data_2Q5A # _entry.id 2Q5A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Q5A RCSB RCSB043166 WWPDB D_1000043166 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2007-06-26 _pdbx_database_PDB_obs_spr.pdb_id 2Q5A _pdbx_database_PDB_obs_spr.replace_pdb_id 2ITI _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2itk 'human Pin1 bound to D-PEPTIDE' unspecified PDB 1pin 'Pin1 peptidyl-prolyl cis-trans isomerase from Homo sapiens' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Q5A _pdbx_database_status.recvd_initial_deposition_date 2007-05-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Noel, J.P.' 1 'Zhang, Y.' 2 # _citation.id primary _citation.title 'Structural basis for high-affinity peptide inhibition of human Pin1.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 2 _citation.page_first 320 _citation.page_last 328 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17518432 _citation.pdbx_database_id_DOI 10.1021/cb7000044 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhang, Y.' 1 primary 'Daum, S.' 2 primary 'Wildemann, D.' 3 primary 'Zhou, X.Z.' 4 primary 'Verdecia, M.A.' 5 primary 'Bowman, M.E.' 6 primary 'Lucke, C.' 7 primary 'Hunter, T.' 8 primary 'Lu, K.P.' 9 primary 'Fischer, G.' 10 primary 'Noel, J.P.' 11 # _cell.entry_id 2Q5A _cell.length_a 68.842 _cell.length_b 68.842 _cell.length_c 79.513 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Q5A _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1' 18524.525 1 5.2.1.8 R14A ? ? 2 polymer syn 'Five residue peptide' 806.822 1 ? ? ? ? 3 non-polymer syn 3,6,9,12,15,18-HEXAOXAICOSANE 294.384 1 ? ? ? ? 4 water nat water 18.015 167 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rotamase Pin1, PPIase Pin1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQE KITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGI HIILRTE ; ;GSHGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQE KITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGI HIILRTE ; A ? 2 'polypeptide(L)' no yes '(ACE)F(TPO)(YCP)(NAL)Q(NH2)' XFTXAQX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 GLY n 1 5 MET n 1 6 ALA n 1 7 ASP n 1 8 GLU n 1 9 GLU n 1 10 LYS n 1 11 LEU n 1 12 PRO n 1 13 PRO n 1 14 GLY n 1 15 TRP n 1 16 GLU n 1 17 LYS n 1 18 ALA n 1 19 MET n 1 20 SER n 1 21 ARG n 1 22 SER n 1 23 SER n 1 24 GLY n 1 25 ARG n 1 26 VAL n 1 27 TYR n 1 28 TYR n 1 29 PHE n 1 30 ASN n 1 31 HIS n 1 32 ILE n 1 33 THR n 1 34 ASN n 1 35 ALA n 1 36 SER n 1 37 GLN n 1 38 TRP n 1 39 GLU n 1 40 ARG n 1 41 PRO n 1 42 SER n 1 43 GLY n 1 44 ASN n 1 45 SER n 1 46 SER n 1 47 SER n 1 48 GLY n 1 49 GLY n 1 50 LYS n 1 51 ASN n 1 52 GLY n 1 53 GLN n 1 54 GLY n 1 55 GLU n 1 56 PRO n 1 57 ALA n 1 58 ARG n 1 59 VAL n 1 60 ARG n 1 61 CYS n 1 62 SER n 1 63 HIS n 1 64 LEU n 1 65 LEU n 1 66 VAL n 1 67 LYS n 1 68 HIS n 1 69 SER n 1 70 GLN n 1 71 SER n 1 72 ARG n 1 73 ARG n 1 74 PRO n 1 75 SER n 1 76 SER n 1 77 TRP n 1 78 ARG n 1 79 GLN n 1 80 GLU n 1 81 LYS n 1 82 ILE n 1 83 THR n 1 84 ARG n 1 85 THR n 1 86 LYS n 1 87 GLU n 1 88 GLU n 1 89 ALA n 1 90 LEU n 1 91 GLU n 1 92 LEU n 1 93 ILE n 1 94 ASN n 1 95 GLY n 1 96 TYR n 1 97 ILE n 1 98 GLN n 1 99 LYS n 1 100 ILE n 1 101 LYS n 1 102 SER n 1 103 GLY n 1 104 GLU n 1 105 GLU n 1 106 ASP n 1 107 PHE n 1 108 GLU n 1 109 SER n 1 110 LEU n 1 111 ALA n 1 112 SER n 1 113 GLN n 1 114 PHE n 1 115 SER n 1 116 ASP n 1 117 CYS n 1 118 SER n 1 119 SER n 1 120 ALA n 1 121 LYS n 1 122 ALA n 1 123 ARG n 1 124 GLY n 1 125 ASP n 1 126 LEU n 1 127 GLY n 1 128 ALA n 1 129 PHE n 1 130 SER n 1 131 ARG n 1 132 GLY n 1 133 GLN n 1 134 MET n 1 135 GLN n 1 136 LYS n 1 137 PRO n 1 138 PHE n 1 139 GLU n 1 140 ASP n 1 141 ALA n 1 142 SER n 1 143 PHE n 1 144 ALA n 1 145 LEU n 1 146 ARG n 1 147 THR n 1 148 GLY n 1 149 GLU n 1 150 MET n 1 151 SER n 1 152 GLY n 1 153 PRO n 1 154 VAL n 1 155 PHE n 1 156 THR n 1 157 ASP n 1 158 SER n 1 159 GLY n 1 160 ILE n 1 161 HIS n 1 162 ILE n 1 163 ILE n 1 164 LEU n 1 165 ARG n 1 166 THR n 1 167 GLU n 2 1 ACE n 2 2 PHE n 2 3 TPO n 2 4 YCP n 2 5 NAL n 2 6 GLN n 2 7 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PIN1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HELA _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic peptide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PIN1_HUMAN Q13526 1 ;MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITR TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIIL RTE ; 1 ? 2 PDB 2Q5A 2Q5A 2 XFTXAQX ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Q5A A 5 ? 167 ? Q13526 1 ? 163 ? 1 163 2 2 2Q5A B 2 ? 7 ? 2Q5A 501 ? 506 ? 501 506 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Q5A GLY A 1 ? UNP Q13526 ? ? 'EXPRESSION TAG' -3 1 1 2Q5A SER A 2 ? UNP Q13526 ? ? 'EXPRESSION TAG' -2 2 1 2Q5A HIS A 3 ? UNP Q13526 ? ? 'EXPRESSION TAG' -1 3 1 2Q5A GLY A 4 ? UNP Q13526 ? ? 'EXPRESSION TAG' 0 4 1 2Q5A ALA A 18 ? UNP Q13526 ARG 14 'ENGINEERED MUTATION' 14 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 16P non-polymer . 3,6,9,12,15,18-HEXAOXAICOSANE ? 'C14 H30 O6' 294.384 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAL 'L-peptide linking' n 'BETA-(2-NAPHTHYL)-ALANINE' ? 'C13 H13 N O2' 215.248 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TPO 'L-peptide linking' n PHOSPHOTHREONINE PHOSPHONOTHREONINE 'C4 H10 N O6 P' 199.099 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YCP 'L-peptide linking' . '(2S)-piperidine-2-carboxylic acid' ? 'C6 H11 N O2' 129.157 # _exptl.entry_id 2Q5A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_percent_sol 56.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'M Ammonium Sulfate, 1% PEG400, 100mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-03-25 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2Q5A _reflns.observed_criterion_sigma_F -3 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 33 _reflns.number_all 35684 _reflns.number_obs 34360 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 44.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 96.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.17 _reflns_shell.meanI_over_sigI_obs 6.9 _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2Q5A _refine.ls_number_reflns_obs 32653 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 98.37 _refine.ls_R_factor_obs 0.23334 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23238 _refine.ls_R_factor_R_free 0.25235 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1705 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.B_iso_mean 19.310 _refine.aniso_B[1][1] 0.62 _refine.aniso_B[2][2] 0.62 _refine.aniso_B[3][3] -0.92 _refine.aniso_B[1][2] 0.31 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.081 _refine.pdbx_overall_ESU_R_Free 0.080 _refine.overall_SU_ML 0.055 _refine.overall_SU_B 1.445 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1204 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 1391 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 33 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1250 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.383 2.001 ? 1674 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.113 5.000 ? 143 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.381 22.586 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.305 15.000 ? 211 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.817 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 167 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 948 'X-RAY DIFFRACTION' ? r_nbd_refined 0.200 0.200 ? 540 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.304 0.200 ? 835 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.151 0.200 ? 132 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.177 0.200 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.154 0.200 ? 27 'X-RAY DIFFRACTION' ? r_mcbond_it 0.945 1.500 ? 751 'X-RAY DIFFRACTION' ? r_mcangle_it 1.492 2.000 ? 1168 'X-RAY DIFFRACTION' ? r_scbond_it 2.223 3.000 ? 574 'X-RAY DIFFRACTION' ? r_scangle_it 3.479 4.500 ? 506 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.5 _refine_ls_shell.d_res_low 1.538 _refine_ls_shell.number_reflns_R_work 2202 _refine_ls_shell.R_factor_R_work 0.3 _refine_ls_shell.percent_reflns_obs 93.65 _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Q5A _struct.title 'human Pin1 bound to L-PEPTIDE' _struct.pdbx_descriptor 'Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (E.C.5.2.1.8), Five residue peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Q5A _struct_keywords.pdbx_keywords 'ISOMERASE/ISOMERASE INHIBITOR' _struct_keywords.text 'ISOMERASE WW domain, ISOMERASE-ISOMERASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 85 ? SER A 102 ? THR A 81 SER A 98 1 ? 18 HELX_P HELX_P2 2 ASP A 106 ? SER A 115 ? ASP A 102 SER A 111 1 ? 10 HELX_P HELX_P3 3 CYS A 117 ? ARG A 123 ? CYS A 113 ARG A 119 5 ? 7 HELX_P HELX_P4 4 GLN A 135 ? LEU A 145 ? GLN A 131 LEU A 141 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B GLN 6 C ? ? ? 1_555 B NH2 7 N ? ? B GLN 505 B NH2 506 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? B PHE 2 C ? ? ? 1_555 B TPO 3 N ? ? B PHE 501 B TPO 502 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? B YCP 4 C ? ? ? 1_555 B NAL 5 N ? ? B YCP 503 B NAL 504 1_555 ? ? ? ? ? ? ? 1.346 ? covale4 covale ? ? B NAL 5 C ? ? ? 1_555 B GLN 6 N ? ? B NAL 504 B GLN 505 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TPO _struct_mon_prot_cis.label_seq_id 3 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TPO _struct_mon_prot_cis.auth_seq_id 502 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 YCP _struct_mon_prot_cis.pdbx_label_seq_id_2 4 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 YCP _struct_mon_prot_cis.pdbx_auth_seq_id_2 503 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -19.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 15 ? MET A 19 ? TRP A 11 MET A 15 A 2 VAL A 26 ? ASN A 30 ? VAL A 22 ASN A 26 A 3 SER A 36 ? GLN A 37 ? SER A 32 GLN A 33 B 1 ASP A 125 ? SER A 130 ? ASP A 121 SER A 126 B 2 ARG A 58 ? VAL A 66 ? ARG A 54 VAL A 62 B 3 GLY A 159 ? ARG A 165 ? GLY A 155 ARG A 161 B 4 VAL A 154 ? THR A 156 ? VAL A 150 THR A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 18 ? N ALA A 14 O TYR A 27 ? O TYR A 23 A 2 3 N TYR A 28 ? N TYR A 24 O GLN A 37 ? O GLN A 33 B 1 2 O LEU A 126 ? O LEU A 122 N CYS A 61 ? N CYS A 57 B 2 3 N SER A 62 ? N SER A 58 O LEU A 164 ? O LEU A 160 B 3 4 O HIS A 161 ? O HIS A 157 N VAL A 154 ? N VAL A 150 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE 16P A 300' AC2 Software ? ? ? ? 12 'BINDING SITE FOR CHAIN B OF FIVE RESIDUE PEPTIDE' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 TYR A 27 ? TYR A 23 . ? 1_555 ? 2 AC1 15 ASN A 34 ? ASN A 30 . ? 1_555 ? 3 AC1 15 ALA A 35 ? ALA A 31 . ? 1_555 ? 4 AC1 15 SER A 36 ? SER A 32 . ? 1_555 ? 5 AC1 15 TRP A 38 ? TRP A 34 . ? 1_555 ? 6 AC1 15 ILE A 97 ? ILE A 93 . ? 1_555 ? 7 AC1 15 LYS A 101 ? LYS A 97 . ? 1_555 ? 8 AC1 15 LYS A 101 ? LYS A 97 . ? 5_555 ? 9 AC1 15 SER A 102 ? SER A 98 . ? 5_555 ? 10 AC1 15 MET A 150 ? MET A 146 . ? 1_555 ? 11 AC1 15 SER A 151 ? SER A 147 . ? 1_555 ? 12 AC1 15 GLY A 152 ? GLY A 148 . ? 1_555 ? 13 AC1 15 HOH D . ? HOH A 325 . ? 1_555 ? 14 AC1 15 HOH D . ? HOH A 334 . ? 1_555 ? 15 AC1 15 HOH D . ? HOH A 394 . ? 1_555 ? 16 AC2 12 MET A 19 ? MET A 15 . ? 4_566 ? 17 AC2 12 LEU A 65 ? LEU A 61 . ? 1_555 ? 18 AC2 12 LYS A 67 ? LYS A 63 . ? 1_555 ? 19 AC2 12 ARG A 73 ? ARG A 69 . ? 1_555 ? 20 AC2 12 LEU A 126 ? LEU A 122 . ? 1_555 ? 21 AC2 12 GLN A 133 ? GLN A 129 . ? 1_555 ? 22 AC2 12 MET A 134 ? MET A 130 . ? 1_555 ? 23 AC2 12 GLN A 135 ? GLN A 131 . ? 1_555 ? 24 AC2 12 HOH E . ? HOH B 28 . ? 1_555 ? 25 AC2 12 HOH E . ? HOH B 33 . ? 1_555 ? 26 AC2 12 HOH E . ? HOH B 83 . ? 1_555 ? 27 AC2 12 HOH E . ? HOH B 148 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Q5A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Q5A _atom_sites.fract_transf_matrix[1][1] 0.014526 _atom_sites.fract_transf_matrix[1][2] 0.008387 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016773 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012577 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 HIS 3 -1 ? ? ? A . n A 1 4 GLY 4 0 ? ? ? A . n A 1 5 MET 5 1 ? ? ? A . n A 1 6 ALA 6 2 ? ? ? A . n A 1 7 ASP 7 3 ? ? ? A . n A 1 8 GLU 8 4 ? ? ? A . n A 1 9 GLU 9 5 ? ? ? A . n A 1 10 LYS 10 6 ? ? ? A . n A 1 11 LEU 11 7 7 LEU LEU A . n A 1 12 PRO 12 8 8 PRO PRO A . n A 1 13 PRO 13 9 9 PRO PRO A . n A 1 14 GLY 14 10 10 GLY GLY A . n A 1 15 TRP 15 11 11 TRP TRP A . n A 1 16 GLU 16 12 12 GLU GLU A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 MET 19 15 15 MET MET A . n A 1 20 SER 20 16 16 SER SER A . n A 1 21 ARG 21 17 17 ARG ARG A . n A 1 22 SER 22 18 18 SER SER A . n A 1 23 SER 23 19 19 SER SER A . n A 1 24 GLY 24 20 20 GLY GLY A . n A 1 25 ARG 25 21 21 ARG ARG A . n A 1 26 VAL 26 22 22 VAL VAL A . n A 1 27 TYR 27 23 23 TYR TYR A . n A 1 28 TYR 28 24 24 TYR TYR A . n A 1 29 PHE 29 25 25 PHE PHE A . n A 1 30 ASN 30 26 26 ASN ASN A . n A 1 31 HIS 31 27 27 HIS HIS A . n A 1 32 ILE 32 28 28 ILE ILE A . n A 1 33 THR 33 29 29 THR THR A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 ALA 35 31 31 ALA ALA A . n A 1 36 SER 36 32 32 SER SER A . n A 1 37 GLN 37 33 33 GLN GLN A . n A 1 38 TRP 38 34 34 TRP TRP A . n A 1 39 GLU 39 35 35 GLU GLU A . n A 1 40 ARG 40 36 36 ARG ARG A . n A 1 41 PRO 41 37 37 PRO PRO A . n A 1 42 SER 42 38 38 SER SER A . n A 1 43 GLY 43 39 ? ? ? A . n A 1 44 ASN 44 40 ? ? ? A . n A 1 45 SER 45 41 ? ? ? A . n A 1 46 SER 46 42 ? ? ? A . n A 1 47 SER 47 43 ? ? ? A . n A 1 48 GLY 48 44 ? ? ? A . n A 1 49 GLY 49 45 ? ? ? A . n A 1 50 LYS 50 46 ? ? ? A . n A 1 51 ASN 51 47 ? ? ? A . n A 1 52 GLY 52 48 ? ? ? A . n A 1 53 GLN 53 49 ? ? ? A . n A 1 54 GLY 54 50 ? ? ? A . n A 1 55 GLU 55 51 51 GLU GLU A . n A 1 56 PRO 56 52 52 PRO PRO A . n A 1 57 ALA 57 53 53 ALA ALA A . n A 1 58 ARG 58 54 54 ARG ARG A . n A 1 59 VAL 59 55 55 VAL VAL A . n A 1 60 ARG 60 56 56 ARG ARG A . n A 1 61 CYS 61 57 57 CYS CYS A . n A 1 62 SER 62 58 58 SER SER A . n A 1 63 HIS 63 59 59 HIS HIS A . n A 1 64 LEU 64 60 60 LEU LEU A . n A 1 65 LEU 65 61 61 LEU LEU A . n A 1 66 VAL 66 62 62 VAL VAL A . n A 1 67 LYS 67 63 63 LYS LYS A . n A 1 68 HIS 68 64 64 HIS HIS A . n A 1 69 SER 69 65 65 SER SER A . n A 1 70 GLN 70 66 66 GLN GLN A . n A 1 71 SER 71 67 67 SER SER A . n A 1 72 ARG 72 68 68 ARG ARG A . n A 1 73 ARG 73 69 69 ARG ARG A . n A 1 74 PRO 74 70 70 PRO PRO A . n A 1 75 SER 75 71 71 SER SER A . n A 1 76 SER 76 72 72 SER SER A . n A 1 77 TRP 77 73 73 TRP TRP A . n A 1 78 ARG 78 74 74 ARG ARG A . n A 1 79 GLN 79 75 75 GLN GLN A . n A 1 80 GLU 80 76 76 GLU GLU A . n A 1 81 LYS 81 77 77 LYS LYS A . n A 1 82 ILE 82 78 78 ILE ILE A . n A 1 83 THR 83 79 79 THR THR A . n A 1 84 ARG 84 80 80 ARG ARG A . n A 1 85 THR 85 81 81 THR THR A . n A 1 86 LYS 86 82 82 LYS LYS A . n A 1 87 GLU 87 83 83 GLU GLU A . n A 1 88 GLU 88 84 84 GLU GLU A . n A 1 89 ALA 89 85 85 ALA ALA A . n A 1 90 LEU 90 86 86 LEU LEU A . n A 1 91 GLU 91 87 87 GLU GLU A . n A 1 92 LEU 92 88 88 LEU LEU A . n A 1 93 ILE 93 89 89 ILE ILE A . n A 1 94 ASN 94 90 90 ASN ASN A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 TYR 96 92 92 TYR TYR A . n A 1 97 ILE 97 93 93 ILE ILE A . n A 1 98 GLN 98 94 94 GLN GLN A . n A 1 99 LYS 99 95 95 LYS LYS A . n A 1 100 ILE 100 96 96 ILE ILE A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 SER 102 98 98 SER SER A . n A 1 103 GLY 103 99 99 GLY GLY A . n A 1 104 GLU 104 100 100 GLU GLU A . n A 1 105 GLU 105 101 101 GLU GLU A . n A 1 106 ASP 106 102 102 ASP ASP A . n A 1 107 PHE 107 103 103 PHE PHE A . n A 1 108 GLU 108 104 104 GLU GLU A . n A 1 109 SER 109 105 105 SER SER A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 ALA 111 107 107 ALA ALA A . n A 1 112 SER 112 108 108 SER SER A . n A 1 113 GLN 113 109 109 GLN GLN A . n A 1 114 PHE 114 110 110 PHE PHE A . n A 1 115 SER 115 111 111 SER SER A . n A 1 116 ASP 116 112 112 ASP ASP A . n A 1 117 CYS 117 113 113 CYS CYS A . n A 1 118 SER 118 114 114 SER SER A . n A 1 119 SER 119 115 115 SER SER A . n A 1 120 ALA 120 116 116 ALA ALA A . n A 1 121 LYS 121 117 117 LYS LYS A . n A 1 122 ALA 122 118 118 ALA ALA A . n A 1 123 ARG 123 119 119 ARG ARG A . n A 1 124 GLY 124 120 120 GLY GLY A . n A 1 125 ASP 125 121 121 ASP ASP A . n A 1 126 LEU 126 122 122 LEU LEU A . n A 1 127 GLY 127 123 123 GLY GLY A . n A 1 128 ALA 128 124 124 ALA ALA A . n A 1 129 PHE 129 125 125 PHE PHE A . n A 1 130 SER 130 126 126 SER SER A . n A 1 131 ARG 131 127 127 ARG ARG A . n A 1 132 GLY 132 128 128 GLY GLY A . n A 1 133 GLN 133 129 129 GLN GLN A . n A 1 134 MET 134 130 130 MET MET A . n A 1 135 GLN 135 131 131 GLN GLN A . n A 1 136 LYS 136 132 132 LYS LYS A . n A 1 137 PRO 137 133 133 PRO PRO A . n A 1 138 PHE 138 134 134 PHE PHE A . n A 1 139 GLU 139 135 135 GLU GLU A . n A 1 140 ASP 140 136 136 ASP ASP A . n A 1 141 ALA 141 137 137 ALA ALA A . n A 1 142 SER 142 138 138 SER SER A . n A 1 143 PHE 143 139 139 PHE PHE A . n A 1 144 ALA 144 140 140 ALA ALA A . n A 1 145 LEU 145 141 141 LEU LEU A . n A 1 146 ARG 146 142 142 ARG ARG A . n A 1 147 THR 147 143 143 THR THR A . n A 1 148 GLY 148 144 144 GLY GLY A . n A 1 149 GLU 149 145 145 GLU GLU A . n A 1 150 MET 150 146 146 MET MET A . n A 1 151 SER 151 147 147 SER SER A . n A 1 152 GLY 152 148 148 GLY GLY A . n A 1 153 PRO 153 149 149 PRO PRO A . n A 1 154 VAL 154 150 150 VAL VAL A . n A 1 155 PHE 155 151 151 PHE PHE A . n A 1 156 THR 156 152 152 THR THR A . n A 1 157 ASP 157 153 153 ASP ASP A . n A 1 158 SER 158 154 154 SER SER A . n A 1 159 GLY 159 155 155 GLY GLY A . n A 1 160 ILE 160 156 156 ILE ILE A . n A 1 161 HIS 161 157 157 HIS HIS A . n A 1 162 ILE 162 158 158 ILE ILE A . n A 1 163 ILE 163 159 159 ILE ILE A . n A 1 164 LEU 164 160 160 LEU LEU A . n A 1 165 ARG 165 161 161 ARG ARG A . n A 1 166 THR 166 162 162 THR THR A . n A 1 167 GLU 167 163 163 GLU GLU A . n B 2 1 ACE 1 500 ? ? ? B . n B 2 2 PHE 2 501 501 PHE PHE B . n B 2 3 TPO 3 502 502 TPO TPO B . n B 2 4 YCP 4 503 503 YCP YCP B . n B 2 5 NAL 5 504 504 NAL NAL B . n B 2 6 GLN 6 505 505 GLN GLN B . n B 2 7 NH2 7 506 506 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 16P 1 300 300 16P P15 A . D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . D 4 HOH 3 303 3 HOH HOH A . D 4 HOH 4 304 4 HOH HOH A . D 4 HOH 5 305 5 HOH HOH A . D 4 HOH 6 306 6 HOH HOH A . D 4 HOH 7 307 7 HOH HOH A . D 4 HOH 8 308 8 HOH HOH A . D 4 HOH 9 309 9 HOH HOH A . D 4 HOH 10 310 10 HOH HOH A . D 4 HOH 11 311 11 HOH HOH A . D 4 HOH 12 312 12 HOH HOH A . D 4 HOH 13 313 13 HOH HOH A . D 4 HOH 14 314 14 HOH HOH A . D 4 HOH 15 315 15 HOH HOH A . D 4 HOH 16 316 16 HOH HOH A . D 4 HOH 17 317 17 HOH HOH A . D 4 HOH 18 318 18 HOH HOH A . D 4 HOH 19 319 19 HOH HOH A . D 4 HOH 20 320 20 HOH HOH A . D 4 HOH 21 321 21 HOH HOH A . D 4 HOH 22 322 22 HOH HOH A . D 4 HOH 23 323 23 HOH HOH A . D 4 HOH 24 324 24 HOH HOH A . D 4 HOH 25 325 25 HOH HOH A . D 4 HOH 26 326 26 HOH HOH A . D 4 HOH 27 327 27 HOH HOH A . D 4 HOH 28 328 29 HOH HOH A . D 4 HOH 29 329 30 HOH HOH A . D 4 HOH 30 330 31 HOH HOH A . D 4 HOH 31 331 32 HOH HOH A . D 4 HOH 32 332 34 HOH HOH A . D 4 HOH 33 333 35 HOH HOH A . D 4 HOH 34 334 36 HOH HOH A . D 4 HOH 35 335 37 HOH HOH A . D 4 HOH 36 336 38 HOH HOH A . D 4 HOH 37 337 39 HOH HOH A . D 4 HOH 38 338 40 HOH HOH A . D 4 HOH 39 339 41 HOH HOH A . D 4 HOH 40 340 42 HOH HOH A . D 4 HOH 41 341 43 HOH HOH A . D 4 HOH 42 342 44 HOH HOH A . D 4 HOH 43 343 45 HOH HOH A . D 4 HOH 44 344 46 HOH HOH A . D 4 HOH 45 345 47 HOH HOH A . D 4 HOH 46 346 48 HOH HOH A . D 4 HOH 47 347 49 HOH HOH A . D 4 HOH 48 348 50 HOH HOH A . D 4 HOH 49 349 51 HOH HOH A . D 4 HOH 50 350 52 HOH HOH A . D 4 HOH 51 351 54 HOH HOH A . D 4 HOH 52 352 55 HOH HOH A . D 4 HOH 53 353 56 HOH HOH A . D 4 HOH 54 354 57 HOH HOH A . D 4 HOH 55 355 58 HOH HOH A . D 4 HOH 56 356 59 HOH HOH A . D 4 HOH 57 357 60 HOH HOH A . D 4 HOH 58 358 61 HOH HOH A . D 4 HOH 59 359 62 HOH HOH A . D 4 HOH 60 360 63 HOH HOH A . D 4 HOH 61 361 64 HOH HOH A . D 4 HOH 62 362 65 HOH HOH A . D 4 HOH 63 363 66 HOH HOH A . D 4 HOH 64 364 67 HOH HOH A . D 4 HOH 65 365 68 HOH HOH A . D 4 HOH 66 366 69 HOH HOH A . D 4 HOH 67 367 70 HOH HOH A . D 4 HOH 68 368 71 HOH HOH A . D 4 HOH 69 369 72 HOH HOH A . D 4 HOH 70 370 73 HOH HOH A . D 4 HOH 71 371 74 HOH HOH A . D 4 HOH 72 372 75 HOH HOH A . D 4 HOH 73 373 76 HOH HOH A . D 4 HOH 74 374 77 HOH HOH A . D 4 HOH 75 375 78 HOH HOH A . D 4 HOH 76 376 79 HOH HOH A . D 4 HOH 77 377 80 HOH HOH A . D 4 HOH 78 378 81 HOH HOH A . D 4 HOH 79 379 82 HOH HOH A . D 4 HOH 80 380 84 HOH HOH A . D 4 HOH 81 381 85 HOH HOH A . D 4 HOH 82 382 86 HOH HOH A . D 4 HOH 83 383 87 HOH HOH A . D 4 HOH 84 384 88 HOH HOH A . D 4 HOH 85 385 89 HOH HOH A . D 4 HOH 86 386 90 HOH HOH A . D 4 HOH 87 387 91 HOH HOH A . D 4 HOH 88 388 92 HOH HOH A . D 4 HOH 89 389 93 HOH HOH A . D 4 HOH 90 390 94 HOH HOH A . D 4 HOH 91 391 95 HOH HOH A . D 4 HOH 92 392 96 HOH HOH A . D 4 HOH 93 393 97 HOH HOH A . D 4 HOH 94 394 98 HOH HOH A . D 4 HOH 95 395 99 HOH HOH A . D 4 HOH 96 396 100 HOH HOH A . D 4 HOH 97 397 101 HOH HOH A . D 4 HOH 98 398 102 HOH HOH A . D 4 HOH 99 399 103 HOH HOH A . D 4 HOH 100 400 104 HOH HOH A . D 4 HOH 101 401 105 HOH HOH A . D 4 HOH 102 402 106 HOH HOH A . D 4 HOH 103 403 107 HOH HOH A . D 4 HOH 104 404 108 HOH HOH A . D 4 HOH 105 405 109 HOH HOH A . D 4 HOH 106 406 110 HOH HOH A . D 4 HOH 107 407 111 HOH HOH A . D 4 HOH 108 408 112 HOH HOH A . D 4 HOH 109 409 113 HOH HOH A . D 4 HOH 110 410 114 HOH HOH A . D 4 HOH 111 411 115 HOH HOH A . D 4 HOH 112 412 116 HOH HOH A . D 4 HOH 113 413 117 HOH HOH A . D 4 HOH 114 414 118 HOH HOH A . D 4 HOH 115 415 119 HOH HOH A . D 4 HOH 116 416 120 HOH HOH A . D 4 HOH 117 417 121 HOH HOH A . D 4 HOH 118 418 122 HOH HOH A . D 4 HOH 119 419 123 HOH HOH A . D 4 HOH 120 420 124 HOH HOH A . D 4 HOH 121 421 125 HOH HOH A . D 4 HOH 122 422 126 HOH HOH A . D 4 HOH 123 423 127 HOH HOH A . D 4 HOH 124 424 128 HOH HOH A . D 4 HOH 125 425 129 HOH HOH A . D 4 HOH 126 426 130 HOH HOH A . D 4 HOH 127 427 131 HOH HOH A . D 4 HOH 128 428 132 HOH HOH A . D 4 HOH 129 429 133 HOH HOH A . D 4 HOH 130 430 134 HOH HOH A . D 4 HOH 131 431 135 HOH HOH A . D 4 HOH 132 432 136 HOH HOH A . D 4 HOH 133 433 137 HOH HOH A . D 4 HOH 134 434 138 HOH HOH A . D 4 HOH 135 435 139 HOH HOH A . D 4 HOH 136 436 140 HOH HOH A . D 4 HOH 137 437 142 HOH HOH A . D 4 HOH 138 438 143 HOH HOH A . D 4 HOH 139 439 144 HOH HOH A . D 4 HOH 140 440 145 HOH HOH A . D 4 HOH 141 441 146 HOH HOH A . D 4 HOH 142 442 147 HOH HOH A . D 4 HOH 143 443 149 HOH HOH A . D 4 HOH 144 444 150 HOH HOH A . D 4 HOH 145 445 151 HOH HOH A . D 4 HOH 146 446 152 HOH HOH A . D 4 HOH 147 447 153 HOH HOH A . D 4 HOH 148 448 154 HOH HOH A . D 4 HOH 149 449 155 HOH HOH A . D 4 HOH 150 450 156 HOH HOH A . D 4 HOH 151 451 157 HOH HOH A . D 4 HOH 152 452 158 HOH HOH A . D 4 HOH 153 453 159 HOH HOH A . D 4 HOH 154 454 160 HOH HOH A . D 4 HOH 155 455 161 HOH HOH A . D 4 HOH 156 456 162 HOH HOH A . D 4 HOH 157 457 163 HOH HOH A . D 4 HOH 158 458 164 HOH HOH A . D 4 HOH 159 459 165 HOH HOH A . D 4 HOH 160 460 166 HOH HOH A . D 4 HOH 161 461 167 HOH HOH A . D 4 HOH 162 462 168 HOH HOH A . E 4 HOH 1 28 28 HOH HOH B . E 4 HOH 2 33 33 HOH HOH B . E 4 HOH 3 83 83 HOH HOH B . E 4 HOH 4 141 141 HOH HOH B . E 4 HOH 5 148 148 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B TPO 3 B TPO 502 ? THR PHOSPHOTHREONINE 2 B NAL 5 B NAL 504 ? ALA 'BETA-(2-NAPHTHYL)-ALANINE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-26 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 AMoRE phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 334 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 421 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.93 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 112 ? ? -81.23 47.31 2 1 YCP B 503 ? ? -102.89 47.20 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B PHE 501 ? CB ? B PHE 2 CB 2 1 Y 1 B PHE 501 ? CG ? B PHE 2 CG 3 1 Y 1 B PHE 501 ? CD1 ? B PHE 2 CD1 4 1 Y 1 B PHE 501 ? CD2 ? B PHE 2 CD2 5 1 Y 1 B PHE 501 ? CE1 ? B PHE 2 CE1 6 1 Y 1 B PHE 501 ? CE2 ? B PHE 2 CE2 7 1 Y 1 B PHE 501 ? CZ ? B PHE 2 CZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A HIS -1 ? A HIS 3 4 1 Y 1 A GLY 0 ? A GLY 4 5 1 Y 1 A MET 1 ? A MET 5 6 1 Y 1 A ALA 2 ? A ALA 6 7 1 Y 1 A ASP 3 ? A ASP 7 8 1 Y 1 A GLU 4 ? A GLU 8 9 1 Y 1 A GLU 5 ? A GLU 9 10 1 Y 1 A LYS 6 ? A LYS 10 11 1 Y 1 A GLY 39 ? A GLY 43 12 1 Y 1 A ASN 40 ? A ASN 44 13 1 Y 1 A SER 41 ? A SER 45 14 1 Y 1 A SER 42 ? A SER 46 15 1 Y 1 A SER 43 ? A SER 47 16 1 Y 1 A GLY 44 ? A GLY 48 17 1 Y 1 A GLY 45 ? A GLY 49 18 1 Y 1 A LYS 46 ? A LYS 50 19 1 Y 1 A ASN 47 ? A ASN 51 20 1 Y 1 A GLY 48 ? A GLY 52 21 1 Y 1 A GLN 49 ? A GLN 53 22 1 Y 1 A GLY 50 ? A GLY 54 23 1 Y 1 B ACE 500 ? B ACE 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 3,6,9,12,15,18-HEXAOXAICOSANE 16P 4 water HOH #