HEADER HYDROLASE 04-JUN-07 2Q5Z TITLE CRYSTAL STRUCTURE OF IMAZG FROM VIBRIO DAT 722: NTAG-IMAZG (P43212) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAZG; COMPND 5 EC: 3.6.1.19; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO SP. DAT722; SOURCE 3 ORGANISM_TAXID: 344879; SOURCE 4 STRAIN: DAT 722; SOURCE 5 GENE: IMAZG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 15B KEYWDS MAZG, VIBRIO, NTP-PPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ROBINSON,A.P.GUILFOYLE,S.J.HARROP,Y.BOUCHER,H.W.STOKES,P.M.G.CURMI, AUTHOR 2 B.C.MABBUTT REVDAT 7 30-AUG-23 2Q5Z 1 REMARK REVDAT 6 20-OCT-21 2Q5Z 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 2Q5Z 1 VERSN REVDAT 4 24-FEB-09 2Q5Z 1 VERSN REVDAT 3 06-NOV-07 2Q5Z 1 JRNL REVDAT 2 30-OCT-07 2Q5Z 1 JRNL REVDAT 1 09-OCT-07 2Q5Z 0 JRNL AUTH A.ROBINSON,A.P.GUILFOYLE,S.J.HARROP,Y.BOUCHER,H.W.STOKES, JRNL AUTH 2 P.M.CURMI,B.C.MABBUTT JRNL TITL A PUTATIVE HOUSE-CLEANING ENZYME ENCODED WITHIN AN INTEGRON JRNL TITL 2 ARRAY: 1.8 A CRYSTAL STRUCTURE DEFINES A NEW MAZG SUBTYPE. JRNL REF MOL.MICROBIOL. V. 66 610 2007 JRNL REFN ISSN 0950-382X JRNL PMID 17892463 JRNL DOI 10.1111/J.1365-2958.2007.05932.X REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1044 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.152 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1586 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2131 ; 1.453 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 191 ; 5.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;35.089 ;25.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 311 ;14.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;10.542 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 230 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1177 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 730 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1081 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.129 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 974 ; 0.649 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1510 ; 1.064 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 697 ; 1.948 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 618 ; 3.058 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 90 1 REMARK 3 1 B 1 B 90 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 711 ; .55 ; .50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 711 ; .73 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2706 20.4302 68.4472 REMARK 3 T TENSOR REMARK 3 T11: -.1377 T22: -.2333 REMARK 3 T33: -.2421 T12: -.0123 REMARK 3 T13: -.0622 T23: .0062 REMARK 3 L TENSOR REMARK 3 L11: 4.2413 L22: 2.6838 REMARK 3 L33: 2.7651 L12: .9544 REMARK 3 L13: -.2133 L23: -.7177 REMARK 3 S TENSOR REMARK 3 S11: -.0635 S12: .2235 S13: -.1398 REMARK 3 S21: -.3382 S22: .0833 S23: .2032 REMARK 3 S31: .1273 S32: -.2793 S33: -.0198 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3756 26.5375 70.1061 REMARK 3 T TENSOR REMARK 3 T11: -.1897 T22: -.2145 REMARK 3 T33: -.2064 T12: .0242 REMARK 3 T13: -.0854 T23: .0328 REMARK 3 L TENSOR REMARK 3 L11: 1.7457 L22: 2.6030 REMARK 3 L33: 1.8679 L12: .5056 REMARK 3 L13: -.2284 L23: .0974 REMARK 3 S TENSOR REMARK 3 S11: -.0092 S12: .1297 S13: .1560 REMARK 3 S21: -.2316 S22: .0151 S23: .1410 REMARK 3 S31: -.2812 S32: -.1790 S33: -.0059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 17.173 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 32.10 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 39.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 32.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : 0.48300 REMARK 200 FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1VMG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 8% PEG 8000, REMARK 280 0.1M NACL, PH 5.50, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.61350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.66650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.66650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.42025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.66650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.66650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.80675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.66650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.66650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.42025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.66650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.66650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.80675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.61350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE OPERATION: Y, X, -Z, 0, 0, 1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 163.22700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASN A 93 REMARK 465 ARG A 94 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 85 O HOH B 523 5545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 92 C TYR A 92 O 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 30 OE1 REMARK 620 2 GLU A 33 OE1 97.7 REMARK 620 3 GLU A 58 OE1 108.1 92.0 REMARK 620 4 ASP A 61 OD2 86.9 172.6 92.0 REMARK 620 5 HOH A 608 O 170.4 76.9 80.3 97.6 REMARK 620 6 HOH A 611 O 88.1 90.8 163.0 83.6 83.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 30 OE1 REMARK 620 2 GLU B 33 OE1 96.3 REMARK 620 3 GLU B 58 OE1 109.8 93.2 REMARK 620 4 ASP B 61 OD2 90.1 169.3 92.6 REMARK 620 5 HOH B 543 O 164.2 79.2 85.7 92.3 REMARK 620 6 HOH B 548 O 73.7 98.2 167.7 75.4 91.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q73 RELATED DB: PDB DBREF 2Q5Z A 1 94 UNP Q2F9Z1 Q2F9Z1_9VIBR 1 94 DBREF 2Q5Z B 1 94 UNP Q2F9Z1 Q2F9Z1_9VIBR 1 94 SEQADV 2Q5Z MET A -19 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z GLY A -18 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER A -17 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER A -16 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS A -15 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS A -14 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS A -13 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS A -12 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS A -11 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS A -10 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER A -9 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER A -8 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z GLY A -7 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z LEU A -6 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z VAL A -5 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z PRO A -4 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z ARG A -3 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z GLY A -2 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER A -1 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS A 0 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z ARG A 81 UNP Q2F9Z1 HIS 81 ENGINEERED MUTATION SEQADV 2Q5Z MET B -19 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z GLY B -18 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER B -17 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER B -16 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS B -15 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS B -14 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS B -13 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS B -12 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS B -11 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS B -10 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER B -9 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER B -8 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z GLY B -7 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z LEU B -6 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z VAL B -5 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z PRO B -4 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z ARG B -3 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z GLY B -2 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z SER B -1 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z HIS B 0 UNP Q2F9Z1 EXPRESSION TAG SEQADV 2Q5Z ARG B 81 UNP Q2F9Z1 HIS 81 ENGINEERED MUTATION SEQRES 1 A 114 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 114 LEU VAL PRO ARG GLY SER HIS MET LYS LEU SER GLU LEU SEQRES 3 A 114 GLN SER HIS ILE LYS GLU PHE ASP TYR ALA PRO GLU GLN SEQRES 4 A 114 SER GLU HIS TYR PHE PHE LYS LEU ILE GLU GLU VAL GLY SEQRES 5 A 114 GLU LEU SER GLU SER ILE ARG LYS GLY LYS SER GLY GLN SEQRES 6 A 114 PRO THR LEU ASP GLU LEU LYS GLY SER VAL ALA GLU GLU SEQRES 7 A 114 LEU TYR ASP VAL LEU TYR TYR VAL CYS ALA LEU ALA ASN SEQRES 8 A 114 ILE HIS GLY VAL ASN LEU GLU LYS THR ARG GLU LEU LYS SEQRES 9 A 114 GLU VAL LEU ASN LYS VAL LYS TYR ASN ARG SEQRES 1 B 114 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 114 LEU VAL PRO ARG GLY SER HIS MET LYS LEU SER GLU LEU SEQRES 3 B 114 GLN SER HIS ILE LYS GLU PHE ASP TYR ALA PRO GLU GLN SEQRES 4 B 114 SER GLU HIS TYR PHE PHE LYS LEU ILE GLU GLU VAL GLY SEQRES 5 B 114 GLU LEU SER GLU SER ILE ARG LYS GLY LYS SER GLY GLN SEQRES 6 B 114 PRO THR LEU ASP GLU LEU LYS GLY SER VAL ALA GLU GLU SEQRES 7 B 114 LEU TYR ASP VAL LEU TYR TYR VAL CYS ALA LEU ALA ASN SEQRES 8 B 114 ILE HIS GLY VAL ASN LEU GLU LYS THR ARG GLU LEU LYS SEQRES 9 B 114 GLU VAL LEU ASN LYS VAL LYS TYR ASN ARG HET MG A 501 1 HET GOL A 601 6 HET GOL A 602 6 HET MG B 502 1 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *92(H2 O) HELIX 1 1 LYS A 2 ASP A 14 1 13 HELIX 2 2 ALA A 16 GLU A 18 5 3 HELIX 3 3 GLN A 19 LYS A 40 1 22 HELIX 4 4 THR A 47 LEU A 51 5 5 HELIX 5 5 SER A 54 HIS A 73 1 20 HELIX 6 6 ASN A 76 VAL A 90 1 15 HELIX 7 7 LYS B 2 ASP B 14 1 13 HELIX 8 8 ALA B 16 GLU B 18 5 3 HELIX 9 9 GLN B 19 LYS B 40 1 22 HELIX 10 10 SER B 54 HIS B 73 1 20 HELIX 11 11 ASN B 76 ASN B 93 1 18 LINK OE1 GLU A 30 MG MG A 501 1555 1555 2.27 LINK OE1 GLU A 33 MG MG A 501 1555 1555 2.29 LINK OE1 GLU A 58 MG MG A 501 1555 1555 2.35 LINK OD2 ASP A 61 MG MG A 501 1555 1555 2.36 LINK MG MG A 501 O HOH A 608 1555 1555 2.72 LINK MG MG A 501 O HOH A 611 1555 1555 2.64 LINK OE1 GLU B 30 MG MG B 502 1555 1555 2.27 LINK OE1 GLU B 33 MG MG B 502 1555 1555 2.21 LINK OE1 GLU B 58 MG MG B 502 1555 1555 2.19 LINK OD2 ASP B 61 MG MG B 502 1555 1555 2.37 LINK MG MG B 502 O HOH B 543 1555 1555 2.72 LINK MG MG B 502 O HOH B 548 1555 1555 2.83 CISPEP 1 LYS A 91 TYR A 92 0 -1.06 SITE 1 AC1 6 GLU A 30 GLU A 33 GLU A 58 ASP A 61 SITE 2 AC1 6 HOH A 608 HOH A 611 SITE 1 AC2 6 GLU B 30 GLU B 33 GLU B 58 ASP B 61 SITE 2 AC2 6 HOH B 543 HOH B 548 SITE 1 AC3 4 ASP A 14 ALA A 16 GLN A 19 HIS A 22 SITE 1 AC4 5 TYR A 60 ASP A 61 TYR A 64 TYR A 65 SITE 2 AC4 5 LYS B 84 CRYST1 63.333 63.333 163.227 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006126 0.00000