HEADER TRANSPORT PROTEIN 30-MAY-07 2Q3X TITLE THE RIM1ALPHA C2B DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C2B DOMAIN; COMPND 5 SYNONYM: RAB3-INTERACTING MOLECULE 1, RIM 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RIMS1, RIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KT KEYWDS C2 DOMAIN DIMER, NEUROTRANSMITTER RELEASE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GUAN,H.DAI,D.R.TOMCHICK,M.MACHIUS,T.C.SUDHOF,J.RIZO REVDAT 3 13-JUL-11 2Q3X 1 VERSN REVDAT 2 24-FEB-09 2Q3X 1 VERSN REVDAT 1 28-AUG-07 2Q3X 0 JRNL AUTH R.GUAN,H.DAI,D.R.TOMCHICK,I.DULUBOVA,M.MACHIUS,T.C.SUDHOF, JRNL AUTH 2 J.RIZO JRNL TITL CRYSTAL STRUCTURE OF THE RIM1ALPHA C(2)B DOMAIN AT 1.7 A JRNL TITL 2 RESOLUTION. JRNL REF BIOCHEMISTRY V. 46 8988 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17630786 JRNL DOI 10.1021/BI700698A REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.SCHOCH,P.E.CASTILLO,T.JO,K.MUKHERJEE,M.GEPPERT,Y.WANG, REMARK 1 AUTH 2 F.SCHMITZ,R.C.MALENKA,T.C.SUDHOF REMARK 1 TITL RIM1ALPHA FORMS A PROTEIN SCAFFOLD FOR REGULATING REMARK 1 TITL 2 NEUROTRANSMITTER RELEASE AT THE ACTIVE ZONE. REMARK 1 REF NATURE V. 415 321 2002 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.E.CASTILLO,S.SCHOCH,F.SCHMITZ,T.C.SUDHOF,R.C.MALENKA REMARK 1 TITL RIM1ALPHA IS REQUIRED FOR PRESYNAPTIC LONG-TERM REMARK 1 TITL 2 POTENTIATION. REMARK 1 REF NATURE V. 415 327 2002 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.M.POWELL,S.SCHOCH,L.MONTEGGIA,M.BARROT,M.F.MATOS, REMARK 1 AUTH 2 N.FELDMANN,T.C.SUDHOF,E.J.NESTLER REMARK 1 TITL THE PRESYNAPTIC ACTIVE ZONE PROTEIN RIM1ALPHA IS CRITICAL REMARK 1 TITL 2 FOR NORMAL LEARNING AND MEMORY. REMARK 1 REF NEURON V. 42 143 2004 REMARK 1 REFN ISSN 0896-6273 REMARK 1 REFERENCE 4 REMARK 1 AUTH P.S.KAESER,T.C.SUDHOF REMARK 1 TITL RIM FUNCTION IN SHORT- AND LONG-TERM SYNAPTIC PLASTICITY. REMARK 1 REF BIOCHEM.SOC.TRANS. V. 33 1345 2005 REMARK 1 REFN ISSN 0300-5127 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.RIZO,T.C.SUDHOF REMARK 1 TITL C2-DOMAINS, STRUCTURE AND FUNCTION OF A UNIVERSAL REMARK 1 TITL 2 CA2+-BINDING DOMAIN. REMARK 1 REF J.BIOL.CHEM. V. 273 15879 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2423 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2333 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3170 ; 1.811 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 3.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;34.565 ;24.651 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;13.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.497 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1970 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1014 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1534 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1453 ; 1.048 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2361 ; 1.889 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 910 ; 2.855 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 806 ; 4.525 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1455 A 1594 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4734 22.5023 53.4834 REMARK 3 T TENSOR REMARK 3 T11: -.0465 T22: -.0461 REMARK 3 T33: -.0376 T12: -.0083 REMARK 3 T13: -.0257 T23: .0270 REMARK 3 L TENSOR REMARK 3 L11: 1.6496 L22: .7556 REMARK 3 L33: 1.3636 L12: -.0946 REMARK 3 L13: .3637 L23: -.3948 REMARK 3 S TENSOR REMARK 3 S11: .0204 S12: -.0223 S13: .0614 REMARK 3 S21: .0161 S22: -.0201 S23: .0102 REMARK 3 S31: -.1021 S32: .0037 S33: -.0004 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1455 B 1594 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9527 15.1667 68.8056 REMARK 3 T TENSOR REMARK 3 T11: -.0189 T22: -.0665 REMARK 3 T33: -.0441 T12: -.0316 REMARK 3 T13: -.0523 T23: .0351 REMARK 3 L TENSOR REMARK 3 L11: 1.6457 L22: 1.0581 REMARK 3 L33: 1.5918 L12: .0343 REMARK 3 L13: .3176 L23: .0215 REMARK 3 S TENSOR REMARK 3 S11: .1329 S12: -.0638 S13: -.1566 REMARK 3 S21: .0751 S22: -.0522 S23: -.0922 REMARK 3 S31: .1482 S32: .0188 S33: -.0806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB043117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34669 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 26.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, 0.15 M NACL, 20% ETHYLENE GLYCOL, PH 3.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.39333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.78667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.78667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.39333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CONTENTS OF THE ASYMMETRIC UNIT IS A HOMODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 184 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1456 REMARK 465 LEU A 1457 REMARK 465 ALA A 1458 REMARK 465 THR A 1459 REMARK 465 PRO A 1460 REMARK 465 GLY A 1491 REMARK 465 SER A 1492 REMARK 465 LYS A 1493 REMARK 465 LEU A 1595 REMARK 465 THR A 1596 REMARK 465 ARG A 1597 REMARK 465 ARG A 1598 REMARK 465 ALA A 1599 REMARK 465 SER A 1600 REMARK 465 GLN A 1601 REMARK 465 SER A 1602 REMARK 465 SER A 1603 REMARK 465 LEU A 1604 REMARK 465 GLU A 1605 REMARK 465 SER A 1606 REMARK 465 SER A 1607 REMARK 465 SER A 1608 REMARK 465 GLY A 1609 REMARK 465 PRO A 1610 REMARK 465 PRO A 1611 REMARK 465 CYS A 1612 REMARK 465 ILE A 1613 REMARK 465 ARG A 1614 REMARK 465 SER A 1615 REMARK 465 GLY B 1491 REMARK 465 SER B 1492 REMARK 465 LYS B 1493 REMARK 465 GLY B 1551 REMARK 465 ARG B 1552 REMARK 465 MSE B 1553 REMARK 465 LEU B 1595 REMARK 465 THR B 1596 REMARK 465 ARG B 1597 REMARK 465 ARG B 1598 REMARK 465 ALA B 1599 REMARK 465 SER B 1600 REMARK 465 GLN B 1601 REMARK 465 SER B 1602 REMARK 465 SER B 1603 REMARK 465 LEU B 1604 REMARK 465 GLU B 1605 REMARK 465 SER B 1606 REMARK 465 SER B 1607 REMARK 465 SER B 1608 REMARK 465 GLY B 1609 REMARK 465 PRO B 1610 REMARK 465 PRO B 1611 REMARK 465 CYS B 1612 REMARK 465 ILE B 1613 REMARK 465 ARG B 1614 REMARK 465 SER B 1615 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR B 1591 N CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1554 73.61 -162.24 REMARK 500 ALA B1458 -2.39 75.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 186 DISTANCE = 5.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 DBREF 2Q3X A 1447 1615 UNP Q9JIR4 RIMS1_RAT 1447 1615 DBREF 2Q3X B 1447 1615 UNP Q9JIR4 RIMS1_RAT 1447 1615 SEQADV 2Q3X SER A 1445 UNP Q9JIR4 EXPRESSION TAG SEQADV 2Q3X PRO A 1446 UNP Q9JIR4 EXPRESSION TAG SEQADV 2Q3X MSE A 1462 UNP Q9JIR4 MET 1462 MODIFIED RESIDUE SEQADV 2Q3X MSE A 1469 UNP Q9JIR4 MET 1469 MODIFIED RESIDUE SEQADV 2Q3X MSE A 1553 UNP Q9JIR4 MET 1553 MODIFIED RESIDUE SEQADV 2Q3X MSE A 1559 UNP Q9JIR4 MET 1559 MODIFIED RESIDUE SEQADV 2Q3X MSE A 1574 UNP Q9JIR4 MET 1574 MODIFIED RESIDUE SEQADV 2Q3X SER B 1445 UNP Q9JIR4 EXPRESSION TAG SEQADV 2Q3X PRO B 1446 UNP Q9JIR4 EXPRESSION TAG SEQADV 2Q3X MSE B 1462 UNP Q9JIR4 MET 1462 MODIFIED RESIDUE SEQADV 2Q3X MSE B 1469 UNP Q9JIR4 MET 1469 MODIFIED RESIDUE SEQADV 2Q3X MSE B 1553 UNP Q9JIR4 MET 1553 MODIFIED RESIDUE SEQADV 2Q3X MSE B 1559 UNP Q9JIR4 MET 1559 MODIFIED RESIDUE SEQADV 2Q3X MSE B 1574 UNP Q9JIR4 MET 1574 MODIFIED RESIDUE SEQRES 1 A 171 SER PRO GLY PRO ALA GLN LEU VAL GLY ARG GLN THR LEU SEQRES 2 A 171 ALA THR PRO ALA MSE GLY ASP ILE GLN ILE GLY MSE GLU SEQRES 3 A 171 ASP LYS LYS GLY GLN LEU GLU VAL GLU VAL ILE ARG ALA SEQRES 4 A 171 ARG SER LEU THR GLN LYS PRO GLY SER LYS SER THR PRO SEQRES 5 A 171 ALA PRO TYR VAL LYS VAL TYR LEU LEU GLU ASN GLY ALA SEQRES 6 A 171 CYS ILE ALA LYS LYS LYS THR ARG ILE ALA ARG LYS THR SEQRES 7 A 171 LEU ASP PRO LEU TYR GLN GLN SER LEU VAL PHE ASP GLU SEQRES 8 A 171 SER PRO GLN GLY LYS VAL LEU GLN VAL ILE VAL TRP GLY SEQRES 9 A 171 ASP TYR GLY ARG MSE ASP HIS LYS CYS PHE MSE GLY VAL SEQRES 10 A 171 ALA GLN ILE LEU LEU GLU GLU LEU ASP LEU SER SER MSE SEQRES 11 A 171 VAL ILE GLY TRP TYR LYS LEU PHE PRO PRO SER SER LEU SEQRES 12 A 171 VAL ASP PRO THR LEU ALA PRO LEU THR ARG ARG ALA SER SEQRES 13 A 171 GLN SER SER LEU GLU SER SER SER GLY PRO PRO CYS ILE SEQRES 14 A 171 ARG SER SEQRES 1 B 171 SER PRO GLY PRO ALA GLN LEU VAL GLY ARG GLN THR LEU SEQRES 2 B 171 ALA THR PRO ALA MSE GLY ASP ILE GLN ILE GLY MSE GLU SEQRES 3 B 171 ASP LYS LYS GLY GLN LEU GLU VAL GLU VAL ILE ARG ALA SEQRES 4 B 171 ARG SER LEU THR GLN LYS PRO GLY SER LYS SER THR PRO SEQRES 5 B 171 ALA PRO TYR VAL LYS VAL TYR LEU LEU GLU ASN GLY ALA SEQRES 6 B 171 CYS ILE ALA LYS LYS LYS THR ARG ILE ALA ARG LYS THR SEQRES 7 B 171 LEU ASP PRO LEU TYR GLN GLN SER LEU VAL PHE ASP GLU SEQRES 8 B 171 SER PRO GLN GLY LYS VAL LEU GLN VAL ILE VAL TRP GLY SEQRES 9 B 171 ASP TYR GLY ARG MSE ASP HIS LYS CYS PHE MSE GLY VAL SEQRES 10 B 171 ALA GLN ILE LEU LEU GLU GLU LEU ASP LEU SER SER MSE SEQRES 11 B 171 VAL ILE GLY TRP TYR LYS LEU PHE PRO PRO SER SER LEU SEQRES 12 B 171 VAL ASP PRO THR LEU ALA PRO LEU THR ARG ARG ALA SER SEQRES 13 B 171 GLN SER SER LEU GLU SER SER SER GLY PRO PRO CYS ILE SEQRES 14 B 171 ARG SER MODRES 2Q3X MSE A 1462 MET SELENOMETHIONINE MODRES 2Q3X MSE A 1469 MET SELENOMETHIONINE MODRES 2Q3X MSE A 1553 MET SELENOMETHIONINE MODRES 2Q3X MSE A 1559 MET SELENOMETHIONINE MODRES 2Q3X MSE A 1574 MET SELENOMETHIONINE MODRES 2Q3X MSE B 1462 MET SELENOMETHIONINE MODRES 2Q3X MSE B 1469 MET SELENOMETHIONINE MODRES 2Q3X MSE B 1559 MET SELENOMETHIONINE MODRES 2Q3X MSE B 1574 MET SELENOMETHIONINE HET MSE A1462 8 HET MSE A1469 8 HET MSE A1553 8 HET MSE A1559 8 HET MSE A1574 16 HET MSE B1462 8 HET MSE B1469 8 HET MSE B1559 8 HET MSE B1574 8 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 204 5 HET SO4 A 206 5 HET SO4 A 207 5 HET CL A 402 1 HET CL A 403 1 HET SO4 B 203 5 HET SO4 B 205 5 HET NA B 301 1 HET CL B 401 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 SO4 7(O4 S 2-) FORMUL 8 CL 3(CL 1-) FORMUL 12 NA NA 1+ FORMUL 14 HOH *189(H2 O) HELIX 1 1 LEU A 1566 LEU A 1569 5 4 HELIX 2 2 PRO A 1583 VAL A 1588 5 6 HELIX 3 3 GLU B 1567 LEU B 1569 5 3 HELIX 4 4 PRO B 1583 VAL B 1588 5 6 SHEET 1 A 6 ALA A1509 LYS A1515 0 SHEET 2 A 6 ALA A1497 GLU A1506 -1 N VAL A1502 O LYS A1514 SHEET 3 A 6 LYS A1540 ASP A1549 -1 O VAL A1541 N LEU A1505 SHEET 4 A 6 CYS A1557 ILE A1564 -1 O CYS A1557 N GLY A1548 SHEET 5 A 6 GLN A1450 GLY A1453 -1 N LEU A1451 O GLN A1563 SHEET 6 A 6 PRO A1590 LEU A1592 -1 O THR A1591 N VAL A1452 SHEET 1 B 4 LEU A1526 VAL A1532 0 SHEET 2 B 4 GLN A1475 ARG A1484 -1 N VAL A1480 O GLN A1529 SHEET 3 B 4 ASP A1464 LYS A1472 -1 N LYS A1472 O GLN A1475 SHEET 4 B 4 VAL A1575 LYS A1580 -1 O TYR A1579 N ILE A1465 SHEET 1 C 6 ALA B1509 LYS B1515 0 SHEET 2 C 6 ALA B1497 GLU B1506 -1 N VAL B1502 O LYS B1514 SHEET 3 C 6 LYS B1540 ASP B1549 -1 O VAL B1541 N LEU B1505 SHEET 4 C 6 CYS B1557 LEU B1565 -1 O CYS B1557 N GLY B1548 SHEET 5 C 6 GLN B1450 GLY B1453 -1 N LEU B1451 O GLN B1563 SHEET 6 C 6 PRO B1590 LEU B1592 -1 O THR B1591 N VAL B1452 SHEET 1 D 4 LEU B1526 VAL B1532 0 SHEET 2 D 4 GLN B1475 ARG B1484 -1 N VAL B1478 O LEU B1531 SHEET 3 D 4 ASP B1464 LYS B1472 -1 N GLU B1470 O GLU B1477 SHEET 4 D 4 VAL B1575 LYS B1580 -1 O TYR B1579 N ILE B1465 LINK C ALA A1461 N MSE A1462 1555 1555 1.33 LINK C MSE A1462 N GLY A1463 1555 1555 1.33 LINK C GLY A1468 N MSE A1469 1555 1555 1.33 LINK C MSE A1469 N GLU A1470 1555 1555 1.32 LINK C ARG A1552 N MSE A1553 1555 1555 1.33 LINK C MSE A1553 N ASP A1554 1555 1555 1.35 LINK C PHE A1558 N MSE A1559 1555 1555 1.34 LINK C MSE A1559 N GLY A1560 1555 1555 1.33 LINK C SER A1573 N AMSE A1574 1555 1555 1.33 LINK C SER A1573 N BMSE A1574 1555 1555 1.35 LINK C BMSE A1574 N VAL A1575 1555 1555 1.35 LINK C AMSE A1574 N VAL A1575 1555 1555 1.33 LINK C ALA B1461 N MSE B1462 1555 1555 1.34 LINK C MSE B1462 N GLY B1463 1555 1555 1.33 LINK C GLY B1468 N MSE B1469 1555 1555 1.33 LINK C MSE B1469 N GLU B1470 1555 1555 1.33 LINK C PHE B1558 N MSE B1559 1555 1555 1.33 LINK C MSE B1559 N GLY B1560 1555 1555 1.34 LINK C SER B1573 N MSE B1574 1555 1555 1.34 LINK C MSE B1574 N VAL B1575 1555 1555 1.33 SITE 1 AC1 8 HOH A 23 LYS A1501 TYR A1503 LYS A1513 SITE 2 AC1 8 LYS A1556 ARG B1454 GLN B1455 ASP B1589 SITE 1 AC2 8 HOH A 138 ARG A1454 GLN A1455 ASP A1589 SITE 2 AC2 8 LYS B1501 TYR B1503 LYS B1513 LYS B1556 SITE 1 AC3 4 TYR A1499 LYS A1501 LYS A1515 LYS A1556 SITE 1 AC4 3 ARG A1482 ARG A1484 GLN B1538 SITE 1 AC5 5 HOH A 58 HOH A 164 ARG A1520 THR A1522 SITE 2 AC5 5 GLN A1538 SITE 1 AC6 2 PRO A1584 SER A1585 SITE 1 AC7 2 SER A1536 LYS A1540 SITE 1 AC8 9 HOH A 1 GLN A1466 ARG A1482 TRP A1578 SITE 2 AC8 9 HOH B 77 HOH B 183 GLU B1535 SER B1536 SITE 3 AC8 9 LYS B1540 SITE 1 AC9 4 TYR B1499 LYS B1501 LYS B1515 LYS B1556 SITE 1 BC1 3 HOH A 90 ASP B1534 GLU B1535 SITE 1 BC2 3 HOH B 113 ALA B1458 LYS B1580 CRYST1 62.037 62.037 145.180 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016119 0.009307 0.000000 0.00000 SCALE2 0.000000 0.018613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006888 0.00000