HEADER PROTEIN BINDING 06-JUN-07 2Q7F TITLE CRYSTAL STRUCTURE OF YRRB: A TPR PROTEIN WITH AN UNUSUAL PEPTIDE- TITLE 2 BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YRRB PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 4-202; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YRRB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 28A(+) KEYWDS TPR, YRRB, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.OH,D.HAN,K.KIM,H.LIM REVDAT 5 21-FEB-24 2Q7F 1 SEQADV REVDAT 4 13-JUL-11 2Q7F 1 VERSN REVDAT 3 16-FEB-10 2Q7F 1 SOURCE REVDAT 2 24-FEB-09 2Q7F 1 VERSN REVDAT 1 07-AUG-07 2Q7F 0 JRNL AUTH D.HAN,J.OH,K.KIM,H.LIM,Y.KIM JRNL TITL CRYSTAL STRUCTURE OF YRRB: A TPR PROTEIN WITH AN UNUSUAL JRNL TITL 2 PEPTIDE-BINDING SITE JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 360 784 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17624311 JRNL DOI 10.1016/J.BBRC.2007.06.129 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 13328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3048 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.004 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 4.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;42.268 ;25.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;18.991 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2380 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1555 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2170 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1977 ; 0.435 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3056 ; 0.802 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1264 ; 1.043 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1134 ; 1.776 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 43 A 236 5 REMARK 3 1 B 43 B 236 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 776 ; 0.36 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 749 ; 0.70 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 776 ; 0.67 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 749 ; 1.23 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 61 REMARK 3 RESIDUE RANGE : A 62 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1967 52.5303 15.6273 REMARK 3 T TENSOR REMARK 3 T11: 0.0051 T22: 0.0478 REMARK 3 T33: -0.0250 T12: 0.0316 REMARK 3 T13: -0.0127 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.0985 L22: 3.5509 REMARK 3 L33: 0.1411 L12: -0.3602 REMARK 3 L13: 0.0810 L23: 0.0604 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.2691 S13: -0.3028 REMARK 3 S21: -0.0852 S22: 0.0586 S23: 0.0824 REMARK 3 S31: 0.0827 S32: 0.1170 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 61 REMARK 3 RESIDUE RANGE : B 62 B 236 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9832 74.0946 40.2465 REMARK 3 T TENSOR REMARK 3 T11: -0.0869 T22: -0.0323 REMARK 3 T33: -0.1335 T12: 0.0354 REMARK 3 T13: -0.0244 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.9785 L22: 2.1922 REMARK 3 L33: 1.8062 L12: -0.1655 REMARK 3 L13: -0.1740 L23: -1.4279 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: -0.0899 S13: 0.1993 REMARK 3 S21: -0.0158 S22: 0.0044 S23: 0.0161 REMARK 3 S31: 0.0208 S32: 0.0852 S33: 0.0322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14817 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MM PHOTASSIUM PHOSPHATE(KH2PO4), 4% REMARK 280 PEG 6000, 20% GLYCEROL, PH 4.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, PH 4.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.46900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.56950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.46900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.56950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 HIS A 21 REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 MET A 25 REMARK 465 THR A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 28 REMARK 465 GLN A 29 REMARK 465 GLN A 30 REMARK 465 MET A 31 REMARK 465 GLY A 32 REMARK 465 ARG A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 GLU A 36 REMARK 465 PHE A 37 REMARK 465 GLY A 38 REMARK 465 ASP A 39 REMARK 465 TYR A 40 REMARK 465 GLU A 41 REMARK 465 LYS A 42 REMARK 465 LEU A 237 REMARK 465 GLY A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 MET B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 GLY B 14 REMARK 465 LEU B 15 REMARK 465 VAL B 16 REMARK 465 PRO B 17 REMARK 465 ARG B 18 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 HIS B 21 REMARK 465 MET B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 MET B 25 REMARK 465 THR B 26 REMARK 465 GLY B 27 REMARK 465 GLY B 28 REMARK 465 GLN B 29 REMARK 465 GLN B 30 REMARK 465 MET B 31 REMARK 465 GLY B 32 REMARK 465 ARG B 33 REMARK 465 GLY B 34 REMARK 465 SER B 35 REMARK 465 GLU B 36 REMARK 465 PHE B 37 REMARK 465 GLY B 38 REMARK 465 ASP B 39 REMARK 465 TYR B 40 REMARK 465 GLU B 41 REMARK 465 LYS B 42 REMARK 465 LEU B 237 REMARK 465 GLY B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 136 O GLU B 140 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 210 CB - CA - C ANGL. DEV. = -26.7 DEGREES REMARK 500 ALA B 46 CB - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 ASP B 57 CB - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 ALA B 58 CB - CA - C ANGL. DEV. = -10.3 DEGREES REMARK 500 GLU B 215 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 44 -98.83 -141.83 REMARK 500 GLU A 45 -161.00 -41.38 REMARK 500 ALA A 46 -66.64 75.56 REMARK 500 GLU A 53 -5.74 68.91 REMARK 500 LYS A 55 -24.33 -39.21 REMARK 500 GLU A 140 -131.96 64.81 REMARK 500 GLN A 141 42.78 34.09 REMARK 500 LYS A 143 -15.88 -36.08 REMARK 500 ASP A 159 85.69 -69.87 REMARK 500 GLU A 208 66.41 63.42 REMARK 500 GLU A 211 -82.94 -91.85 REMARK 500 ALA B 44 -8.85 67.50 REMARK 500 ALA B 46 2.47 86.65 REMARK 500 LYS B 55 10.82 -66.96 REMARK 500 ALA B 58 -3.62 82.10 REMARK 500 GLU B 73 66.68 -108.64 REMARK 500 MET B 107 75.35 -115.33 REMARK 500 GLU B 140 -126.75 53.65 REMARK 500 ASN B 209 78.86 -114.86 REMARK 500 GLU B 215 -9.84 85.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 44 GLU A 45 -149.03 REMARK 500 GLU B 215 MET B 216 146.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 2Q7F A 38 236 UNP O34452 O34452_BACSU 4 202 DBREF 2Q7F B 38 236 UNP O34452 O34452_BACSU 4 202 SEQADV 2Q7F MET A 2 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY A 3 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER A 4 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER A 5 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 6 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 7 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 8 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 9 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 10 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 11 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER A 12 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER A 13 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY A 14 UNP O34452 EXPRESSION TAG SEQADV 2Q7F LEU A 15 UNP O34452 EXPRESSION TAG SEQADV 2Q7F VAL A 16 UNP O34452 EXPRESSION TAG SEQADV 2Q7F PRO A 17 UNP O34452 EXPRESSION TAG SEQADV 2Q7F ARG A 18 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY A 19 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER A 20 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 21 UNP O34452 EXPRESSION TAG SEQADV 2Q7F MET A 22 UNP O34452 EXPRESSION TAG SEQADV 2Q7F ALA A 23 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER A 24 UNP O34452 EXPRESSION TAG SEQADV 2Q7F MET A 25 UNP O34452 EXPRESSION TAG SEQADV 2Q7F THR A 26 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY A 27 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY A 28 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLN A 29 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLN A 30 UNP O34452 EXPRESSION TAG SEQADV 2Q7F MET A 31 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY A 32 UNP O34452 EXPRESSION TAG SEQADV 2Q7F ARG A 33 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY A 34 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER A 35 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLU A 36 UNP O34452 EXPRESSION TAG SEQADV 2Q7F PHE A 37 UNP O34452 EXPRESSION TAG SEQADV 2Q7F LEU A 237 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY A 238 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 239 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 240 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 241 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 242 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 243 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS A 244 UNP O34452 EXPRESSION TAG SEQADV 2Q7F MET B 2 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY B 3 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER B 4 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER B 5 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 6 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 7 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 8 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 9 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 10 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 11 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER B 12 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER B 13 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY B 14 UNP O34452 EXPRESSION TAG SEQADV 2Q7F LEU B 15 UNP O34452 EXPRESSION TAG SEQADV 2Q7F VAL B 16 UNP O34452 EXPRESSION TAG SEQADV 2Q7F PRO B 17 UNP O34452 EXPRESSION TAG SEQADV 2Q7F ARG B 18 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY B 19 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER B 20 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 21 UNP O34452 EXPRESSION TAG SEQADV 2Q7F MET B 22 UNP O34452 EXPRESSION TAG SEQADV 2Q7F ALA B 23 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER B 24 UNP O34452 EXPRESSION TAG SEQADV 2Q7F MET B 25 UNP O34452 EXPRESSION TAG SEQADV 2Q7F THR B 26 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY B 27 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY B 28 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLN B 29 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLN B 30 UNP O34452 EXPRESSION TAG SEQADV 2Q7F MET B 31 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY B 32 UNP O34452 EXPRESSION TAG SEQADV 2Q7F ARG B 33 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY B 34 UNP O34452 EXPRESSION TAG SEQADV 2Q7F SER B 35 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLU B 36 UNP O34452 EXPRESSION TAG SEQADV 2Q7F PHE B 37 UNP O34452 EXPRESSION TAG SEQADV 2Q7F LEU B 237 UNP O34452 EXPRESSION TAG SEQADV 2Q7F GLY B 238 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 239 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 240 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 241 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 242 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 243 UNP O34452 EXPRESSION TAG SEQADV 2Q7F HIS B 244 UNP O34452 EXPRESSION TAG SEQRES 1 A 243 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 243 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 243 GLY GLN GLN MET GLY ARG GLY SER GLU PHE GLY ASP TYR SEQRES 4 A 243 GLU LYS ALA ALA GLU ALA PHE THR LYS ALA ILE GLU GLU SEQRES 5 A 243 ASN LYS GLU ASP ALA ILE PRO TYR ILE ASN PHE ALA ASN SEQRES 6 A 243 LEU LEU SER SER VAL ASN GLU LEU GLU ARG ALA LEU ALA SEQRES 7 A 243 PHE TYR ASP LYS ALA LEU GLU LEU ASP SER SER ALA ALA SEQRES 8 A 243 THR ALA TYR TYR GLY ALA GLY ASN VAL TYR VAL VAL LYS SEQRES 9 A 243 GLU MET TYR LYS GLU ALA LYS ASP MET PHE GLU LYS ALA SEQRES 10 A 243 LEU ARG ALA GLY MET GLU ASN GLY ASP LEU PHE TYR MET SEQRES 11 A 243 LEU GLY THR VAL LEU VAL LYS LEU GLU GLN PRO LYS LEU SEQRES 12 A 243 ALA LEU PRO TYR LEU GLN ARG ALA VAL GLU LEU ASN GLU SEQRES 13 A 243 ASN ASP THR GLU ALA ARG PHE GLN PHE GLY MET CYS LEU SEQRES 14 A 243 ALA ASN GLU GLY MET LEU ASP GLU ALA LEU SER GLN PHE SEQRES 15 A 243 ALA ALA VAL THR GLU GLN ASP PRO GLY HIS ALA ASP ALA SEQRES 16 A 243 PHE TYR ASN ALA GLY VAL THR TYR ALA TYR LYS GLU ASN SEQRES 17 A 243 ARG GLU LYS ALA LEU GLU MET LEU ASP LYS ALA ILE ASP SEQRES 18 A 243 ILE GLN PRO ASP HIS MET LEU ALA LEU HIS ALA LYS LYS SEQRES 19 A 243 LEU LEU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 243 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 243 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 243 GLY GLN GLN MET GLY ARG GLY SER GLU PHE GLY ASP TYR SEQRES 4 B 243 GLU LYS ALA ALA GLU ALA PHE THR LYS ALA ILE GLU GLU SEQRES 5 B 243 ASN LYS GLU ASP ALA ILE PRO TYR ILE ASN PHE ALA ASN SEQRES 6 B 243 LEU LEU SER SER VAL ASN GLU LEU GLU ARG ALA LEU ALA SEQRES 7 B 243 PHE TYR ASP LYS ALA LEU GLU LEU ASP SER SER ALA ALA SEQRES 8 B 243 THR ALA TYR TYR GLY ALA GLY ASN VAL TYR VAL VAL LYS SEQRES 9 B 243 GLU MET TYR LYS GLU ALA LYS ASP MET PHE GLU LYS ALA SEQRES 10 B 243 LEU ARG ALA GLY MET GLU ASN GLY ASP LEU PHE TYR MET SEQRES 11 B 243 LEU GLY THR VAL LEU VAL LYS LEU GLU GLN PRO LYS LEU SEQRES 12 B 243 ALA LEU PRO TYR LEU GLN ARG ALA VAL GLU LEU ASN GLU SEQRES 13 B 243 ASN ASP THR GLU ALA ARG PHE GLN PHE GLY MET CYS LEU SEQRES 14 B 243 ALA ASN GLU GLY MET LEU ASP GLU ALA LEU SER GLN PHE SEQRES 15 B 243 ALA ALA VAL THR GLU GLN ASP PRO GLY HIS ALA ASP ALA SEQRES 16 B 243 PHE TYR ASN ALA GLY VAL THR TYR ALA TYR LYS GLU ASN SEQRES 17 B 243 ARG GLU LYS ALA LEU GLU MET LEU ASP LYS ALA ILE ASP SEQRES 18 B 243 ILE GLN PRO ASP HIS MET LEU ALA LEU HIS ALA LYS LYS SEQRES 19 B 243 LEU LEU GLY HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *56(H2 O) HELIX 1 1 PHE A 47 GLU A 52 1 6 HELIX 2 2 ASP A 57 VAL A 71 1 15 HELIX 3 3 GLU A 73 ASP A 88 1 16 HELIX 4 4 ALA A 91 LYS A 105 1 15 HELIX 5 5 MET A 107 GLY A 122 1 16 HELIX 6 6 ASN A 125 LEU A 139 1 15 HELIX 7 7 GLN A 141 ASN A 156 1 16 HELIX 8 8 ASP A 159 GLY A 174 1 16 HELIX 9 9 LEU A 176 ASP A 190 1 15 HELIX 10 10 HIS A 193 LYS A 207 1 15 HELIX 11 11 GLU A 211 GLN A 224 1 14 HELIX 12 12 HIS A 227 LYS A 235 1 9 HELIX 13 13 PHE B 47 ASN B 54 1 8 HELIX 14 14 ALA B 58 VAL B 71 1 14 HELIX 15 15 GLU B 73 ASP B 88 1 16 HELIX 16 16 ALA B 91 LYS B 105 1 15 HELIX 17 17 MET B 107 ALA B 121 1 15 HELIX 18 18 ASN B 125 LEU B 139 1 15 HELIX 19 19 GLN B 141 ASN B 156 1 16 HELIX 20 20 ASP B 159 GLY B 174 1 16 HELIX 21 21 MET B 175 ASP B 190 1 16 HELIX 22 22 HIS B 193 LYS B 207 1 15 HELIX 23 23 ASN B 209 LEU B 214 1 6 HELIX 24 24 MET B 216 GLN B 224 1 9 HELIX 25 25 HIS B 227 LYS B 235 1 9 CRYST1 100.938 85.139 69.048 90.00 130.63 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009907 0.000000 0.008500 0.00000 SCALE2 0.000000 0.011745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019083 0.00000