data_2Q4Y # _entry.id 2Q4Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Q4Y pdb_00002q4y 10.2210/pdb2q4y/pdb RCSB RCSB043154 ? ? WWPDB D_1000043154 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB GO.6042 . unspecified PDB 2IL4 'Original refinement based on same data and R-free set.' re-refinement PDB 1XMT 'X-ray structure of At1g77540' unspecified PDB 2EVN 'NMR solution structure of At1g77540' unspecified # _pdbx_database_status.entry_id 2Q4Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-31 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Levin, E.J.' 1 'Kondrashov, D.A.' 2 'Wesenberg, G.E.' 3 'Phillips Jr., G.N.' 4 'Center for Eukaryotic Structural Genomics (CESG)' 5 # _citation.id primary _citation.title 'Ensemble refinement of protein crystal structures: validation and application.' _citation.journal_abbrev Structure _citation.journal_volume 15 _citation.page_first 1040 _citation.page_last 1052 _citation.year 2007 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17850744 _citation.pdbx_database_id_DOI 10.1016/j.str.2007.06.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Levin, E.J.' 1 ? primary 'Kondrashov, D.A.' 2 ? primary 'Wesenberg, G.E.' 3 ? primary 'Phillips, G.N.' 4 ? # _cell.entry_id 2Q4Y _cell.length_a 27.905 _cell.length_b 63.941 _cell.length_c 29.525 _cell.angle_alpha 90.000 _cell.angle_beta 90.860 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Q4Y _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 4 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein At1g77540' 11752.433 1 ? ? 'Residues 12-114' ? 2 non-polymer syn 'COENZYME A' 767.534 1 ? ? ? ? 3 water nat water 18.015 68 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MATEPPKIVWNEGKRRFETEDHEAFIEYKMRNNGKVMDLVHTYVPSFKRGLGLASHLCVAAFEHASSHSISIIPSCSYVS DTFLPRNPSWKPLIHSEVFKSSI ; _entity_poly.pdbx_seq_one_letter_code_can ;MATEPPKIVWNEGKRRFETEDHEAFIEYKMRNNGKVMDLVHTYVPSFKRGLGLASHLCVAAFEHASSHSISIIPSCSYVS DTFLPRNPSWKPLIHSEVFKSSI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GO.6042 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 THR n 1 4 GLU n 1 5 PRO n 1 6 PRO n 1 7 LYS n 1 8 ILE n 1 9 VAL n 1 10 TRP n 1 11 ASN n 1 12 GLU n 1 13 GLY n 1 14 LYS n 1 15 ARG n 1 16 ARG n 1 17 PHE n 1 18 GLU n 1 19 THR n 1 20 GLU n 1 21 ASP n 1 22 HIS n 1 23 GLU n 1 24 ALA n 1 25 PHE n 1 26 ILE n 1 27 GLU n 1 28 TYR n 1 29 LYS n 1 30 MET n 1 31 ARG n 1 32 ASN n 1 33 ASN n 1 34 GLY n 1 35 LYS n 1 36 VAL n 1 37 MET n 1 38 ASP n 1 39 LEU n 1 40 VAL n 1 41 HIS n 1 42 THR n 1 43 TYR n 1 44 VAL n 1 45 PRO n 1 46 SER n 1 47 PHE n 1 48 LYS n 1 49 ARG n 1 50 GLY n 1 51 LEU n 1 52 GLY n 1 53 LEU n 1 54 ALA n 1 55 SER n 1 56 HIS n 1 57 LEU n 1 58 CYS n 1 59 VAL n 1 60 ALA n 1 61 ALA n 1 62 PHE n 1 63 GLU n 1 64 HIS n 1 65 ALA n 1 66 SER n 1 67 SER n 1 68 HIS n 1 69 SER n 1 70 ILE n 1 71 SER n 1 72 ILE n 1 73 ILE n 1 74 PRO n 1 75 SER n 1 76 CYS n 1 77 SER n 1 78 TYR n 1 79 VAL n 1 80 SER n 1 81 ASP n 1 82 THR n 1 83 PHE n 1 84 LEU n 1 85 PRO n 1 86 ARG n 1 87 ASN n 1 88 PRO n 1 89 SER n 1 90 TRP n 1 91 LYS n 1 92 PRO n 1 93 LEU n 1 94 ILE n 1 95 HIS n 1 96 SER n 1 97 GLU n 1 98 VAL n 1 99 PHE n 1 100 LYS n 1 101 SER n 1 102 SER n 1 103 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'thale cress' _entity_src_gen.gene_src_genus Arabidopsis _entity_src_gen.pdbx_gene_src_gene 'At1g77540, T5M16.13' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'cv. Columbia' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL834(DE3) PLACI+RARE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PVP13-GW _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y1754_ARATH _struct_ref.pdbx_db_accession Q9CAQ2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MATEPPKIVWNEGKRRFETEDHEAFIEYKMRNNGKVMDLVHTYVPSFKRGLGLASHLCVAAFEHASSHSISIIPSCSYVS DTFLPRNPSWKPLIHSEVFKSSI ; _struct_ref.pdbx_align_begin 12 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Q4Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 103 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9CAQ2 _struct_ref_seq.db_align_beg 12 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 114 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 103 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 COA non-polymer . 'COENZYME A' ? 'C21 H36 N7 O16 P3 S' 767.534 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number ? _exptl.entry_id 2Q4Y _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.08 _exptl_crystal.description 'AUTHOR USED THE SF DATA FROM ENTRY 2IL4.' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 2Q4Y _refine.pdbx_starting_model 'PDB entry 2IL4' _refine.pdbx_method_to_determine_struct 'Re-refinement using ensemble model' _refine.pdbx_stereochemistry_target_values 'maximum likelihood using amplitudes' _refine.ls_d_res_high 2.060 _refine.ls_d_res_low 31.970 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF 607463.438 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 99.200 _refine.ls_number_reflns_obs 6424 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;This PDB entry is a re-refinement using an ensemble model of the previously deposited single-conformer structure 2il4 and the first data set in the deposited structure factor file for 2il4 along with the R-free set defined therein. The coordinates were generated by an automated protocol from an initial model consisting of 4 identical copies of the protein and non-water hetero-atoms assigned fractional occupancies adding up to one, and a single copy of the solvent molecules. Refinement was carried out with all the conformers present simultaneously and with the potential energy terms corresponding to interactions between the different conformers excluded. The helix and sheet records were calculated using coordinates from the first conformer only. The structure visualization program PYMOL is well-suited for directly viewing the ensemble model presented in this PDB file. ; _refine.ls_R_factor_R_work 0.171 _refine.ls_R_factor_R_free 0.225 _refine.ls_percent_reflns_R_free 5.600 _refine.ls_number_reflns_R_free 358 _refine.ls_R_factor_R_free_error 0.012 _refine.B_iso_mean 29.600 _refine.solvent_model_param_bsol 72.641 _refine.solvent_model_param_ksol 0.405 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 0.000 _refine.aniso_B[2][2] 0.000 _refine.aniso_B[3][3] 0.000 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.171 _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2Q4Y _refine_analyze.Luzzati_coordinate_error_obs 0.180 _refine_analyze.Luzzati_sigma_a_obs 0.100 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.280 _refine_analyze.Luzzati_sigma_a_free 0.170 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 735 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 851 _refine_hist.d_res_high 2.060 _refine_hist.d_res_low 31.970 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.046 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 3.600 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 23.400 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 2.370 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.610 1.500 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.530 2.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.580 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.480 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 6 2.06 2.19 1077 1065 1009 98.9 0.196 0.249 0.033 56 5.3 . . 'X-RAY DIFFRACTION' 6 2.19 2.36 1088 1086 1030 99.8 0.169 0.237 0.032 56 5.2 . . 'X-RAY DIFFRACTION' 6 2.36 2.60 1063 1060 993 99.7 0.135 0.226 0.028 67 6.3 . . 'X-RAY DIFFRACTION' 6 2.60 2.97 1072 1070 1019 99.8 0.176 0.327 0.046 51 4.8 . . 'X-RAY DIFFRACTION' 6 2.97 3.74 1088 1077 1018 99.0 0.183 0.264 0.034 59 5.5 . . 'X-RAY DIFFRACTION' 6 3.74 31.97 1093 1066 997 97.5 0.168 0.171 0.021 69 6.5 . . 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 coa_xplor_par.txt ? 'X-RAY DIFFRACTION' # _struct.entry_id 2Q4Y _struct.title 'Ensemble refinement of the protein crystal structure of At1g77540-coenzyme A complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Ensemble Refinement, Refinement Methodology Development, CoA, Coenzyme-A, COG2388 Family, acetyltransferase, At1g77540, Structural Genomics, Protein Structure Initiative, PSI, Center for Eukaryotic Structural Genomics, CESG, TRANSFERASE ; _struct_keywords.entry_id 2Q4Y _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 45 ? ARG A 49 ? PRO A 45 ARG A 49 5 ? 5 HELX_P HELX_P2 2 GLY A 52 ? SER A 67 ? GLY A 52 SER A 67 1 ? 16 HELX_P HELX_P3 3 CYS A 76 ? THR A 82 ? CYS A 76 THR A 82 1 ? 7 HELX_P HELX_P4 4 THR A 82 ? ASN A 87 ? THR A 82 ASN A 87 1 ? 6 HELX_P HELX_P5 5 PRO A 88 ? ILE A 94 ? PRO A 88 ILE A 94 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 5 A . ? PRO 5 A PRO 6 A ? PRO 6 A 1 -10.40 2 PRO 5 A . ? PRO 5 A PRO 6 A ? PRO 6 A 2 7.35 3 PRO 5 A . ? PRO 5 A PRO 6 A ? PRO 6 A 3 -0.01 4 PRO 5 A . ? PRO 5 A PRO 6 A ? PRO 6 A 4 0.55 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 8 ? ASN A 11 ? ILE A 8 ASN A 11 A 2 ARG A 16 ? THR A 19 ? ARG A 16 THR A 19 A 3 PHE A 25 ? ARG A 31 ? PHE A 25 ARG A 31 A 4 VAL A 36 ? TYR A 43 ? VAL A 36 TYR A 43 A 5 SER A 71 ? ILE A 73 ? SER A 71 ILE A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 11 ? N ASN A 11 O ARG A 16 ? O ARG A 16 A 2 3 N PHE A 17 ? N PHE A 17 O ILE A 26 ? O ILE A 26 A 3 4 N PHE A 25 ? N PHE A 25 O TYR A 43 ? O TYR A 43 A 4 5 N LEU A 39 ? N LEU A 39 O ILE A 73 ? O ILE A 73 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id COA _struct_site.pdbx_auth_seq_id 104 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 21 _struct_site.details 'BINDING SITE FOR RESIDUE COA A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 HIS A 22 ? HIS A 22 . ? 1_554 ? 2 AC1 21 THR A 42 ? THR A 42 . ? 1_555 ? 3 AC1 21 TYR A 43 ? TYR A 43 . ? 1_555 ? 4 AC1 21 VAL A 44 ? VAL A 44 . ? 1_555 ? 5 AC1 21 ARG A 49 ? ARG A 49 . ? 1_555 ? 6 AC1 21 GLY A 50 ? GLY A 50 . ? 1_555 ? 7 AC1 21 LEU A 51 ? LEU A 51 . ? 1_555 ? 8 AC1 21 GLY A 52 ? GLY A 52 . ? 1_555 ? 9 AC1 21 LEU A 53 ? LEU A 53 . ? 1_555 ? 10 AC1 21 ALA A 54 ? ALA A 54 . ? 1_555 ? 11 AC1 21 SER A 77 ? SER A 77 . ? 1_555 ? 12 AC1 21 TYR A 78 ? TYR A 78 . ? 1_555 ? 13 AC1 21 THR A 82 ? THR A 82 . ? 1_555 ? 14 AC1 21 ARG A 86 ? ARG A 86 . ? 1_555 ? 15 AC1 21 SER A 89 ? SER A 89 . ? 1_455 ? 16 AC1 21 TRP A 90 ? TRP A 90 . ? 1_455 ? 17 AC1 21 HOH C . ? HOH A 105 . ? 1_555 ? 18 AC1 21 HOH C . ? HOH A 120 . ? 1_555 ? 19 AC1 21 HOH C . ? HOH A 144 . ? 1_555 ? 20 AC1 21 HOH C . ? HOH A 156 . ? 1_554 ? 21 AC1 21 HOH C . ? HOH A 167 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Q4Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2Q4Y _atom_sites.fract_transf_matrix[1][1] 0.035836 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000538 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015639 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033873 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 GLU 4 4 ? ? ? A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 TRP 10 10 10 TRP TRP A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 MET 37 37 37 MET MET A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 TRP 90 90 90 TRP TRP A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 SER 96 96 ? ? ? A . n A 1 97 GLU 97 97 ? ? ? A . n A 1 98 VAL 98 98 ? ? ? A . n A 1 99 PHE 99 99 ? ? ? A . n A 1 100 LYS 100 100 ? ? ? A . n A 1 101 SER 101 101 ? ? ? A . n A 1 102 SER 102 102 ? ? ? A . n A 1 103 ILE 103 103 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Center for Eukaryotic Structural Genomics' _pdbx_SG_project.initial_of_center CESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA 1 104 101 COA COA A . C 3 HOH 1 105 1 HOH HOH A . C 3 HOH 2 106 2 HOH HOH A . C 3 HOH 3 107 3 HOH HOH A . C 3 HOH 4 108 4 HOH HOH A . C 3 HOH 5 109 5 HOH HOH A . C 3 HOH 6 110 6 HOH HOH A . C 3 HOH 7 111 7 HOH HOH A . C 3 HOH 8 112 8 HOH HOH A . C 3 HOH 9 113 9 HOH HOH A . C 3 HOH 10 114 10 HOH HOH A . C 3 HOH 11 115 11 HOH HOH A . C 3 HOH 12 116 12 HOH HOH A . C 3 HOH 13 117 13 HOH HOH A . C 3 HOH 14 118 14 HOH HOH A . C 3 HOH 15 119 15 HOH HOH A . C 3 HOH 16 120 16 HOH HOH A . C 3 HOH 17 121 17 HOH HOH A . C 3 HOH 18 122 18 HOH HOH A . C 3 HOH 19 123 19 HOH HOH A . C 3 HOH 20 124 20 HOH HOH A . C 3 HOH 21 125 22 HOH HOH A . C 3 HOH 22 126 23 HOH HOH A . C 3 HOH 23 127 24 HOH HOH A . C 3 HOH 24 128 25 HOH HOH A . C 3 HOH 25 129 26 HOH HOH A . C 3 HOH 26 130 27 HOH HOH A . C 3 HOH 27 131 28 HOH HOH A . C 3 HOH 28 132 29 HOH HOH A . C 3 HOH 29 133 30 HOH HOH A . C 3 HOH 30 134 31 HOH HOH A . C 3 HOH 31 135 32 HOH HOH A . C 3 HOH 32 136 33 HOH HOH A . C 3 HOH 33 137 34 HOH HOH A . C 3 HOH 34 138 35 HOH HOH A . C 3 HOH 35 139 36 HOH HOH A . C 3 HOH 36 140 37 HOH HOH A . C 3 HOH 37 141 38 HOH HOH A . C 3 HOH 38 142 39 HOH HOH A . C 3 HOH 39 143 40 HOH HOH A . C 3 HOH 40 144 41 HOH HOH A . C 3 HOH 41 145 42 HOH HOH A . C 3 HOH 42 146 43 HOH HOH A . C 3 HOH 43 147 44 HOH HOH A . C 3 HOH 44 148 45 HOH HOH A . C 3 HOH 45 149 46 HOH HOH A . C 3 HOH 46 150 47 HOH HOH A . C 3 HOH 47 151 48 HOH HOH A . C 3 HOH 48 152 49 HOH HOH A . C 3 HOH 49 153 50 HOH HOH A . C 3 HOH 50 154 51 HOH HOH A . C 3 HOH 51 155 52 HOH HOH A . C 3 HOH 52 156 53 HOH HOH A . C 3 HOH 53 157 54 HOH HOH A . C 3 HOH 54 158 55 HOH HOH A . C 3 HOH 55 159 56 HOH HOH A . C 3 HOH 56 160 57 HOH HOH A . C 3 HOH 57 161 58 HOH HOH A . C 3 HOH 58 162 59 HOH HOH A . C 3 HOH 59 163 60 HOH HOH A . C 3 HOH 60 164 61 HOH HOH A . C 3 HOH 61 165 62 HOH HOH A . C 3 HOH 62 166 63 HOH HOH A . C 3 HOH 63 167 64 HOH HOH A . C 3 HOH 64 168 65 HOH HOH A . C 3 HOH 65 169 66 HOH HOH A . C 3 HOH 66 170 67 HOH HOH A . C 3 HOH 67 171 68 HOH HOH A . C 3 HOH 68 172 69 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-19 2 'Structure model' 1 1 2007-09-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-08-10 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 CNS 1.1 ? ? ? ? phasing ? ? ? 3 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A VAL 9 ? ? CG1 A VAL 9 ? ? 1.656 1.524 0.132 0.021 N 2 1 CB A GLU 12 ? ? CG A GLU 12 ? ? 1.354 1.517 -0.163 0.019 N 3 1 CB A GLU 18 ? ? CG A GLU 18 ? ? 1.632 1.517 0.115 0.019 N 4 1 CD A GLU 23 ? ? OE1 A GLU 23 ? ? 1.175 1.252 -0.077 0.011 N 5 1 CB A GLU 27 ? ? CG A GLU 27 ? ? 1.648 1.517 0.131 0.019 N 6 1 CG A GLU 27 ? ? CD A GLU 27 ? ? 1.608 1.515 0.093 0.015 N 7 1 CB A TYR 43 ? ? CG A TYR 43 ? ? 1.627 1.512 0.115 0.015 N 8 1 CE2 A TYR 43 ? ? CD2 A TYR 43 ? ? 1.503 1.389 0.114 0.015 N 9 1 CB A PHE 62 ? ? CG A PHE 62 ? ? 1.615 1.509 0.106 0.017 N 10 2 CG A ARG 16 ? ? CD A ARG 16 ? ? 1.720 1.515 0.205 0.025 N 11 2 CE1 A PHE 17 ? ? CZ A PHE 17 ? ? 1.506 1.369 0.137 0.019 N 12 2 CG A GLU 23 ? ? CD A GLU 23 ? ? 1.617 1.515 0.102 0.015 N 13 2 CG A GLU 27 ? ? CD A GLU 27 ? ? 1.614 1.515 0.099 0.015 N 14 2 CD1 A TYR 28 ? ? CE1 A TYR 28 ? ? 1.542 1.389 0.153 0.015 N 15 2 CB A ASN 32 ? ? CG A ASN 32 ? ? 1.647 1.506 0.141 0.023 N 16 2 CB A SER 77 ? ? OG A SER 77 ? ? 1.303 1.418 -0.115 0.013 N 17 2 CB A VAL 79 ? ? CG2 A VAL 79 ? ? 1.708 1.524 0.184 0.021 N 18 2 CE2 A PHE 83 ? ? CD2 A PHE 83 ? ? 1.557 1.388 0.169 0.020 N 19 3 CD A LYS 35 ? ? CE A LYS 35 ? ? 1.692 1.508 0.184 0.025 N 20 3 CB A SER 55 ? ? OG A SER 55 ? ? 1.323 1.418 -0.095 0.013 N 21 3 CB A CYS 58 ? ? SG A CYS 58 ? ? 1.644 1.812 -0.168 0.016 N 22 3 CD1 A TYR 78 ? ? CE1 A TYR 78 ? ? 1.511 1.389 0.122 0.015 N 23 3 CB A VAL 79 ? ? CG2 A VAL 79 ? ? 1.654 1.524 0.130 0.021 N 24 4 CB A PHE 25 ? ? CG A PHE 25 ? ? 1.639 1.509 0.130 0.017 N 25 4 CE A LYS 29 ? ? NZ A LYS 29 ? ? 1.667 1.486 0.181 0.025 N 26 4 CB A VAL 36 ? ? CG1 A VAL 36 ? ? 1.659 1.524 0.135 0.021 N 27 4 CA A ALA 60 ? ? CB A ALA 60 ? ? 1.648 1.520 0.128 0.021 N 28 4 CB A CYS 76 ? ? SG A CYS 76 ? ? 1.656 1.812 -0.156 0.016 N 29 4 CB A VAL 79 ? ? CG2 A VAL 79 ? ? 1.698 1.524 0.174 0.021 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PHE 17 ? ? CA A PHE 17 ? ? C A PHE 17 ? ? 91.69 111.00 -19.31 2.70 N 2 1 NE A ARG 86 ? ? CZ A ARG 86 ? ? NH1 A ARG 86 ? ? 116.21 120.30 -4.09 0.50 N 3 2 NE A ARG 86 ? ? CZ A ARG 86 ? ? NH2 A ARG 86 ? ? 115.54 120.30 -4.76 0.50 N 4 3 NE A ARG 31 ? ? CZ A ARG 31 ? ? NH2 A ARG 31 ? ? 117.01 120.30 -3.29 0.50 N 5 3 CB A CYS 58 ? ? CA A CYS 58 ? ? C A CYS 58 ? ? 118.87 111.50 7.37 1.20 N 6 3 CB A ARG 86 ? ? CG A ARG 86 ? ? CD A ARG 86 ? ? 95.64 111.60 -15.96 2.60 N 7 4 CD A LYS 29 ? ? CE A LYS 29 ? ? NZ A LYS 29 ? ? 125.97 111.70 14.27 2.30 N 8 4 CD A LYS 35 ? ? CE A LYS 35 ? ? NZ A LYS 35 ? ? 126.26 111.70 14.56 2.30 N 9 4 NE A ARG 49 ? ? CZ A ARG 49 ? ? NH1 A ARG 49 ? ? 116.43 120.30 -3.87 0.50 N 10 4 NE A ARG 49 ? ? CZ A ARG 49 ? ? NH2 A ARG 49 ? ? 123.52 120.30 3.22 0.50 N 11 4 NE A ARG 86 ? ? CZ A ARG 86 ? ? NH1 A ARG 86 ? ? 112.13 120.30 -8.17 0.50 N 12 4 NE A ARG 86 ? ? CZ A ARG 86 ? ? NH2 A ARG 86 ? ? 124.68 120.30 4.38 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 6 ? ? -92.64 -125.85 2 1 GLU A 20 ? ? -39.65 -26.20 3 1 HIS A 22 ? ? 70.90 -2.78 4 1 SER A 46 ? ? -33.45 -88.10 5 1 PHE A 47 ? ? -31.54 -26.42 6 1 CYS A 76 ? ? -33.68 122.45 7 1 THR A 82 ? ? -130.50 -53.21 8 2 HIS A 22 ? ? 57.05 16.20 9 2 SER A 69 ? ? 76.03 34.79 10 2 THR A 82 ? ? -132.07 -34.68 11 3 ASN A 33 ? ? 39.01 53.43 12 3 PHE A 47 ? ? -87.26 45.23 13 3 LYS A 48 ? ? -161.53 8.56 14 3 PRO A 74 ? ? -92.11 57.75 15 3 ASN A 87 ? ? -141.14 58.86 16 3 SER A 89 ? ? -65.35 2.78 17 4 HIS A 41 ? ? -170.19 122.05 18 4 SER A 69 ? ? 36.34 57.09 19 4 ASN A 87 ? ? -150.63 59.42 20 4 SER A 89 ? ? -67.65 10.25 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 HIS A 64 ? ? 0.093 'SIDE CHAIN' 2 3 TYR A 28 ? ? 0.092 'SIDE CHAIN' 3 3 TYR A 78 ? ? 0.072 'SIDE CHAIN' 4 4 TYR A 28 ? ? 0.072 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A GLU 4 ? A GLU 4 5 1 Y 1 A SER 96 ? A SER 96 6 1 Y 1 A GLU 97 ? A GLU 97 7 1 Y 1 A VAL 98 ? A VAL 98 8 1 Y 1 A PHE 99 ? A PHE 99 9 1 Y 1 A LYS 100 ? A LYS 100 10 1 Y 1 A SER 101 ? A SER 101 11 1 Y 1 A SER 102 ? A SER 102 12 1 Y 1 A ILE 103 ? A ILE 103 13 2 Y 1 A MET 1 ? A MET 1 14 2 Y 1 A ALA 2 ? A ALA 2 15 2 Y 1 A THR 3 ? A THR 3 16 2 Y 1 A GLU 4 ? A GLU 4 17 2 Y 1 A SER 96 ? A SER 96 18 2 Y 1 A GLU 97 ? A GLU 97 19 2 Y 1 A VAL 98 ? A VAL 98 20 2 Y 1 A PHE 99 ? A PHE 99 21 2 Y 1 A LYS 100 ? A LYS 100 22 2 Y 1 A SER 101 ? A SER 101 23 2 Y 1 A SER 102 ? A SER 102 24 2 Y 1 A ILE 103 ? A ILE 103 25 3 Y 1 A MET 1 ? A MET 1 26 3 Y 1 A ALA 2 ? A ALA 2 27 3 Y 1 A THR 3 ? A THR 3 28 3 Y 1 A GLU 4 ? A GLU 4 29 3 Y 1 A SER 96 ? A SER 96 30 3 Y 1 A GLU 97 ? A GLU 97 31 3 Y 1 A VAL 98 ? A VAL 98 32 3 Y 1 A PHE 99 ? A PHE 99 33 3 Y 1 A LYS 100 ? A LYS 100 34 3 Y 1 A SER 101 ? A SER 101 35 3 Y 1 A SER 102 ? A SER 102 36 3 Y 1 A ILE 103 ? A ILE 103 37 4 Y 1 A MET 1 ? A MET 1 38 4 Y 1 A ALA 2 ? A ALA 2 39 4 Y 1 A THR 3 ? A THR 3 40 4 Y 1 A GLU 4 ? A GLU 4 41 4 Y 1 A SER 96 ? A SER 96 42 4 Y 1 A GLU 97 ? A GLU 97 43 4 Y 1 A VAL 98 ? A VAL 98 44 4 Y 1 A PHE 99 ? A PHE 99 45 4 Y 1 A LYS 100 ? A LYS 100 46 4 Y 1 A SER 101 ? A SER 101 47 4 Y 1 A SER 102 ? A SER 102 48 4 Y 1 A ILE 103 ? A ILE 103 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 COA N1A N Y N 74 COA C2A C Y N 75 COA N3A N Y N 76 COA C4A C Y N 77 COA C5A C Y N 78 COA C6A C Y N 79 COA N6A N N N 80 COA N7A N Y N 81 COA C8A C Y N 82 COA N9A N Y N 83 COA C1B C N R 84 COA C2B C N R 85 COA O2B O N N 86 COA C3B C N S 87 COA O3B O N N 88 COA P3B P N N 89 COA O7A O N N 90 COA O8A O N N 91 COA O9A O N N 92 COA C4B C N R 93 COA O4B O N N 94 COA C5B C N N 95 COA O5B O N N 96 COA P1A P N S 97 COA O1A O N N 98 COA O2A O N N 99 COA O3A O N N 100 COA P2A P N S 101 COA O4A O N N 102 COA O5A O N N 103 COA O6A O N N 104 COA CBP C N N 105 COA CCP C N N 106 COA CDP C N N 107 COA CEP C N N 108 COA CAP C N R 109 COA OAP O N N 110 COA C9P C N N 111 COA O9P O N N 112 COA N8P N N N 113 COA C7P C N N 114 COA C6P C N N 115 COA C5P C N N 116 COA O5P O N N 117 COA N4P N N N 118 COA C3P C N N 119 COA C2P C N N 120 COA S1P S N N 121 COA H2A H N N 122 COA H61A H N N 123 COA H62A H N N 124 COA H8A H N N 125 COA H1B H N N 126 COA H2B H N N 127 COA HO2A H N N 128 COA H3B H N N 129 COA HOA8 H N N 130 COA HOA9 H N N 131 COA H4B H N N 132 COA H51A H N N 133 COA H52A H N N 134 COA HOA2 H N N 135 COA HOA5 H N N 136 COA H121 H N N 137 COA H122 H N N 138 COA H131 H N N 139 COA H132 H N N 140 COA H133 H N N 141 COA H141 H N N 142 COA H142 H N N 143 COA H143 H N N 144 COA H10 H N N 145 COA HO1 H N N 146 COA HN8 H N N 147 COA H71 H N N 148 COA H72 H N N 149 COA H61 H N N 150 COA H62 H N N 151 COA HN4 H N N 152 COA H31 H N N 153 COA H32 H N N 154 COA H21 H N N 155 COA H22 H N N 156 COA HS1 H N N 157 CYS N N N N 158 CYS CA C N R 159 CYS C C N N 160 CYS O O N N 161 CYS CB C N N 162 CYS SG S N N 163 CYS OXT O N N 164 CYS H H N N 165 CYS H2 H N N 166 CYS HA H N N 167 CYS HB2 H N N 168 CYS HB3 H N N 169 CYS HG H N N 170 CYS HXT H N N 171 GLU N N N N 172 GLU CA C N S 173 GLU C C N N 174 GLU O O N N 175 GLU CB C N N 176 GLU CG C N N 177 GLU CD C N N 178 GLU OE1 O N N 179 GLU OE2 O N N 180 GLU OXT O N N 181 GLU H H N N 182 GLU H2 H N N 183 GLU HA H N N 184 GLU HB2 H N N 185 GLU HB3 H N N 186 GLU HG2 H N N 187 GLU HG3 H N N 188 GLU HE2 H N N 189 GLU HXT H N N 190 GLY N N N N 191 GLY CA C N N 192 GLY C C N N 193 GLY O O N N 194 GLY OXT O N N 195 GLY H H N N 196 GLY H2 H N N 197 GLY HA2 H N N 198 GLY HA3 H N N 199 GLY HXT H N N 200 HIS N N N N 201 HIS CA C N S 202 HIS C C N N 203 HIS O O N N 204 HIS CB C N N 205 HIS CG C Y N 206 HIS ND1 N Y N 207 HIS CD2 C Y N 208 HIS CE1 C Y N 209 HIS NE2 N Y N 210 HIS OXT O N N 211 HIS H H N N 212 HIS H2 H N N 213 HIS HA H N N 214 HIS HB2 H N N 215 HIS HB3 H N N 216 HIS HD1 H N N 217 HIS HD2 H N N 218 HIS HE1 H N N 219 HIS HE2 H N N 220 HIS HXT H N N 221 HOH O O N N 222 HOH H1 H N N 223 HOH H2 H N N 224 ILE N N N N 225 ILE CA C N S 226 ILE C C N N 227 ILE O O N N 228 ILE CB C N S 229 ILE CG1 C N N 230 ILE CG2 C N N 231 ILE CD1 C N N 232 ILE OXT O N N 233 ILE H H N N 234 ILE H2 H N N 235 ILE HA H N N 236 ILE HB H N N 237 ILE HG12 H N N 238 ILE HG13 H N N 239 ILE HG21 H N N 240 ILE HG22 H N N 241 ILE HG23 H N N 242 ILE HD11 H N N 243 ILE HD12 H N N 244 ILE HD13 H N N 245 ILE HXT H N N 246 LEU N N N N 247 LEU CA C N S 248 LEU C C N N 249 LEU O O N N 250 LEU CB C N N 251 LEU CG C N N 252 LEU CD1 C N N 253 LEU CD2 C N N 254 LEU OXT O N N 255 LEU H H N N 256 LEU H2 H N N 257 LEU HA H N N 258 LEU HB2 H N N 259 LEU HB3 H N N 260 LEU HG H N N 261 LEU HD11 H N N 262 LEU HD12 H N N 263 LEU HD13 H N N 264 LEU HD21 H N N 265 LEU HD22 H N N 266 LEU HD23 H N N 267 LEU HXT H N N 268 LYS N N N N 269 LYS CA C N S 270 LYS C C N N 271 LYS O O N N 272 LYS CB C N N 273 LYS CG C N N 274 LYS CD C N N 275 LYS CE C N N 276 LYS NZ N N N 277 LYS OXT O N N 278 LYS H H N N 279 LYS H2 H N N 280 LYS HA H N N 281 LYS HB2 H N N 282 LYS HB3 H N N 283 LYS HG2 H N N 284 LYS HG3 H N N 285 LYS HD2 H N N 286 LYS HD3 H N N 287 LYS HE2 H N N 288 LYS HE3 H N N 289 LYS HZ1 H N N 290 LYS HZ2 H N N 291 LYS HZ3 H N N 292 LYS HXT H N N 293 MET N N N N 294 MET CA C N S 295 MET C C N N 296 MET O O N N 297 MET CB C N N 298 MET CG C N N 299 MET SD S N N 300 MET CE C N N 301 MET OXT O N N 302 MET H H N N 303 MET H2 H N N 304 MET HA H N N 305 MET HB2 H N N 306 MET HB3 H N N 307 MET HG2 H N N 308 MET HG3 H N N 309 MET HE1 H N N 310 MET HE2 H N N 311 MET HE3 H N N 312 MET HXT H N N 313 PHE N N N N 314 PHE CA C N S 315 PHE C C N N 316 PHE O O N N 317 PHE CB C N N 318 PHE CG C Y N 319 PHE CD1 C Y N 320 PHE CD2 C Y N 321 PHE CE1 C Y N 322 PHE CE2 C Y N 323 PHE CZ C Y N 324 PHE OXT O N N 325 PHE H H N N 326 PHE H2 H N N 327 PHE HA H N N 328 PHE HB2 H N N 329 PHE HB3 H N N 330 PHE HD1 H N N 331 PHE HD2 H N N 332 PHE HE1 H N N 333 PHE HE2 H N N 334 PHE HZ H N N 335 PHE HXT H N N 336 PRO N N N N 337 PRO CA C N S 338 PRO C C N N 339 PRO O O N N 340 PRO CB C N N 341 PRO CG C N N 342 PRO CD C N N 343 PRO OXT O N N 344 PRO H H N N 345 PRO HA H N N 346 PRO HB2 H N N 347 PRO HB3 H N N 348 PRO HG2 H N N 349 PRO HG3 H N N 350 PRO HD2 H N N 351 PRO HD3 H N N 352 PRO HXT H N N 353 SER N N N N 354 SER CA C N S 355 SER C C N N 356 SER O O N N 357 SER CB C N N 358 SER OG O N N 359 SER OXT O N N 360 SER H H N N 361 SER H2 H N N 362 SER HA H N N 363 SER HB2 H N N 364 SER HB3 H N N 365 SER HG H N N 366 SER HXT H N N 367 THR N N N N 368 THR CA C N S 369 THR C C N N 370 THR O O N N 371 THR CB C N R 372 THR OG1 O N N 373 THR CG2 C N N 374 THR OXT O N N 375 THR H H N N 376 THR H2 H N N 377 THR HA H N N 378 THR HB H N N 379 THR HG1 H N N 380 THR HG21 H N N 381 THR HG22 H N N 382 THR HG23 H N N 383 THR HXT H N N 384 TRP N N N N 385 TRP CA C N S 386 TRP C C N N 387 TRP O O N N 388 TRP CB C N N 389 TRP CG C Y N 390 TRP CD1 C Y N 391 TRP CD2 C Y N 392 TRP NE1 N Y N 393 TRP CE2 C Y N 394 TRP CE3 C Y N 395 TRP CZ2 C Y N 396 TRP CZ3 C Y N 397 TRP CH2 C Y N 398 TRP OXT O N N 399 TRP H H N N 400 TRP H2 H N N 401 TRP HA H N N 402 TRP HB2 H N N 403 TRP HB3 H N N 404 TRP HD1 H N N 405 TRP HE1 H N N 406 TRP HE3 H N N 407 TRP HZ2 H N N 408 TRP HZ3 H N N 409 TRP HH2 H N N 410 TRP HXT H N N 411 TYR N N N N 412 TYR CA C N S 413 TYR C C N N 414 TYR O O N N 415 TYR CB C N N 416 TYR CG C Y N 417 TYR CD1 C Y N 418 TYR CD2 C Y N 419 TYR CE1 C Y N 420 TYR CE2 C Y N 421 TYR CZ C Y N 422 TYR OH O N N 423 TYR OXT O N N 424 TYR H H N N 425 TYR H2 H N N 426 TYR HA H N N 427 TYR HB2 H N N 428 TYR HB3 H N N 429 TYR HD1 H N N 430 TYR HD2 H N N 431 TYR HE1 H N N 432 TYR HE2 H N N 433 TYR HH H N N 434 TYR HXT H N N 435 VAL N N N N 436 VAL CA C N S 437 VAL C C N N 438 VAL O O N N 439 VAL CB C N N 440 VAL CG1 C N N 441 VAL CG2 C N N 442 VAL OXT O N N 443 VAL H H N N 444 VAL H2 H N N 445 VAL HA H N N 446 VAL HB H N N 447 VAL HG11 H N N 448 VAL HG12 H N N 449 VAL HG13 H N N 450 VAL HG21 H N N 451 VAL HG22 H N N 452 VAL HG23 H N N 453 VAL HXT H N N 454 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 COA N1A C2A sing Y N 70 COA N1A C6A doub Y N 71 COA C2A N3A doub Y N 72 COA C2A H2A sing N N 73 COA N3A C4A sing Y N 74 COA C4A C5A doub Y N 75 COA C4A N9A sing Y N 76 COA C5A C6A sing Y N 77 COA C5A N7A sing Y N 78 COA C6A N6A sing N N 79 COA N6A H61A sing N N 80 COA N6A H62A sing N N 81 COA N7A C8A doub Y N 82 COA C8A N9A sing Y N 83 COA C8A H8A sing N N 84 COA N9A C1B sing N N 85 COA C1B C2B sing N N 86 COA C1B O4B sing N N 87 COA C1B H1B sing N N 88 COA C2B O2B sing N N 89 COA C2B C3B sing N N 90 COA C2B H2B sing N N 91 COA O2B HO2A sing N N 92 COA C3B O3B sing N N 93 COA C3B C4B sing N N 94 COA C3B H3B sing N N 95 COA O3B P3B sing N N 96 COA P3B O7A doub N N 97 COA P3B O8A sing N N 98 COA P3B O9A sing N N 99 COA O8A HOA8 sing N N 100 COA O9A HOA9 sing N N 101 COA C4B O4B sing N N 102 COA C4B C5B sing N N 103 COA C4B H4B sing N N 104 COA C5B O5B sing N N 105 COA C5B H51A sing N N 106 COA C5B H52A sing N N 107 COA O5B P1A sing N N 108 COA P1A O1A doub N N 109 COA P1A O2A sing N N 110 COA P1A O3A sing N N 111 COA O2A HOA2 sing N N 112 COA O3A P2A sing N N 113 COA P2A O4A doub N N 114 COA P2A O5A sing N N 115 COA P2A O6A sing N N 116 COA O5A HOA5 sing N N 117 COA O6A CCP sing N N 118 COA CBP CCP sing N N 119 COA CBP CDP sing N N 120 COA CBP CEP sing N N 121 COA CBP CAP sing N N 122 COA CCP H121 sing N N 123 COA CCP H122 sing N N 124 COA CDP H131 sing N N 125 COA CDP H132 sing N N 126 COA CDP H133 sing N N 127 COA CEP H141 sing N N 128 COA CEP H142 sing N N 129 COA CEP H143 sing N N 130 COA CAP OAP sing N N 131 COA CAP C9P sing N N 132 COA CAP H10 sing N N 133 COA OAP HO1 sing N N 134 COA C9P O9P doub N N 135 COA C9P N8P sing N N 136 COA N8P C7P sing N N 137 COA N8P HN8 sing N N 138 COA C7P C6P sing N N 139 COA C7P H71 sing N N 140 COA C7P H72 sing N N 141 COA C6P C5P sing N N 142 COA C6P H61 sing N N 143 COA C6P H62 sing N N 144 COA C5P O5P doub N N 145 COA C5P N4P sing N N 146 COA N4P C3P sing N N 147 COA N4P HN4 sing N N 148 COA C3P C2P sing N N 149 COA C3P H31 sing N N 150 COA C3P H32 sing N N 151 COA C2P S1P sing N N 152 COA C2P H21 sing N N 153 COA C2P H22 sing N N 154 COA S1P HS1 sing N N 155 CYS N CA sing N N 156 CYS N H sing N N 157 CYS N H2 sing N N 158 CYS CA C sing N N 159 CYS CA CB sing N N 160 CYS CA HA sing N N 161 CYS C O doub N N 162 CYS C OXT sing N N 163 CYS CB SG sing N N 164 CYS CB HB2 sing N N 165 CYS CB HB3 sing N N 166 CYS SG HG sing N N 167 CYS OXT HXT sing N N 168 GLU N CA sing N N 169 GLU N H sing N N 170 GLU N H2 sing N N 171 GLU CA C sing N N 172 GLU CA CB sing N N 173 GLU CA HA sing N N 174 GLU C O doub N N 175 GLU C OXT sing N N 176 GLU CB CG sing N N 177 GLU CB HB2 sing N N 178 GLU CB HB3 sing N N 179 GLU CG CD sing N N 180 GLU CG HG2 sing N N 181 GLU CG HG3 sing N N 182 GLU CD OE1 doub N N 183 GLU CD OE2 sing N N 184 GLU OE2 HE2 sing N N 185 GLU OXT HXT sing N N 186 GLY N CA sing N N 187 GLY N H sing N N 188 GLY N H2 sing N N 189 GLY CA C sing N N 190 GLY CA HA2 sing N N 191 GLY CA HA3 sing N N 192 GLY C O doub N N 193 GLY C OXT sing N N 194 GLY OXT HXT sing N N 195 HIS N CA sing N N 196 HIS N H sing N N 197 HIS N H2 sing N N 198 HIS CA C sing N N 199 HIS CA CB sing N N 200 HIS CA HA sing N N 201 HIS C O doub N N 202 HIS C OXT sing N N 203 HIS CB CG sing N N 204 HIS CB HB2 sing N N 205 HIS CB HB3 sing N N 206 HIS CG ND1 sing Y N 207 HIS CG CD2 doub Y N 208 HIS ND1 CE1 doub Y N 209 HIS ND1 HD1 sing N N 210 HIS CD2 NE2 sing Y N 211 HIS CD2 HD2 sing N N 212 HIS CE1 NE2 sing Y N 213 HIS CE1 HE1 sing N N 214 HIS NE2 HE2 sing N N 215 HIS OXT HXT sing N N 216 HOH O H1 sing N N 217 HOH O H2 sing N N 218 ILE N CA sing N N 219 ILE N H sing N N 220 ILE N H2 sing N N 221 ILE CA C sing N N 222 ILE CA CB sing N N 223 ILE CA HA sing N N 224 ILE C O doub N N 225 ILE C OXT sing N N 226 ILE CB CG1 sing N N 227 ILE CB CG2 sing N N 228 ILE CB HB sing N N 229 ILE CG1 CD1 sing N N 230 ILE CG1 HG12 sing N N 231 ILE CG1 HG13 sing N N 232 ILE CG2 HG21 sing N N 233 ILE CG2 HG22 sing N N 234 ILE CG2 HG23 sing N N 235 ILE CD1 HD11 sing N N 236 ILE CD1 HD12 sing N N 237 ILE CD1 HD13 sing N N 238 ILE OXT HXT sing N N 239 LEU N CA sing N N 240 LEU N H sing N N 241 LEU N H2 sing N N 242 LEU CA C sing N N 243 LEU CA CB sing N N 244 LEU CA HA sing N N 245 LEU C O doub N N 246 LEU C OXT sing N N 247 LEU CB CG sing N N 248 LEU CB HB2 sing N N 249 LEU CB HB3 sing N N 250 LEU CG CD1 sing N N 251 LEU CG CD2 sing N N 252 LEU CG HG sing N N 253 LEU CD1 HD11 sing N N 254 LEU CD1 HD12 sing N N 255 LEU CD1 HD13 sing N N 256 LEU CD2 HD21 sing N N 257 LEU CD2 HD22 sing N N 258 LEU CD2 HD23 sing N N 259 LEU OXT HXT sing N N 260 LYS N CA sing N N 261 LYS N H sing N N 262 LYS N H2 sing N N 263 LYS CA C sing N N 264 LYS CA CB sing N N 265 LYS CA HA sing N N 266 LYS C O doub N N 267 LYS C OXT sing N N 268 LYS CB CG sing N N 269 LYS CB HB2 sing N N 270 LYS CB HB3 sing N N 271 LYS CG CD sing N N 272 LYS CG HG2 sing N N 273 LYS CG HG3 sing N N 274 LYS CD CE sing N N 275 LYS CD HD2 sing N N 276 LYS CD HD3 sing N N 277 LYS CE NZ sing N N 278 LYS CE HE2 sing N N 279 LYS CE HE3 sing N N 280 LYS NZ HZ1 sing N N 281 LYS NZ HZ2 sing N N 282 LYS NZ HZ3 sing N N 283 LYS OXT HXT sing N N 284 MET N CA sing N N 285 MET N H sing N N 286 MET N H2 sing N N 287 MET CA C sing N N 288 MET CA CB sing N N 289 MET CA HA sing N N 290 MET C O doub N N 291 MET C OXT sing N N 292 MET CB CG sing N N 293 MET CB HB2 sing N N 294 MET CB HB3 sing N N 295 MET CG SD sing N N 296 MET CG HG2 sing N N 297 MET CG HG3 sing N N 298 MET SD CE sing N N 299 MET CE HE1 sing N N 300 MET CE HE2 sing N N 301 MET CE HE3 sing N N 302 MET OXT HXT sing N N 303 PHE N CA sing N N 304 PHE N H sing N N 305 PHE N H2 sing N N 306 PHE CA C sing N N 307 PHE CA CB sing N N 308 PHE CA HA sing N N 309 PHE C O doub N N 310 PHE C OXT sing N N 311 PHE CB CG sing N N 312 PHE CB HB2 sing N N 313 PHE CB HB3 sing N N 314 PHE CG CD1 doub Y N 315 PHE CG CD2 sing Y N 316 PHE CD1 CE1 sing Y N 317 PHE CD1 HD1 sing N N 318 PHE CD2 CE2 doub Y N 319 PHE CD2 HD2 sing N N 320 PHE CE1 CZ doub Y N 321 PHE CE1 HE1 sing N N 322 PHE CE2 CZ sing Y N 323 PHE CE2 HE2 sing N N 324 PHE CZ HZ sing N N 325 PHE OXT HXT sing N N 326 PRO N CA sing N N 327 PRO N CD sing N N 328 PRO N H sing N N 329 PRO CA C sing N N 330 PRO CA CB sing N N 331 PRO CA HA sing N N 332 PRO C O doub N N 333 PRO C OXT sing N N 334 PRO CB CG sing N N 335 PRO CB HB2 sing N N 336 PRO CB HB3 sing N N 337 PRO CG CD sing N N 338 PRO CG HG2 sing N N 339 PRO CG HG3 sing N N 340 PRO CD HD2 sing N N 341 PRO CD HD3 sing N N 342 PRO OXT HXT sing N N 343 SER N CA sing N N 344 SER N H sing N N 345 SER N H2 sing N N 346 SER CA C sing N N 347 SER CA CB sing N N 348 SER CA HA sing N N 349 SER C O doub N N 350 SER C OXT sing N N 351 SER CB OG sing N N 352 SER CB HB2 sing N N 353 SER CB HB3 sing N N 354 SER OG HG sing N N 355 SER OXT HXT sing N N 356 THR N CA sing N N 357 THR N H sing N N 358 THR N H2 sing N N 359 THR CA C sing N N 360 THR CA CB sing N N 361 THR CA HA sing N N 362 THR C O doub N N 363 THR C OXT sing N N 364 THR CB OG1 sing N N 365 THR CB CG2 sing N N 366 THR CB HB sing N N 367 THR OG1 HG1 sing N N 368 THR CG2 HG21 sing N N 369 THR CG2 HG22 sing N N 370 THR CG2 HG23 sing N N 371 THR OXT HXT sing N N 372 TRP N CA sing N N 373 TRP N H sing N N 374 TRP N H2 sing N N 375 TRP CA C sing N N 376 TRP CA CB sing N N 377 TRP CA HA sing N N 378 TRP C O doub N N 379 TRP C OXT sing N N 380 TRP CB CG sing N N 381 TRP CB HB2 sing N N 382 TRP CB HB3 sing N N 383 TRP CG CD1 doub Y N 384 TRP CG CD2 sing Y N 385 TRP CD1 NE1 sing Y N 386 TRP CD1 HD1 sing N N 387 TRP CD2 CE2 doub Y N 388 TRP CD2 CE3 sing Y N 389 TRP NE1 CE2 sing Y N 390 TRP NE1 HE1 sing N N 391 TRP CE2 CZ2 sing Y N 392 TRP CE3 CZ3 doub Y N 393 TRP CE3 HE3 sing N N 394 TRP CZ2 CH2 doub Y N 395 TRP CZ2 HZ2 sing N N 396 TRP CZ3 CH2 sing Y N 397 TRP CZ3 HZ3 sing N N 398 TRP CH2 HH2 sing N N 399 TRP OXT HXT sing N N 400 TYR N CA sing N N 401 TYR N H sing N N 402 TYR N H2 sing N N 403 TYR CA C sing N N 404 TYR CA CB sing N N 405 TYR CA HA sing N N 406 TYR C O doub N N 407 TYR C OXT sing N N 408 TYR CB CG sing N N 409 TYR CB HB2 sing N N 410 TYR CB HB3 sing N N 411 TYR CG CD1 doub Y N 412 TYR CG CD2 sing Y N 413 TYR CD1 CE1 sing Y N 414 TYR CD1 HD1 sing N N 415 TYR CD2 CE2 doub Y N 416 TYR CD2 HD2 sing N N 417 TYR CE1 CZ doub Y N 418 TYR CE1 HE1 sing N N 419 TYR CE2 CZ sing Y N 420 TYR CE2 HE2 sing N N 421 TYR CZ OH sing N N 422 TYR OH HH sing N N 423 TYR OXT HXT sing N N 424 VAL N CA sing N N 425 VAL N H sing N N 426 VAL N H2 sing N N 427 VAL CA C sing N N 428 VAL CA CB sing N N 429 VAL CA HA sing N N 430 VAL C O doub N N 431 VAL C OXT sing N N 432 VAL CB CG1 sing N N 433 VAL CB CG2 sing N N 434 VAL CB HB sing N N 435 VAL CG1 HG11 sing N N 436 VAL CG1 HG12 sing N N 437 VAL CG1 HG13 sing N N 438 VAL CG2 HG21 sing N N 439 VAL CG2 HG22 sing N N 440 VAL CG2 HG23 sing N N 441 VAL OXT HXT sing N N 442 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COENZYME A' COA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2IL4 _pdbx_initial_refinement_model.details 'PDB entry 2IL4' #