HEADER MEMBRANE PROTEIN 28-MAY-07 2Q2F TITLE STRUCTURE OF THE HUMAN SELENOPROTEIN S (VCP-INTERACTING MEMBRANE TITLE 2 PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SELENOPROTEIN S; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COILED-COIL DOMAIN, RESIDUES 52-122; COMPND 5 SYNONYM: VCP-INTERACTING MEMBRANE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SELS, VIMP, AD-015, SBBI8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-LIC KEYWDS ANTI-PARALLEL COILED-COIL, ENDOPLASMIC RETICULUM, MEMBRANE, SELENIUM, KEYWDS 2 SELENOCYSTEINE, TRANSMEMBRANE, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, SGC, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,R.PARAMANATHAN,C.BUTLER-COLE,J.WEIGELT,M.SUNDSTROM, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 16-OCT-24 2Q2F 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2Q2F 1 VERSN REVDAT 2 24-FEB-09 2Q2F 1 VERSN REVDAT 1 05-JUN-07 2Q2F 0 JRNL AUTH J.R.WALKER,R.PARAMANATHAN,C.BUTLER-COLE,J.WEIGELT, JRNL AUTH 2 M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV, JRNL AUTH 3 S.DHE-PAGANON JRNL TITL HUMAN SELENOPROTEIN S (VCP-INTERACTING MEMBRANE PROTEIN). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 12947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 668 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 816 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.1830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.658 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 641 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 858 ; 1.498 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 82 ; 3.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ;30.990 ;22.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 142 ;14.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.702 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 92 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 478 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 292 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 464 ; 0.286 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 37 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.244 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 411 ; 1.856 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 636 ; 2.356 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 255 ; 4.771 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 222 ; 6.453 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5783 9.3324 15.0445 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.0942 REMARK 3 T33: 0.0831 T12: -0.0488 REMARK 3 T13: -0.0309 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 5.9482 L22: 0.6346 REMARK 3 L33: 5.2116 L12: 1.1038 REMARK 3 L13: 2.0383 L23: 0.7160 REMARK 3 S TENSOR REMARK 3 S11: -0.1732 S12: 0.1692 S13: 0.2357 REMARK 3 S21: 0.2202 S22: 0.0005 S23: -0.1566 REMARK 3 S31: -0.4700 S32: 0.3229 S33: 0.1727 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1033 2.6669 19.5414 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1068 REMARK 3 T33: 0.0523 T12: -0.0193 REMARK 3 T13: -0.0448 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.0757 L22: 9.0769 REMARK 3 L33: 9.8449 L12: 0.8181 REMARK 3 L13: -0.7316 L23: -8.7110 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: -0.0236 S13: 0.0059 REMARK 3 S21: 0.0342 S22: -0.2071 S23: -0.0627 REMARK 3 S31: 0.0200 S32: 0.4013 S33: 0.2955 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7237 -1.4304 25.2265 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.0730 REMARK 3 T33: 0.0621 T12: 0.0040 REMARK 3 T13: -0.0331 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.6643 L22: 1.2835 REMARK 3 L33: 8.5385 L12: 0.5103 REMARK 3 L13: -1.7005 L23: -1.9206 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: -0.0258 S13: 0.0572 REMARK 3 S21: 0.0177 S22: -0.1475 S23: 0.0037 REMARK 3 S31: -0.1472 S32: 0.0106 S33: 0.0389 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5435 -9.0851 33.4654 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.0774 REMARK 3 T33: 0.0631 T12: -0.0114 REMARK 3 T13: -0.0123 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.6050 L22: 3.3224 REMARK 3 L33: 9.1303 L12: 1.1063 REMARK 3 L13: -5.4263 L23: -3.3597 REMARK 3 S TENSOR REMARK 3 S11: -0.2602 S12: -0.1133 S13: -0.1661 REMARK 3 S21: -0.3228 S22: 0.1109 S23: -0.1144 REMARK 3 S31: 0.5219 S32: -0.0552 S33: 0.1493 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2222 -8.9463 39.8312 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: 0.0911 REMARK 3 T33: 0.0917 T12: -0.0060 REMARK 3 T13: -0.0279 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.2439 L22: 5.9938 REMARK 3 L33: 0.6827 L12: 2.6621 REMARK 3 L13: -0.2772 L23: -1.0222 REMARK 3 S TENSOR REMARK 3 S11: -0.2528 S12: 0.0418 S13: -0.0050 REMARK 3 S21: -0.0292 S22: 0.2182 S23: 0.0047 REMARK 3 S31: 0.0612 S32: -0.0074 S33: 0.0346 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2802 -11.5003 45.2245 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0806 REMARK 3 T33: 0.1075 T12: -0.0008 REMARK 3 T13: 0.0027 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 5.5306 L22: 1.1259 REMARK 3 L33: 3.0968 L12: -0.4778 REMARK 3 L13: -3.2422 L23: -0.6930 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.1132 S13: 0.0196 REMARK 3 S21: -0.0232 S22: -0.0930 S23: 0.1513 REMARK 3 S31: -0.1344 S32: -0.1762 S33: 0.0470 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7380 -10.6834 51.0636 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.1269 REMARK 3 T33: 0.0754 T12: 0.0163 REMARK 3 T13: 0.0168 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 24.1225 L22: 11.5571 REMARK 3 L33: 5.8614 L12: -1.8224 REMARK 3 L13: -11.3643 L23: 1.2021 REMARK 3 S TENSOR REMARK 3 S11: 0.2598 S12: -0.3071 S13: 0.4205 REMARK 3 S21: -0.1556 S22: -0.2063 S23: 0.0481 REMARK 3 S31: -0.2009 S32: -0.5047 S33: -0.0534 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0279 -14.2070 55.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.0240 T22: 0.1532 REMARK 3 T33: 0.0933 T12: 0.0257 REMARK 3 T13: 0.0430 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 30.6602 L22: 2.5851 REMARK 3 L33: 7.1904 L12: 5.0544 REMARK 3 L13: -10.5725 L23: -4.2348 REMARK 3 S TENSOR REMARK 3 S11: -0.4106 S12: -0.6096 S13: -0.5909 REMARK 3 S21: -0.0025 S22: 0.0125 S23: 0.0457 REMARK 3 S31: 0.1927 S32: 0.1778 S33: 0.3980 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3768 -14.4323 60.3777 REMARK 3 T TENSOR REMARK 3 T11: -0.0815 T22: 0.1729 REMARK 3 T33: 0.0341 T12: 0.0266 REMARK 3 T13: 0.1275 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 26.6841 L22: 2.0588 REMARK 3 L33: 6.1599 L12: 0.3141 REMARK 3 L13: -10.0274 L23: 1.6266 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.5938 S13: 0.0421 REMARK 3 S21: -0.1193 S22: 0.0306 S23: 0.0601 REMARK 3 S31: -0.4376 S32: 0.2225 S33: -0.0375 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2911 -17.1010 66.4458 REMARK 3 T TENSOR REMARK 3 T11: 0.0828 T22: 0.2400 REMARK 3 T33: 0.1419 T12: 0.0307 REMARK 3 T13: -0.0021 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 20.3293 L22: 12.1557 REMARK 3 L33: 30.7241 L12: 3.2243 REMARK 3 L13: -12.1708 L23: -10.9418 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: -1.2932 S13: -0.8402 REMARK 3 S21: 0.6382 S22: -0.3629 S23: -0.5052 REMARK 3 S31: 0.5945 S32: 1.1540 S33: 0.3758 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4327 -17.3557 71.4811 REMARK 3 T TENSOR REMARK 3 T11: -0.0359 T22: 0.2093 REMARK 3 T33: 0.0800 T12: -0.0411 REMARK 3 T13: 0.0658 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 29.0737 L22: 8.4209 REMARK 3 L33: 23.5304 L12: 13.3046 REMARK 3 L13: -20.3258 L23: -11.7453 REMARK 3 S TENSOR REMARK 3 S11: 0.5071 S12: -1.2466 S13: 0.6570 REMARK 3 S21: 0.1547 S22: -0.6460 S23: 0.3888 REMARK 3 S31: -0.1511 S32: 1.5634 S33: 0.1389 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7756 -19.6142 77.0238 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.1195 REMARK 3 T33: 0.1406 T12: -0.0652 REMARK 3 T13: 0.0777 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 31.1950 L22: 11.2599 REMARK 3 L33: 20.5648 L12: 3.6741 REMARK 3 L13: -11.5087 L23: -14.6479 REMARK 3 S TENSOR REMARK 3 S11: 1.4451 S12: -1.6585 S13: 0.7222 REMARK 3 S21: -0.2521 S22: -0.0705 S23: 0.8866 REMARK 3 S31: -0.8359 S32: 0.2641 S33: -1.3746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2Q2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000043063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL AND K-B PAIR OF REMARK 200 BIOMORPH MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13654 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 31.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 25.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32500 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 100MM NACL, 50MM TRIS REMARK 280 -HCL PH 8.0, 1MM EDTA, 2MM CACL2, 5MM BETA-MERCAPTOETHANOL. REMARK 280 CRYSTALLIZATION BUFFER: 13% PEG2000 MME, 0.1M SODIUM ACETATE PH REMARK 280 4.6, 0.1M KSCN. CRYO: 30% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.83300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 9.35250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.83300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 9.35250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -X+1/2, Y+1/2, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -6.68007 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 113.78007 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 SER A 41 REMARK 465 SER A 42 REMARK 465 GLY A 43 REMARK 465 ARG A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 LEU A 47 REMARK 465 TYR A 48 REMARK 465 PHE A 49 REMARK 465 GLN A 50 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 99 CE NZ REMARK 470 GLU A 102 CD OE1 OE2 REMARK 470 LYS A 105 CE NZ REMARK 470 GLU A 109 CD OE1 OE2 REMARK 470 GLU A 110 CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 59 N CA C O CB CG CD REMARK 480 ARG A 59 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 DBREF 2Q2F A 52 122 UNP Q9BQE4 SELS_HUMAN 52 122 SEQADV 2Q2F MSE A 34 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F HIS A 35 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F HIS A 36 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F HIS A 37 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F HIS A 38 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F HIS A 39 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F HIS A 40 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F SER A 41 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F SER A 42 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F GLY A 43 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F ARG A 44 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F GLU A 45 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F ASN A 46 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F LEU A 47 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F TYR A 48 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F PHE A 49 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F GLN A 50 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F GLY A 51 UNP Q9BQE4 CLONING ARTIFACT SEQADV 2Q2F MSE A 89 UNP Q9BQE4 MET 89 MODIFIED RESIDUE SEQADV 2Q2F MSE A 118 UNP Q9BQE4 MET 118 MODIFIED RESIDUE SEQADV 2Q2F MSE A 122 UNP Q9BQE4 MET 122 MODIFIED RESIDUE SEQRES 1 A 89 MSE HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 89 LEU TYR PHE GLN GLY SER ALA ARG LEU ARG ALA LEU ARG SEQRES 3 A 89 GLN ARG GLN LEU ASP ARG ALA ALA ALA ALA VAL GLU PRO SEQRES 4 A 89 ASP VAL VAL VAL LYS ARG GLN GLU ALA LEU ALA ALA ALA SEQRES 5 A 89 ARG LEU LYS MSE GLN GLU GLU LEU ASN ALA GLN VAL GLU SEQRES 6 A 89 LYS HIS LYS GLU LYS LEU LYS GLN LEU GLU GLU GLU LYS SEQRES 7 A 89 ARG ARG GLN LYS ILE GLU MSE TRP ASP SER MSE MODRES 2Q2F MSE A 89 MET SELENOMETHIONINE MODRES 2Q2F MSE A 118 MET SELENOMETHIONINE MODRES 2Q2F MSE A 122 MET SELENOMETHIONINE HET MSE A 89 24 HET MSE A 118 16 HET MSE A 122 18 HET CL A 1 1 HET CL A 2 1 HET GOL A 3 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *68(H2 O) HELIX 1 1 SER A 52 ALA A 69 1 18 HELIX 2 2 GLU A 71 MSE A 122 1 52 LINK C LYS A 88 N AMSE A 89 1555 1555 1.34 LINK C LYS A 88 N BMSE A 89 1555 1555 1.33 LINK C LYS A 88 N CMSE A 89 1555 1555 1.33 LINK C AMSE A 89 N GLN A 90 1555 1555 1.33 LINK C BMSE A 89 N GLN A 90 1555 1555 1.33 LINK C CMSE A 89 N GLN A 90 1555 1555 1.33 LINK C GLU A 117 N BMSE A 118 1555 1555 1.33 LINK C GLU A 117 N AMSE A 118 1555 1555 1.33 LINK C BMSE A 118 N TRP A 119 1555 1555 1.33 LINK C AMSE A 118 N TRP A 119 1555 1555 1.34 LINK C SER A 121 N BMSE A 122 1555 1555 1.33 LINK C SER A 121 N AMSE A 122 1555 1555 1.33 SITE 1 AC1 1 LYS A 99 SITE 1 AC2 2 ARG A 59 HOH A 135 SITE 1 AC3 9 ARG A 65 PRO A 72 GLU A 80 ALA A 81 SITE 2 AC3 9 ALA A 84 HOH A 128 HOH A 142 HOH A 158 SITE 3 AC3 9 HOH A 162 CRYST1 119.666 18.705 37.992 90.00 93.36 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008357 0.000000 0.000491 0.00000 SCALE2 0.000000 0.053462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026367 0.00000