HEADER ELECTRON TRANSPORT 31-MAY-07 2Q5B TITLE HIGH RESOLUTION STRUCTURE OF PLASTOCYANIN FROM PHORMIDIUM LAMINOSUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASTOCYANIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHORMIDIUM LAMINOSUM; SOURCE 3 GENE: PETE; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11PC KEYWDS PLASTOCYANIN, ELECTRON TRANSPORT, PHOTOSYSTEM 1 EXPDTA X-RAY DIFFRACTION AUTHOR R.FROMME,Y.S.BUKHMAN-DERUYTER,I.GROTJOHANN,H.MI,P.FROMME REVDAT 4 30-AUG-23 2Q5B 1 REMARK LINK REVDAT 3 13-JUL-11 2Q5B 1 VERSN REVDAT 2 24-FEB-09 2Q5B 1 VERSN REVDAT 1 17-JUN-08 2Q5B 0 JRNL AUTH Y.S.BUKHMAN-DERUYTER,R.FROMME,I.GROTJOHANN,B.SCHLARB-RIDLEY, JRNL AUTH 2 H.MI,P.FROMME JRNL TITL PLASTOCYANIN AT HIGH RESOLUTION FROM PHORMIDIUM LAMINOSUM JRNL TITL 2 AND THE DOUBLE MUTANT D44A, D45A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 54607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2920 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3615 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2415 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2501 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3402 ; 1.285 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 5.974 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;30.231 ;25.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;11.502 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;18.742 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1931 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1157 ; 0.262 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1656 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 241 ; 0.235 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 13 ; 0.060 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.775 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.044 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 0.867 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2548 ; 1.486 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 938 ; 2.207 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 3.124 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2513 ; 1.723 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 302 ; 2.739 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2432 ; 2.138 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 42.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.1 REMARK 200 STARTING MODEL: 1BAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CACODYLATE BUFFER (PH 6), 0.2 REMARK 280 M ZN ACETATE, 15% PEG 8000 , PH 6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.26800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.16450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.16450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.90200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.16450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.16450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.63400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.16450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.16450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.90200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.16450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.16450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.63400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.26800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS THE MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -42.16450 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 42.16450 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -22.63400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 84.32900 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -45.26800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 534 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -79.73 -117.55 REMARK 500 ASN B 34 -78.72 -111.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 HIS A 92 ND1 100.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 ASP A 45 OD1 86.6 REMARK 620 3 HOH A 613 O 146.0 85.4 REMARK 620 4 HIS B 61 NE2 107.2 92.5 106.1 REMARK 620 5 HOH B 507 O 86.8 168.7 94.9 98.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 N REMARK 620 2 THR A 86 O 102.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 NE2 REMARK 620 2 ASP C 44 OD1 105.4 REMARK 620 3 ASP C 45 OD1 95.6 86.1 REMARK 620 4 HOH C 505 O 109.4 144.8 85.5 REMARK 620 5 HOH C 511 O 94.4 91.1 170.0 91.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 88 OH REMARK 620 2 HOH A 607 O 93.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 39 ND1 REMARK 620 2 HIS B 92 ND1 102.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 45 OD1 REMARK 620 2 HIS C 61 NE2 134.2 REMARK 620 3 HOH C 595 O 109.6 116.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 39 ND1 REMARK 620 2 HIS C 92 ND1 97.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 44 N REMARK 620 2 THR C 86 O 103.8 REMARK 620 3 HOH C 513 O 143.7 106.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 104 OE2 REMARK 620 2 HOH C 582 O 100.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BAW RELATED DB: PDB REMARK 900 MEDIUM RESOLUTION STRUCTURE FROM PHORMIDIUM LAMINOSUM REMARK 900 RELATED ID: 1PLC RELATED DB: PDB REMARK 900 1.33 A RESOLUTION STRUCTURE FROM POPLAR REMARK 900 RELATED ID: 1BXV RELATED DB: PDB REMARK 900 REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP. (1.8A) REMARK 900 RELATED ID: 1BYP RELATED DB: PDB REMARK 900 E43K D44K DOUBLE MUTANT FROM PLASTOCYANIN FROM SILENE REMARK 900 RELATED ID: 1IUZ RELATED DB: PDB REMARK 900 ULVA PERTUSA PLASTOCYANIN AT 1.6-A REMARK 900 RELATED ID: 1PCS RELATED DB: PDB REMARK 900 TRIPLE MUTANT PLASTOCYANIN FROM THE CYANOBACTERIUM SYNECHOCYSTIS REMARK 900 SP. PCC6803 DBREF 2Q5B A 1 105 UNP Q51883 PLAS_PHOLA 35 139 DBREF 2Q5B B 1 105 UNP Q51883 PLAS_PHOLA 35 139 DBREF 2Q5B C 1 105 UNP Q51883 PLAS_PHOLA 35 139 SEQRES 1 A 105 GLU THR PHE THR VAL LYS MET GLY ALA ASP SER GLY LEU SEQRES 2 A 105 LEU GLN PHE GLU PRO ALA ASN VAL THR VAL HIS PRO GLY SEQRES 3 A 105 ASP THR VAL LYS TRP VAL ASN ASN LYS LEU PRO PRO HIS SEQRES 4 A 105 ASN ILE LEU PHE ASP ASP LYS GLN VAL PRO GLY ALA SER SEQRES 5 A 105 LYS GLU LEU ALA ASP LYS LEU SER HIS SER GLN LEU MET SEQRES 6 A 105 PHE SER PRO GLY GLU SER TYR GLU ILE THR PHE SER SER SEQRES 7 A 105 ASP PHE PRO ALA GLY THR TYR THR TYR TYR CYS ALA PRO SEQRES 8 A 105 HIS ARG GLY ALA GLY MET VAL GLY LYS ILE THR VAL GLU SEQRES 9 A 105 GLY SEQRES 1 B 105 GLU THR PHE THR VAL LYS MET GLY ALA ASP SER GLY LEU SEQRES 2 B 105 LEU GLN PHE GLU PRO ALA ASN VAL THR VAL HIS PRO GLY SEQRES 3 B 105 ASP THR VAL LYS TRP VAL ASN ASN LYS LEU PRO PRO HIS SEQRES 4 B 105 ASN ILE LEU PHE ASP ASP LYS GLN VAL PRO GLY ALA SER SEQRES 5 B 105 LYS GLU LEU ALA ASP LYS LEU SER HIS SER GLN LEU MET SEQRES 6 B 105 PHE SER PRO GLY GLU SER TYR GLU ILE THR PHE SER SER SEQRES 7 B 105 ASP PHE PRO ALA GLY THR TYR THR TYR TYR CYS ALA PRO SEQRES 8 B 105 HIS ARG GLY ALA GLY MET VAL GLY LYS ILE THR VAL GLU SEQRES 9 B 105 GLY SEQRES 1 C 105 GLU THR PHE THR VAL LYS MET GLY ALA ASP SER GLY LEU SEQRES 2 C 105 LEU GLN PHE GLU PRO ALA ASN VAL THR VAL HIS PRO GLY SEQRES 3 C 105 ASP THR VAL LYS TRP VAL ASN ASN LYS LEU PRO PRO HIS SEQRES 4 C 105 ASN ILE LEU PHE ASP ASP LYS GLN VAL PRO GLY ALA SER SEQRES 5 C 105 LYS GLU LEU ALA ASP LYS LEU SER HIS SER GLN LEU MET SEQRES 6 C 105 PHE SER PRO GLY GLU SER TYR GLU ILE THR PHE SER SER SEQRES 7 C 105 ASP PHE PRO ALA GLY THR TYR THR TYR TYR CYS ALA PRO SEQRES 8 C 105 HIS ARG GLY ALA GLY MET VAL GLY LYS ILE THR VAL GLU SEQRES 9 C 105 GLY HET CU A 106 1 HET ZN A 107 1 HET K A 502 1 HET K A 501 1 HET ACT A 601 4 HET CU B 106 1 HET ZN B 107 1 HET K B 502 1 HET CU C 106 1 HET ZN C 107 1 HET ZN C 108 1 HET K C 501 1 HET K C 502 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM ACT ACETATE ION FORMUL 4 CU 3(CU 2+) FORMUL 5 ZN 4(ZN 2+) FORMUL 6 K 5(K 1+) FORMUL 8 ACT C2 H3 O2 1- FORMUL 17 HOH *268(H2 O) HELIX 1 1 ASP A 45 ALA A 51 5 7 HELIX 2 2 SER A 52 SER A 60 1 9 HELIX 3 3 HIS A 92 GLY A 96 5 5 HELIX 4 4 VAL B 48 ALA B 51 5 4 HELIX 5 5 SER B 52 SER B 60 1 9 HELIX 6 6 HIS B 92 GLY B 96 5 5 HELIX 7 7 ASP C 45 ALA C 51 5 7 HELIX 8 8 SER C 52 SER C 60 1 9 HELIX 9 9 HIS C 92 GLY C 96 5 5 SHEET 1 A 4 PHE A 16 GLU A 17 0 SHEET 2 A 4 THR A 2 MET A 7 -1 N LYS A 6 O GLU A 17 SHEET 3 A 4 ASP A 27 ASN A 33 1 O LYS A 30 N VAL A 5 SHEET 4 A 4 SER A 71 PHE A 76 -1 O TYR A 72 N TRP A 31 SHEET 1 B 5 ASN A 20 VAL A 23 0 SHEET 2 B 5 VAL A 98 VAL A 103 1 O THR A 102 N VAL A 23 SHEET 3 B 5 GLY A 83 TYR A 88 -1 N GLY A 83 O VAL A 103 SHEET 4 B 5 HIS A 39 PHE A 43 -1 N LEU A 42 O TYR A 88 SHEET 5 B 5 HIS A 61 MET A 65 -1 O HIS A 61 N ILE A 41 SHEET 1 C 4 PHE B 16 GLU B 17 0 SHEET 2 C 4 THR B 2 MET B 7 -1 N LYS B 6 O GLU B 17 SHEET 3 C 4 THR B 28 ASN B 33 1 O THR B 28 N PHE B 3 SHEET 4 C 4 SER B 71 THR B 75 -1 O TYR B 72 N TRP B 31 SHEET 1 D 5 ASN B 20 VAL B 23 0 SHEET 2 D 5 VAL B 98 VAL B 103 1 O THR B 102 N VAL B 23 SHEET 3 D 5 GLY B 83 TYR B 88 -1 N TYR B 87 O GLY B 99 SHEET 4 D 5 HIS B 39 PHE B 43 -1 N LEU B 42 O TYR B 88 SHEET 5 D 5 HIS B 61 MET B 65 -1 O MET B 65 N HIS B 39 SHEET 1 E 4 PHE C 16 GLU C 17 0 SHEET 2 E 4 THR C 2 MET C 7 -1 N LYS C 6 O GLU C 17 SHEET 3 E 4 THR C 28 ASN C 33 1 O LYS C 30 N PHE C 3 SHEET 4 E 4 SER C 71 THR C 75 -1 O TYR C 72 N TRP C 31 SHEET 1 F 5 ASN C 20 VAL C 23 0 SHEET 2 F 5 VAL C 98 VAL C 103 1 O THR C 102 N VAL C 23 SHEET 3 F 5 GLY C 83 TYR C 88 -1 N GLY C 83 O VAL C 103 SHEET 4 F 5 HIS C 39 PHE C 43 -1 N LEU C 42 O TYR C 88 SHEET 5 F 5 HIS C 61 MET C 65 -1 O HIS C 61 N ILE C 41 LINK ND1 HIS A 39 CU CU A 106 1555 1555 2.05 LINK OD1 ASP A 44 ZN ZN A 107 1555 1555 2.01 LINK N ASP A 44 K K A 501 1555 1555 2.93 LINK OD1 ASP A 45 ZN ZN A 107 1555 1555 2.17 LINK NE2 HIS A 61 ZN ZN C 107 1555 1555 2.04 LINK O THR A 86 K K A 501 1555 1555 2.73 LINK OH TYR A 88 K K A 502 1555 1555 2.85 LINK ND1 HIS A 92 CU CU A 106 1555 1555 2.08 LINK ZN ZN A 107 O HOH A 613 1555 1555 1.95 LINK ZN ZN A 107 NE2 HIS B 61 1555 1555 2.06 LINK ZN ZN A 107 O HOH B 507 1555 1555 2.19 LINK K K A 502 O HOH A 607 1555 1555 2.76 LINK ND1 HIS B 39 CU CU B 106 1555 1555 2.04 LINK OD1 ASP B 45 ZN ZN B 107 1555 1555 2.04 LINK ND1 HIS B 92 CU CU B 106 1555 1555 2.05 LINK O VAL B 98 K K B 502 1555 1555 2.68 LINK ZN ZN B 107 NE2 HIS C 61 1555 1555 2.03 LINK ZN ZN B 107 O HOH C 595 1555 1555 2.05 LINK ND1 HIS C 39 CU CU C 106 1555 1555 2.04 LINK OD1 ASP C 44 ZN ZN C 107 1555 1555 2.00 LINK N ASP C 44 K K C 501 1555 1555 2.89 LINK OD1 ASP C 45 ZN ZN C 107 1555 1555 2.15 LINK O THR C 86 K K C 501 1555 1555 2.72 LINK ND1 HIS C 92 CU CU C 106 1555 1555 2.09 LINK O VAL C 98 K K C 502 1555 1555 2.66 LINK OE2 GLU C 104 ZN ZN C 108 1555 1555 2.03 LINK ZN ZN C 107 O HOH C 505 1555 1555 2.04 LINK ZN ZN C 107 O HOH C 511 1555 1555 2.16 LINK ZN ZN C 108 O HOH C 582 1555 1555 2.00 LINK K K C 501 O HOH C 513 1555 1555 2.73 CISPEP 1 GLU A 17 PRO A 18 0 -3.04 CISPEP 2 PRO A 37 PRO A 38 0 0.68 CISPEP 3 GLU B 17 PRO B 18 0 -0.03 CISPEP 4 PRO B 37 PRO B 38 0 5.01 CISPEP 5 GLU C 17 PRO C 18 0 -1.94 CISPEP 6 PRO C 37 PRO C 38 0 6.52 SITE 1 AC1 5 PRO A 38 HIS A 39 CYS A 89 HIS A 92 SITE 2 AC1 5 MET A 97 SITE 1 AC2 5 ASP A 44 ASP A 45 HOH A 613 HIS B 61 SITE 2 AC2 5 HOH B 507 SITE 1 AC3 4 HIS B 39 CYS B 89 HIS B 92 MET B 97 SITE 1 AC4 3 ASP B 45 HIS C 61 HOH C 595 SITE 1 AC5 4 HIS C 39 CYS C 89 HIS C 92 MET C 97 SITE 1 AC6 5 HIS A 61 ASP C 44 ASP C 45 HOH C 505 SITE 2 AC6 5 HOH C 511 SITE 1 AC7 5 HIS A 24 GLU A 104 HIS C 24 GLU C 104 SITE 2 AC7 5 HOH C 582 SITE 1 AC8 3 GLN B 15 PHE B 16 GLY B 96 SITE 1 AC9 6 LEU C 42 ASP C 44 GLN C 47 THR C 86 SITE 2 AC9 6 TYR C 88 HOH C 513 SITE 1 BC1 4 TYR A 88 HOH A 607 GLN B 63 LEU B 64 SITE 1 BC2 6 LEU A 42 PHE A 43 ASP A 44 GLN A 47 SITE 2 BC2 6 THR A 86 TYR A 88 SITE 1 BC3 2 GLN C 15 PHE C 16 SITE 1 BC4 4 LEU A 64 GLU A 70 ASP C 44 ARG C 93 CRYST1 84.329 84.329 90.536 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011045 0.00000