HEADER TRANSFERASE/RNA 04-JUN-07 2Q66 TITLE STRUCTURE OF YEAST POLY(A) POLYMERASE WITH ATP AND OLIGO(A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(P*AP*AP*AP*AP*A)-3'; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLY(A) POLYMERASE; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: PAP, POLYNUCLEOTIDE ADENYLYLTRANSFERASE; COMPND 9 EC: 2.7.7.19; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 6 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 7 ORGANISM_TAXID: 4932; SOURCE 8 GENE: PAP1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN RNA COMPLEX ATP POLYMERASE COMPLEX, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BOHM,P.BALBO REVDAT 6 30-AUG-23 2Q66 1 REMARK REVDAT 5 20-OCT-21 2Q66 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2Q66 1 REMARK REVDAT 3 24-FEB-09 2Q66 1 VERSN REVDAT 2 30-OCT-07 2Q66 1 JRNL REVDAT 1 28-AUG-07 2Q66 0 JRNL AUTH P.B.BALBO,A.BOHM JRNL TITL MECHANISM OF POLY(A) POLYMERASE: STRUCTURE OF THE JRNL TITL 2 ENZYME-MGATP-RNA TERNARY COMPLEX AND KINETIC ANALYSIS. JRNL REF STRUCTURE V. 15 1117 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850751 JRNL DOI 10.1016/J.STR.2007.07.010 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 56560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2988 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4152 REMARK 3 NUCLEIC ACID ATOMS : 110 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 509 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.642 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4663 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6361 ; 1.244 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 579 ; 5.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;35.465 ;24.434 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 812 ;14.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.581 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 712 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3469 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2454 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3197 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 442 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2793 ; 0.825 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4417 ; 1.121 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2162 ; 1.762 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1914 ; 2.548 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56633 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 2HHP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: .1M BIS TRIS PROPANE PH 6.4, .2M LI REMARK 280 ACETATE, 16% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.81650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.73450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.95350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.73450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.81650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.95350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 448 REMARK 465 GLU A 473 REMARK 465 ASN A 474 REMARK 465 LYS A 475 REMARK 465 LYS A 476 REMARK 465 GLU A 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 ASN A 179 CG OD1 ND2 REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 ILE A 472 CG1 CG2 CD1 REMARK 470 ASN A 496 CG OD1 ND2 REMARK 470 GLU A 524 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 965 O HOH A 1178 4456 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 337 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 419 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 480 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 70 30.98 -94.60 REMARK 500 THR A 118 -68.13 -108.28 REMARK 500 ALA A 225 98.04 169.55 REMARK 500 ASN A 288 98.07 -161.29 REMARK 500 SER A 494 55.44 -96.33 REMARK 500 ASN A 496 -64.87 -108.56 REMARK 500 ARG A 528 133.35 -30.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 100 OD1 REMARK 620 2 ASP A 102 OD2 93.9 REMARK 620 3 ATP A 605 O1G 94.4 171.7 REMARK 620 4 ATP A 605 O1B 172.5 85.3 86.4 REMARK 620 5 ATP A 605 O1A 100.0 86.1 92.9 87.4 REMARK 620 6 HOH A1097 O 84.2 88.3 92.1 88.4 173.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 717 DBREF 2Q66 A 5 529 UNP P29468 PAP_YEAST 5 529 DBREF 2Q66 X 1 5 PDB 2Q66 2Q66 1 5 SEQADV 2Q66 ALA A 154 UNP P29468 ASP 154 ENGINEERED MUTATION SEQRES 1 X 5 A A A A A SEQRES 1 A 525 LYS VAL PHE GLY ILE THR GLY PRO VAL SER THR VAL GLY SEQRES 2 A 525 ALA THR ALA ALA GLU ASN LYS LEU ASN ASP SER LEU ILE SEQRES 3 A 525 GLN GLU LEU LYS LYS GLU GLY SER PHE GLU THR GLU GLN SEQRES 4 A 525 GLU THR ALA ASN ARG VAL GLN VAL LEU LYS ILE LEU GLN SEQRES 5 A 525 GLU LEU ALA GLN ARG PHE VAL TYR GLU VAL SER LYS LYS SEQRES 6 A 525 LYS ASN MET SER ASP GLY MET ALA ARG ASP ALA GLY GLY SEQRES 7 A 525 LYS ILE PHE THR TYR GLY SER TYR ARG LEU GLY VAL HIS SEQRES 8 A 525 GLY PRO GLY SER ASP ILE ASP THR LEU VAL VAL VAL PRO SEQRES 9 A 525 LYS HIS VAL THR ARG GLU ASP PHE PHE THR VAL PHE ASP SEQRES 10 A 525 SER LEU LEU ARG GLU ARG LYS GLU LEU ASP GLU ILE ALA SEQRES 11 A 525 PRO VAL PRO ASP ALA PHE VAL PRO ILE ILE LYS ILE LYS SEQRES 12 A 525 PHE SER GLY ILE SER ILE ALA LEU ILE CYS ALA ARG LEU SEQRES 13 A 525 ASP GLN PRO GLN VAL PRO LEU SER LEU THR LEU SER ASP SEQRES 14 A 525 LYS ASN LEU LEU ARG ASN LEU ASP GLU LYS ASP LEU ARG SEQRES 15 A 525 ALA LEU ASN GLY THR ARG VAL THR ASP GLU ILE LEU GLU SEQRES 16 A 525 LEU VAL PRO LYS PRO ASN VAL PHE ARG ILE ALA LEU ARG SEQRES 17 A 525 ALA ILE LYS LEU TRP ALA GLN ARG ARG ALA VAL TYR ALA SEQRES 18 A 525 ASN ILE PHE GLY PHE PRO GLY GLY VAL ALA TRP ALA MET SEQRES 19 A 525 LEU VAL ALA ARG ILE CYS GLN LEU TYR PRO ASN ALA CYS SEQRES 20 A 525 SER ALA VAL ILE LEU ASN ARG PHE PHE ILE ILE LEU SER SEQRES 21 A 525 GLU TRP ASN TRP PRO GLN PRO VAL ILE LEU LYS PRO ILE SEQRES 22 A 525 GLU ASP GLY PRO LEU GLN VAL ARG VAL TRP ASN PRO LYS SEQRES 23 A 525 ILE TYR ALA GLN ASP ARG SER HIS ARG MET PRO VAL ILE SEQRES 24 A 525 THR PRO ALA TYR PRO SER MET CYS ALA THR HIS ASN ILE SEQRES 25 A 525 THR GLU SER THR LYS LYS VAL ILE LEU GLN GLU PHE VAL SEQRES 26 A 525 ARG GLY VAL GLN ILE THR ASN ASP ILE PHE SER ASN LYS SEQRES 27 A 525 LYS SER TRP ALA ASN LEU PHE GLU LYS ASN ASP PHE PHE SEQRES 28 A 525 PHE ARG TYR LYS PHE TYR LEU GLU ILE THR ALA TYR THR SEQRES 29 A 525 ARG GLY SER ASP GLU GLN HIS LEU LYS TRP SER GLY LEU SEQRES 30 A 525 VAL GLU SER LYS VAL ARG LEU LEU VAL MET LYS LEU GLU SEQRES 31 A 525 VAL LEU ALA GLY ILE LYS ILE ALA HIS PRO PHE THR LYS SEQRES 32 A 525 PRO PHE GLU SER SER TYR CYS CYS PRO THR GLU ASP ASP SEQRES 33 A 525 TYR GLU MET ILE GLN ASP LYS TYR GLY SER HIS LYS THR SEQRES 34 A 525 GLU THR ALA LEU ASN ALA LEU LYS LEU VAL THR ASP GLU SEQRES 35 A 525 ASN LYS GLU GLU GLU SER ILE LYS ASP ALA PRO LYS ALA SEQRES 36 A 525 TYR LEU SER THR MET TYR ILE GLY LEU ASP PHE ASN ILE SEQRES 37 A 525 GLU ASN LYS LYS GLU LYS VAL ASP ILE HIS ILE PRO CYS SEQRES 38 A 525 THR GLU PHE VAL ASN LEU CYS ARG SER PHE ASN GLU ASP SEQRES 39 A 525 TYR GLY ASP HIS LYS VAL PHE ASN LEU ALA LEU ARG PHE SEQRES 40 A 525 VAL LYS GLY TYR ASP LEU PRO ASP GLU VAL PHE ASP GLU SEQRES 41 A 525 ASN GLU LYS ARG PRO HET EDO X 709 4 HET EDO X 715 4 HET MG A 602 1 HET ATP A 605 31 HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HET EDO A 708 4 HET EDO A 710 4 HET EDO A 711 4 HET EDO A 712 4 HET EDO A 713 4 HET EDO A 714 4 HET EDO A 716 4 HET EDO A 717 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 17(C2 H6 O2) FORMUL 5 MG MG 2+ FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 22 HOH *509(H2 O) HELIX 1 1 THR A 19 GLU A 36 1 18 HELIX 2 2 THR A 41 LYS A 70 1 30 HELIX 3 3 SER A 73 ALA A 80 1 8 HELIX 4 4 GLY A 88 GLY A 93 1 6 HELIX 5 5 THR A 112 GLU A 126 1 15 HELIX 6 6 ASP A 173 ARG A 178 5 6 HELIX 7 7 ASP A 181 LEU A 200 1 20 HELIX 8 8 LYS A 203 ARG A 221 1 19 HELIX 9 9 ALA A 225 GLY A 229 5 5 HELIX 10 10 GLY A 232 TYR A 247 1 16 HELIX 11 11 CYS A 251 TRP A 266 1 16 HELIX 12 12 TYR A 292 SER A 297 1 6 HELIX 13 13 THR A 317 SER A 340 1 24 HELIX 14 14 SER A 344 PHE A 349 1 6 HELIX 15 15 ASP A 353 TYR A 358 1 6 HELIX 16 16 SER A 371 VAL A 395 1 25 HELIX 17 17 THR A 417 TYR A 428 1 12 HELIX 18 18 THR A 433 ASN A 438 5 6 HELIX 19 19 GLU A 450 ALA A 456 1 7 HELIX 20 20 ILE A 481 SER A 494 1 14 HELIX 21 21 TYR A 515 LEU A 517 5 3 HELIX 22 22 PRO A 518 PHE A 522 5 5 SHEET 1 A 5 LYS A 83 TYR A 87 0 SHEET 2 A 5 ILE A 101 VAL A 107 -1 O LEU A 104 N PHE A 85 SHEET 3 A 5 ILE A 151 ARG A 159 1 O ALA A 154 N THR A 103 SHEET 4 A 5 ILE A 143 PHE A 148 -1 N ILE A 146 O ILE A 153 SHEET 5 A 5 LEU A 130 VAL A 136 -1 N VAL A 136 O ILE A 143 SHEET 1 B 2 VAL A 272 ILE A 273 0 SHEET 2 B 2 VAL A 302 ILE A 303 1 O ILE A 303 N VAL A 272 SHEET 1 C 3 ILE A 399 PRO A 404 0 SHEET 2 C 3 LYS A 458 PHE A 470 -1 O GLY A 467 N HIS A 403 SHEET 3 C 3 PHE A 409 CYS A 414 -1 N SER A 411 O LEU A 461 SHEET 1 D 4 ILE A 399 PRO A 404 0 SHEET 2 D 4 LYS A 458 PHE A 470 -1 O GLY A 467 N HIS A 403 SHEET 3 D 4 PHE A 360 ARG A 369 -1 N ILE A 364 O MET A 464 SHEET 4 D 4 PHE A 505 LYS A 513 -1 O VAL A 512 N TYR A 361 LINK OD1 ASP A 100 MG MG A 602 1555 1555 2.03 LINK OD2 ASP A 102 MG MG A 602 1555 1555 2.12 LINK MG MG A 602 O1G ATP A 605 1555 1555 2.02 LINK MG MG A 602 O1B ATP A 605 1555 1555 2.07 LINK MG MG A 602 O1A ATP A 605 1555 1555 2.10 LINK MG MG A 602 O HOH A1097 1555 1555 2.16 CISPEP 1 TRP A 268 PRO A 269 0 8.11 CISPEP 2 TYR A 307 PRO A 308 0 -6.25 CISPEP 3 ASN A 438 ALA A 439 0 3.55 CISPEP 4 PHE A 495 ASN A 496 0 -6.40 SITE 1 AC1 4 ASP A 100 ASP A 102 ATP A 605 HOH A1097 SITE 1 AC2 26 TYR A 87 GLY A 88 SER A 89 ASP A 100 SITE 2 AC2 26 ASP A 102 GLY A 190 LYS A 215 TYR A 224 SITE 3 AC2 26 ASN A 226 GLY A 233 VAL A 234 MET A 310 SITE 4 AC2 26 ALA A 312 MG A 602 HOH A 727 HOH A 817 SITE 5 AC2 26 HOH A 872 HOH A 880 HOH A 896 HOH A 919 SITE 6 AC2 26 HOH A 920 HOH A 966 HOH A1000 HOH A1088 SITE 7 AC2 26 HOH A1097 A X 5 SITE 1 AC3 9 LYS A 53 GLN A 56 GLU A 57 GLN A 60 SITE 2 AC3 9 TYR A 247 ARG A 258 ILE A 262 HOH A 827 SITE 3 AC3 9 HOH A1142 SITE 1 AC4 6 VAL A 16 ALA A 250 ARG A 258 HOH A 820 SITE 2 AC4 6 HOH A 911 HOH A 980 SITE 1 AC5 5 LYS A 34 PHE A 39 GLU A 418 HOH A 733 SITE 2 AC5 5 HOH A 755 SITE 1 AC6 5 ASN A 23 ASN A 26 ASP A 27 CYS A 251 SITE 2 AC6 5 HOH A 805 SITE 1 AC7 5 SER A 28 SER A 344 TRP A 345 HOH A 921 SITE 2 AC7 5 HOH A1013 SITE 1 AC8 4 PRO A 276 ILE A 277 HOH A 746 HOH A 764 SITE 1 AC9 5 GLU A 132 ILE A 146 LYS A 147 HOH A 731 SITE 2 AC9 5 HOH A 768 SITE 1 BC1 4 GLN A 60 TYR A 64 ARG A 78 GLY A 81 SITE 1 BC2 1 A X 2 SITE 1 BC3 7 LYS A 351 LYS A 407 PHE A 409 VAL A 521 SITE 2 BC3 7 ASP A 523 HOH A 960 HOH A1018 SITE 1 BC4 4 ARG A 221 LYS A 351 ASP A 353 HOH A1071 SITE 1 BC5 6 GLU A 32 GLU A 36 ARG A 220 ALA A 346 SITE 2 BC5 6 PHE A 349 GLU A 350 SITE 1 BC6 4 VAL A 16 GLY A 17 ALA A 18 ASP A 455 SITE 1 BC7 7 VAL A 49 LYS A 53 GLU A 265 ASN A 267 SITE 2 BC7 7 HOH A 791 HOH A 810 HOH A 925 SITE 1 BC8 4 ALA A 139 PHE A 140 HOH A1054 A X 4 SITE 1 BC9 4 PHE A 470 LYS A 478 VAL A 479 A X 1 SITE 1 CC1 4 SER A 168 VAL A 329 HOH A 765 HOH A 944 CRYST1 67.633 85.907 107.469 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014786 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009305 0.00000