THR n 1 247 MSE n 1 248 GLN n 1 249 GLN n 1 250 THR n 1 251 ILE n 1 252 GLU n 1 253 ASP n 1 254 LEU n 1 255 GLU n 1 256 VAL n 1 257 ALA n 1 258 SER n 1 259 ASP n 1 260 PRO n 1 261 LEU n 1 262 TYR n 1 263 VAL n 1 264 PRO n 1 265 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'APPL1, APPL, DIP13A, KIAA1428' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain B834 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DP13A_HUMAN _struct_ref.pdbx_db_accession Q9UKG1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DKLPIEETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSS TLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVT EDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDI ETMQQTIEDLEVASDPLYVPD ; _struct_ref.pdbx_align_begin 5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Q12 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UKG1 _struct_ref_seq.db_align_beg 5 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 265 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Q12 GLY A 1 ? UNP Q9UKG1 ? ? 'expression tag' 1 1 1 2Q12 SER A 2 ? UNP Q9UKG1 ? ? 'expression tag' 2 2 1 2Q12 HIS A 3 ? UNP Q9UKG1 ? ? 'expression tag' 3 3 1 2Q12 MSE A 4 ? UNP Q9UKG1 ? ? 'expression tag' 4 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Q12 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_percent_sol 39.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.1 M magnesium formate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2006-03-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock double-crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 2Q12 _reflns.observed_criterion_sigma_F -6 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.79 _reflns.d_resolution_low 50 _reflns.number_all 23548 _reflns.number_obs 23518 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.1 _reflns.B_iso_Wilson_estimate 25.8 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 78.1 _reflns_shell.Rmerge_I_obs 0.440 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.19 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1897 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2Q12 _refine.ls_number_reflns_obs 22273 _refine.ls_number_reflns_all 23473 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 1.79 _refine.ls_percent_reflns_obs 95.47 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_all 0.214 _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.255 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1200 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 34.596 _refine.aniso_B[1][1] 3.99 _refine.aniso_B[2][2] -2.54 _refine.aniso_B[3][3] -1.45 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.155 _refine.pdbx_overall_ESU_R_Free 0.146 _refine.overall_SU_ML 0.106 _refine.overall_SU_B 3.355 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1966 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 147 _refine_hist.number_atoms_total 2113 _refine_hist.d_res_high 1.79 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 2025 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.505 1.962 ? 2734 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.586 5.000 ? 254 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.524 25.577 ? 104 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.695 15.000 ? 398 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.261 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.104 0.200 ? 309 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1512 'X-RAY DIFFRACTION' ? r_nbd_refined 0.216 0.200 ? 914 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 1440 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.156 0.200 ? 123 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.185 0.200 ? 125 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.122 0.200 ? 18 'X-RAY DIFFRACTION' ? r_mcbond_it 3.374 2.000 ? 1277 'X-RAY DIFFRACTION' ? r_mcangle_it 4.269 3.000 ? 1993 'X-RAY DIFFRACTION' ? r_scbond_it 4.328 2.000 ? 841 'X-RAY DIFFRACTION' ? r_scangle_it 6.155 3.000 ? 734 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.792 _refine_ls_shell.d_res_low 1.839 _refine_ls_shell.number_reflns_R_work 1249 _refine_ls_shell.R_factor_R_work 0.266 _refine_ls_shell.percent_reflns_obs 72.79 _refine_ls_shell.R_factor_R_free 0.312 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Q12 _struct.title 'Crystal Structure of BAR domain of APPL1' _struct.pdbx_descriptor 'DCC-interacting protein 13 alpha' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Q12 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'APPL1, BAR domain, PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological dimer is generated from molecules in asymmetric unit and operation -x+1, -y, z' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 15 ? GLU A 67 ? ASP A 15 GLU A 67 1 ? 53 HELX_P HELX_P2 2 TYR A 68 ? GLN A 71 ? TYR A 68 GLN A 71 5 ? 4 HELX_P HELX_P3 3 GLU A 80 ? MSE A 111 ? GLU A 80 MSE A 111 1 ? 32 HELX_P HELX_P4 4 MSE A 111 ? ARG A 121 ? MSE A 111 ARG A 121 1 ? 11 HELX_P HELX_P5 5 ARG A 121 ? LYS A 152 ? ARG A 121 LYS A 152 1 ? 32 HELX_P HELX_P6 6 ASN A 156 ? LEU A 218 ? ASN A 156 LEU A 218 1 ? 63 HELX_P HELX_P7 7 ASN A 219 ? SER A 258 ? ASN A 219 SER A 258 1 ? 40 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A TYR 36 C ? ? ? 1_555 A MSE 37 N ? ? A TYR 36 A MSE 37 1_555 ? ? ? ? ? ? ? 1.320 ? covale2 covale ? ? A MSE 37 C ? ? ? 1_555 A ASN 38 N ? ? A MSE 37 A ASN 38 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A ALA 43 C ? ? ? 1_555 A MSE 44 N ? ? A ALA 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.317 ? covale4 covale ? ? A MSE 44 C ? ? ? 1_555 A HIS 45 N ? ? A MSE 44 A HIS 45 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A VAL 81 C ? ? ? 1_555 A MSE 82 N ? ? A VAL 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.339 ? covale6 covale ? ? A MSE 82 C ? ? ? 1_555 A SER 83 N ? ? A MSE 82 A SER 83 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? A ALA 110 C ? ? ? 1_555 A MSE 111 N ? ? A ALA 110 A MSE 111 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? A MSE 111 C ? ? ? 1_555 A MSE 112 N ? ? A MSE 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.349 ? covale9 covale ? ? A MSE 112 C ? ? ? 1_555 A PHE 113 N ? ? A MSE 112 A PHE 113 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale ? ? A THR 177 C ? ? ? 1_555 A MSE 178 N ? ? A THR 177 A MSE 178 1_555 ? ? ? ? ? ? ? 1.330 ? covale11 covale ? ? A MSE 178 C ? ? ? 1_555 A MSE 179 N ? ? A MSE 178 A MSE 179 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A MSE 179 C ? ? ? 1_555 A HIS 180 N ? ? A MSE 179 A HIS 180 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale ? ? A TYR 203 C ? ? ? 1_555 A MSE 204 N ? ? A TYR 203 A MSE 204 1_555 ? ? ? ? ? ? ? 1.341 ? covale14 covale ? ? A MSE 204 C ? ? ? 1_555 A GLN 205 N ? ? A MSE 204 A GLN 205 1_555 ? ? ? ? ? ? ? 1.330 ? covale15 covale ? ? A LYS 212 C ? ? ? 1_555 A MSE 213 N ? ? A LYS 212 A MSE 213 1_555 ? ? ? ? ? ? ? 1.332 ? covale16 covale ? ? A MSE 213 C ? ? ? 1_555 A GLY 214 N ? ? A MSE 213 A GLY 214 1_555 ? ? ? ? ? ? ? 1.328 ? covale17 covale ? ? A GLU 239 C ? ? ? 1_555 A MSE 240 N ? ? A GLU 239 A MSE 240 1_555 ? ? ? ? ? ? ? 1.338 ? covale18 covale ? ? A MSE 240 C ? ? ? 1_555 A ASP 241 N ? ? A MSE 240 A ASP 241 1_555 ? ? ? ? ? ? ? 1.332 ? covale19 covale ? ? A THR 246 C ? ? ? 1_555 A MSE 247 N ? ? A THR 246 A MSE 247 1_555 ? ? ? ? ? ? ? 1.336 ? covale20 covale ? ? A MSE 247 C ? ? ? 1_555 A GLN 248 N ? ? A MSE 247 A GLN 248 1_555 ? ? ? ? ? ? ? 1.324 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2Q12 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Q12 _atom_sites.fract_transf_matrix[1][1] 0.018873 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007740 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027134 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 MSE 4 4 ? ? ? A . n A 1 5 ASP 5 5 ? ? ? A . n A 1 6 LYS 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 PRO 8 8 ? ? ? A . n A 1 9 ILE 9 9 ? ? ? A . n A 1 10 GLU 10 10 ? ? ? A . n A 1 11 GLU 11 11 ? ? ? A . n A 1 12 THR 12 12 ? ? ? A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 MSE 37 37 37 MSE MSE A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 MSE 44 44 44 MSE MSE A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 ? ? ? A . n A 1 76 GLY 76 76 ? ? ? A . n A 1 77 GLY 77 77 ? ? ? A . n A 1 78 ASP 78 78 ? ? ? A . n A 1 79 ASP 79 79 ? ? ? A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 MSE 82 82 82 MSE MSE A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 MSE 111 111 111 MSE MSE A . n A 1 112 MSE 112 112 112 MSE MSE A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 HIS 140 140 140 HIS HIS A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 LYS 153 153 153 LYS LYS A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 GLN 174 174 174 GLN GLN A . n A 1 175 HIS 175 175 175 HIS HIS A . n A 1 176 GLN 176 176 176 GLN GLN A . n A 1 177 THR 177 177 177 THR THR A . n A 1 178 MSE 178 178 178 MSE MSE A . n A 1 179 MSE 179 179 179 MSE MSE A . n A 1 180 HIS 180 180 180 HIS HIS A . n A 1 181 TYR 181 181 181 TYR TYR A . n A 1 182 PHE 182 182 182 PHE PHE A . n A 1 183 CYS 183 183 183 CYS CYS A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 GLN 189 189 189 GLN GLN A . n A 1 190 TYR 190 190 190 TYR TYR A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 LYS 192 192 192 LYS LYS A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 GLU 198 198 198 GLU GLU A . n A 1 199 PRO 199 199 199 PRO PRO A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 TYR 203 203 203 TYR TYR A . n A 1 204 MSE 204 204 204 MSE MSE A . n A 1 205 GLN 205 205 205 GLN GLN A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 GLN 207 207 207 GLN GLN A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 SER 209 209 209 SER SER A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 PHE 211 211 211 PHE PHE A . n A 1 212 LYS 212 212 212 LYS LYS A . n A 1 213 MSE 213 213 213 MSE MSE A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 SER 215 215 215 SER SER A . n A 1 216 GLU 216 216 216 GLU GLU A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 ASN 219 219 219 ASN ASN A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 GLN 221 221 221 GLN GLN A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 GLU 223 223 223 GLU GLU A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 PHE 225 225 225 PHE PHE A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 ILE 229 229 229 ILE ILE A . n A 1 230 GLY 230 230 230 GLY GLY A . n A 1 231 THR 231 231 231 THR THR A . n A 1 232 SER 232 232 232 SER SER A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 GLN 234 234 234 GLN GLN A . n A 1 235 ASN 235 235 235 ASN ASN A . n A 1 236 VAL 236 236 236 VAL VAL A . n A 1 237 ARG 237 237 237 ARG ARG A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 MSE 240 240 240 MSE MSE A . n A 1 241 ASP 241 241 241 ASP ASP A . n A 1 242 SER 242 242 242 SER SER A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 ILE 244 244 244 ILE ILE A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 THR 246 246 246 THR THR A . n A 1 247 MSE 247 247 247 MSE MSE A . n A 1 248 GLN 248 248 248 GLN GLN A . n A 1 249 GLN 249 249 249 GLN GLN A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 ILE 251 251 251 ILE ILE A . n A 1 252 GLU 252 252 252 GLU GLU A . n A 1 253 ASP 253 253 253 ASP ASP A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 GLU 255 255 255 GLU GLU A . n A 1 256 VAL 256 256 256 VAL VAL A . n A 1 257 ALA 257 257 257 ALA ALA A . n A 1 258 SER 258 258 258 SER SER A . n A 1 259 ASP 259 259 259 ASP ASP A . n A 1 260 PRO 260 260 ? ? ? A . n A 1 261 LEU 261 261 ? ? ? A . n A 1 262 TYR 262 262 ? ? ? A . n A 1 263 VAL 263 263 ? ? ? A . n A 1 264 PRO 264 264 ? ? ? A . n A 1 265 ASP 265 265 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 266 1 HOH HOH A . B 2 HOH 2 267 2 HOH HOH A . B 2 HOH 3 268 3 HOH HOH A . B 2 HOH 4 269 4 HOH HOH A . B 2 HOH 5 270 5 HOH HOH A . B 2 HOH 6 271 6 HOH HOH A . B 2 HOH 7 272 7 HOH HOH A . B 2 HOH 8 273 8 HOH HOH A . B 2 HOH 9 274 9 HOH HOH A . B 2 HOH 10 275 10 HOH HOH A . B 2 HOH 11 276 11 HOH HOH A . B 2 HOH 12 277 12 HOH HOH A . B 2 HOH 13 278 13 HOH HOH A . B 2 HOH 14 279 14 HOH HOH A . B 2 HOH 15 280 15 HOH HOH A . B 2 HOH 16 281 16 HOH HOH A . B 2 HOH 17 282 17 HOH HOH A . B 2 HOH 18 283 18 HOH HOH A . B 2 HOH 19 284 19 HOH HOH A . B 2 HOH 20 285 20 HOH HOH A . B 2 HOH 21 286 21 HOH HOH A . B 2 HOH 22 287 22 HOH HOH A . B 2 HOH 23 288 23 HOH HOH A . B 2 HOH 24 289 24 HOH HOH A . B 2 HOH 25 290 25 HOH HOH A . B 2 HOH 26 291 26 HOH HOH A . B 2 HOH 27 292 27 HOH HOH A . B 2 HOH 28 293 28 HOH HOH A . B 2 HOH 29 294 29 HOH HOH A . B 2 HOH 30 295 30 HOH HOH A . B 2 HOH 31 296 31 HOH HOH A . B 2 HOH 32 297 32 HOH HOH A . B 2 HOH 33 298 33 HOH HOH A . B 2 HOH 34 299 34 HOH HOH A . B 2 HOH 35 300 35 HOH HOH A . B 2 HOH 36 301 36 HOH HOH A . B 2 HOH 37 302 37 HOH HOH A . B 2 HOH 38 303 38 HOH HOH A . B 2 HOH 39 304 39 HOH HOH A . B 2 HOH 40 305 40 HOH HOH A . B 2 HOH 41 306 41 HOH HOH A . B 2 HOH 42 307 42 HOH HOH A . B 2 HOH 43 308 43 HOH HOH A . B 2 HOH 44 309 44 HOH HOH A . B 2 HOH 45 310 45 HOH HOH A . B 2 HOH 46 311 46 HOH HOH A . B 2 HOH 47 312 47 HOH HOH A . B 2 HOH 48 313 48 HOH HOH A . B 2 HOH 49 314 49 HOH HOH A . B 2 HOH 50 315 50 HOH HOH A . B 2 HOH 51 316 51 HOH HOH A . B 2 HOH 52 317 52 HOH HOH A . B 2 HOH 53 318 53 HOH HOH A . B 2 HOH 54 319 54 HOH HOH A . B 2 HOH 55 320 55 HOH HOH A . B 2 HOH 56 321 56 HOH HOH A . B 2 HOH 57 322 57 HOH HOH A . B 2 HOH 58 323 58 HOH HOH A . B 2 HOH 59 324 59 HOH HOH A . B 2 HOH 60 325 60 HOH HOH A . B 2 HOH 61 326 61 HOH HOH A . B 2 HOH 62 327 62 HOH HOH A . B 2 HOH 63 328 63 HOH HOH A . B 2 HOH 64 329 64 HOH HOH A . B 2 HOH 65 330 65 HOH HOH A . B 2 HOH 66 331 66 HOH HOH A . B 2 HOH 67 332 67 HOH HOH A . B 2 HOH 68 333 68 HOH HOH A . B 2 HOH 69 334 69 HOH HOH A . B 2 HOH 70 335 70 HOH HOH A . B 2 HOH 71 336 71 HOH HOH A . B 2 HOH 72 337 72 HOH HOH A . B 2 HOH 73 338 73 HOH HOH A . B 2 HOH 74 339 74 HOH HOH A . B 2 HOH 75 340 75 HOH HOH A . B 2 HOH 76 341 76 HOH HOH A . B 2 HOH 77 342 77 HOH HOH A . B 2 HOH 78 343 78 HOH HOH A . B 2 HOH 79 344 79 HOH HOH A . B 2 HOH 80 345 80 HOH HOH A . B 2 HOH 81 346 81 HOH HOH A . B 2 HOH 82 347 82 HOH HOH A . B 2 HOH 83 348 83 HOH HOH A . B 2 HOH 84 349 84 HOH HOH A . B 2 HOH 85 350 85 HOH HOH A . B 2 HOH 86 351 86 HOH HOH A . B 2 HOH 87 352 87 HOH HOH A . B 2 HOH 88 353 88 HOH HOH A . B 2 HOH 89 354 89 HOH HOH A . B 2 HOH 90 355 90 HOH HOH A . B 2 HOH 91 356 91 HOH HOH A . B 2 HOH 92 357 92 HOH HOH A . B 2 HOH 93 358 93 HOH HOH A . B 2 HOH 94 359 94 HOH HOH A . B 2 HOH 95 360 95 HOH HOH A . B 2 HOH 96 361 96 HOH HOH A . B 2 HOH 97 362 97 HOH HOH A . B 2 HOH 98 363 98 HOH HOH A . B 2 HOH 99 364 99 HOH HOH A . B 2 HOH 100 365 100 HOH HOH A . B 2 HOH 101 366 101 HOH HOH A . B 2 HOH 102 367 102 HOH HOH A . B 2 HOH 103 368 103 HOH HOH A . B 2 HOH 104 369 104 HOH HOH A . B 2 HOH 105 370 105 HOH HOH A . B 2 HOH 106 371 106 HOH HOH A . B 2 HOH 107 372 107 HOH HOH A . B 2 HOH 108 373 108 HOH HOH A . B 2 HOH 109 374 109 HOH HOH A . B 2 HOH 110 375 110 HOH HOH A . B 2 HOH 111 376 111 HOH HOH A . B 2 HOH 112 377 112 HOH HOH A . B 2 HOH 113 378 113 HOH HOH A . B 2 HOH 114 379 114 HOH HOH A . B 2 HOH 115 380 115 HOH HOH A . B 2 HOH 116 381 116 HOH HOH A . B 2 HOH 117 382 117 HOH HOH A . B 2 HOH 118 383 118 HOH HOH A . B 2 HOH 119 384 119 HOH HOH A . B 2 HOH 120 385 120 HOH HOH A . B 2 HOH 121 386 121 HOH HOH A . B 2 HOH 122 387 122 HOH HOH A . B 2 HOH 123 388 123 HOH HOH A . B 2 HOH 124 389 124 HOH HOH A . B 2 HOH 125 390 125 HOH HOH A . B 2 HOH 126 391 126 HOH HOH A . B 2 HOH 127 392 127 HOH HOH A . B 2 HOH 128 393 128 HOH HOH A . B 2 HOH 129 394 129 HOH HOH A . B 2 HOH 130 395 130 HOH HOH A . B 2 HOH 131 396 131 HOH HOH A . B 2 HOH 132 397 132 HOH HOH A . B 2 HOH 133 398 133 HOH HOH A . B 2 HOH 134 399 134 HOH HOH A . B 2 HOH 135 400 135 HOH HOH A . B 2 HOH 136 401 136 HOH HOH A . B 2 HOH 137 402 137 HOH HOH A . B 2 HOH 138 403 138 HOH HOH A . B 2 HOH 139 404 139 HOH HOH A . B 2 HOH 140 405 140 HOH HOH A . B 2 HOH 141 406 141 HOH HOH A . B 2 HOH 142 407 142 HOH HOH A . B 2 HOH 143 408 143 HOH HOH A . B 2 HOH 144 409 144 HOH HOH A . B 2 HOH 145 410 145 HOH HOH A . B 2 HOH 146 411 146 HOH HOH A . B 2 HOH 147 412 147 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 37 A MSE 37 ? MET SELENOMETHIONINE 2 A MSE 44 A MSE 44 ? MET SELENOMETHIONINE 3 A MSE 82 A MSE 82 ? MET SELENOMETHIONINE 4 A MSE 111 A MSE 111 ? MET SELENOMETHIONINE 5 A MSE 112 A MSE 112 ? MET SELENOMETHIONINE 6 A MSE 178 A MSE 178 ? MET SELENOMETHIONINE 7 A MSE 179 A MSE 179 ? MET SELENOMETHIONINE 8 A MSE 204 A MSE 204 ? MET SELENOMETHIONINE 9 A MSE 213 A MSE 213 ? MET SELENOMETHIONINE 10 A MSE 240 A MSE 240 ? MET SELENOMETHIONINE 11 A MSE 247 A MSE 247 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8640 ? 1 MORE -87 ? 1 'SSA (A^2)' 25590 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 52.9850000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHARP phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 404 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 412 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A MSE 4 ? A MSE 4 5 1 Y 1 A ASP 5 ? A ASP 5 6 1 Y 1 A LYS 6 ? A LYS 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A PRO 8 ? A PRO 8 9 1 Y 1 A ILE 9 ? A ILE 9 10 1 Y 1 A GLU 10 ? A GLU 10 11 1 Y 1 A GLU 11 ? A GLU 11 12 1 Y 1 A THR 12 ? A THR 12 13 1 Y 1 A LEU 75 ? A LEU 75 14 1 Y 1 A GLY 76 ? A GLY 76 15 1 Y 1 A GLY 77 ? A GLY 77 16 1 Y 1 A ASP 78 ? A ASP 78 17 1 Y 1 A ASP 79 ? A ASP 79 18 1 Y 1 A PRO 260 ? A PRO 260 19 1 Y 1 A LEU 261 ? A LEU 261 20 1 Y 1 A TYR 262 ? A TYR 262 21 1 Y 1 A VAL 263 ? A VAL 263 22 1 Y 1 A PRO 264 ? A PRO 264 23 1 Y 1 A ASP 265 ? A ASP 265 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #