HEADER LYASE 22-JUN-07 2QDY TITLE CRYSTAL STRUCTURE OF FE-TYPE NHASE FROM RHODOCOCCUS ERYTHROPOLIS AJ270 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRILE HYDRATASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NITRILASE, NHASE; COMPND 5 EC: 4.2.1.84; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NITRILE HYDRATASE SUBUNIT BETA; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: NITRILASE, NHASE; COMPND 10 EC: 4.2.1.84 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS ERYTHROPOLIS; SOURCE 3 STRAIN: AJ270; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: RHODOCOCCUS ERYTHROPOLIS; SOURCE 6 STRAIN: AJ270 KEYWDS NITRILE HYDRATASE, POST TRANSLATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SONG,J.SHI,Z.XUE,M.-X.WANG,S.QIAN REVDAT 6 30-OCT-24 2QDY 1 REMARK REVDAT 5 25-OCT-23 2QDY 1 REMARK LINK REVDAT 4 18-OCT-17 2QDY 1 REMARK REVDAT 3 13-JUL-11 2QDY 1 VERSN REVDAT 2 24-FEB-09 2QDY 1 VERSN REVDAT 1 13-MAY-08 2QDY 0 JRNL AUTH L.SONG,M.WANG,J.SHI,Z.XUE,M.-X.WANG,S.QIAN JRNL TITL HIGH RESOLUTION X-RAY MOLECULAR STRUCTURE OF THE NITRILE JRNL TITL 2 HYDRATASE FROM RHODOCOCCUS ERYTHROPOLIS AJ270 REVEALS JRNL TITL 3 POSTTRANSLATIONAL OXIDATION OF TWO CYSTEINES INTO SULFINIC JRNL TITL 4 ACIDS AND A NOVEL BIOCATALYTIC NITRILE HYDRATION MECHANISM JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 362 319 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17716629 JRNL DOI 10.1016/J.BBRC.2007.07.184 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 110564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5531 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 379 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.249 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3471 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4737 ; 1.710 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 435 ; 5.702 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;35.647 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;10.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;20.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2698 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1833 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2384 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 460 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.108 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.026 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 1.671 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3411 ; 2.220 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1511 ; 2.839 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1312 ; 3.730 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3663 ; 1.644 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 596 ; 8.935 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3376 ; 6.515 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110580 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 35.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2AHJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 8000, 0.3M MAGNESIUM CHLORIDE, REMARK 280 0.1M TRISHCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.03200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.03400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.03200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.03400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -218.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2091 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 ASP A 6 REMARK 465 HIS A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 VAL A 207 REMARK 465 ALA B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE A 300 O HOH A 2172 2.12 REMARK 500 NH1 ARG A 142 O ILE A 152 2.17 REMARK 500 O HOH B 2216 O HOH B 2233 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 61 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CSD A 113 -91.14 -174.00 REMARK 500 SER A 114 6.14 -168.10 REMARK 500 ALA A 165 -132.51 -140.32 REMARK 500 ARG B 141 43.00 -102.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 110 SG REMARK 620 2 CSD A 113 SG 92.4 REMARK 620 3 SER A 114 N 93.2 98.3 REMARK 620 4 CSD A 115 SG 92.7 93.8 166.4 REMARK 620 5 CSD A 115 N 94.0 173.6 82.1 85.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IBN B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AHJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN DBREF 2QDY A 1 207 UNP P13448 NHAA_RHOER 1 207 DBREF 2QDY B 1 212 UNP P13449 NHAB_RHOER 1 212 SEQRES 1 A 207 MET SER VAL THR ILE ASP HIS THR THR GLU ASN ALA ALA SEQRES 2 A 207 PRO ALA GLN ALA PRO VAL SER ASP ARG ALA TRP ALA LEU SEQRES 3 A 207 PHE ARG ALA LEU ASP GLY LYS GLY LEU VAL PRO ASP GLY SEQRES 4 A 207 TYR VAL GLU GLY TRP LYS LYS THR PHE GLU GLU ASP PHE SEQRES 5 A 207 SER PRO ARG ARG GLY ALA GLU LEU VAL ALA ARG ALA TRP SEQRES 6 A 207 THR ASP PRO GLU PHE ARG GLN LEU LEU LEU THR ASP GLY SEQRES 7 A 207 THR ALA ALA VAL ALA GLN TYR GLY TYR LEU GLY PRO GLN SEQRES 8 A 207 GLY GLU TYR ILE VAL ALA VAL GLU ASP THR PRO THR LEU SEQRES 9 A 207 LYS ASN VAL ILE VAL CYS SER LEU CSD SER CSD THR ALA SEQRES 10 A 207 TRP PRO ILE LEU GLY LEU PRO PRO THR TRP TYR LYS SER SEQRES 11 A 207 PHE GLU TYR ARG ALA ARG VAL VAL ARG GLU PRO ARG LYS SEQRES 12 A 207 VAL LEU SER GLU MET GLY THR GLU ILE ALA SER ASP ILE SEQRES 13 A 207 GLU ILE ARG VAL TYR ASP THR THR ALA GLU THR ARG TYR SEQRES 14 A 207 MET VAL LEU PRO GLN ARG PRO ALA GLY THR GLU GLY TRP SEQRES 15 A 207 SER GLN GLU GLN LEU GLN GLU ILE VAL THR LYS ASP CYS SEQRES 16 A 207 LEU ILE GLY VAL ALA ILE PRO GLN VAL PRO THR VAL SEQRES 1 B 212 MET ASP GLY VAL HIS ASP LEU ALA GLY VAL GLN GLY PHE SEQRES 2 B 212 GLY LYS VAL PRO HIS THR VAL ASN ALA ASP ILE GLY PRO SEQRES 3 B 212 THR PHE HIS ALA GLU TRP GLU HIS LEU PRO TYR SER LEU SEQRES 4 B 212 MET PHE ALA GLY VAL ALA GLU LEU GLY ALA PHE SER VAL SEQRES 5 B 212 ASP GLU VAL ARG TYR VAL VAL GLU ARG MET GLU PRO ARG SEQRES 6 B 212 HIS TYR MET MET THR PRO TYR TYR GLU ARG TYR VAL ILE SEQRES 7 B 212 GLY VAL ALA THR LEU MET VAL GLU LYS GLY ILE LEU THR SEQRES 8 B 212 GLN ASP GLU LEU GLU SER LEU ALA GLY GLY PRO PHE PRO SEQRES 9 B 212 LEU SER ARG PRO SER GLU SER GLU GLY ARG PRO ALA PRO SEQRES 10 B 212 VAL GLU THR THR THR PHE GLU VAL GLY GLN ARG VAL ARG SEQRES 11 B 212 VAL ARG ASP GLU TYR VAL PRO GLY HIS ILE ARG MET PRO SEQRES 12 B 212 ALA TYR CYS ARG GLY ARG VAL GLY THR ILE SER HIS ARG SEQRES 13 B 212 THR THR GLU LYS TRP PRO PHE PRO ASP ALA ILE GLY HIS SEQRES 14 B 212 GLY ARG ASN ASP ALA GLY GLU GLU PRO THR TYR HIS VAL SEQRES 15 B 212 LYS PHE ALA ALA GLU GLU LEU PHE GLY SER ASP THR ASP SEQRES 16 B 212 GLY GLY SER VAL VAL VAL ASP LEU PHE GLU GLY TYR LEU SEQRES 17 B 212 GLU PRO ALA ALA MODRES 2QDY CSD A 113 CYS 3-SULFINOALANINE MODRES 2QDY CSD A 115 CYS 3-SULFINOALANINE HET CSD A 113 8 HET CSD A 115 8 HET FE A 300 1 HET CL A2002 1 HET CL A2004 1 HET MG A2007 1 HET GOL A1100 6 HET GOL A1200 6 HET CL B2001 1 HET CL B2003 1 HET MG B2005 1 HET MG B2006 1 HET IBN B1000 5 HET GOL B1300 6 HET GOL B1400 6 HET GOL B1500 6 HET GOL B1600 6 HETNAM CSD 3-SULFINOALANINE HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM IBN 2-METHYLPROPAN-1-AMINE HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IBN ISOBUTYRONITRILE FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 FE FE 3+ FORMUL 4 CL 4(CL 1-) FORMUL 6 MG 3(MG 2+) FORMUL 7 GOL 6(C3 H8 O3) FORMUL 13 IBN C4 H11 N FORMUL 18 HOH *585(H2 O) HELIX 1 1 PRO A 18 GLY A 32 1 15 HELIX 2 2 GLY A 39 ASP A 51 1 13 HELIX 3 3 SER A 53 ASP A 67 1 15 HELIX 4 4 ASP A 67 ASP A 77 1 11 HELIX 5 5 ASP A 77 TYR A 85 1 9 HELIX 6 6 ALA A 117 GLY A 122 1 6 HELIX 7 7 PRO A 125 LYS A 129 5 5 HELIX 8 8 SER A 130 VAL A 137 1 8 HELIX 9 9 GLU A 140 GLY A 149 1 10 HELIX 10 10 SER A 183 VAL A 191 1 9 HELIX 11 11 THR A 192 GLY A 198 1 7 HELIX 12 12 HIS B 34 GLU B 46 1 13 HELIX 13 13 SER B 51 ARG B 61 1 11 HELIX 14 14 GLU B 63 THR B 70 1 8 HELIX 15 15 PRO B 71 LYS B 87 1 17 HELIX 16 16 THR B 91 GLY B 100 1 10 HELIX 17 17 PRO B 143 ARG B 147 5 5 HELIX 18 18 PHE B 163 GLY B 168 1 6 HELIX 19 19 ALA B 186 GLY B 191 1 6 SHEET 1 A 2 ILE A 95 GLU A 99 0 SHEET 2 A 2 ARG A 168 LEU A 172 1 O LEU A 172 N VAL A 98 SHEET 1 B 7 LEU A 104 VAL A 109 0 SHEET 2 B 7 GLU A 157 ASP A 162 1 O GLU A 157 N LYS A 105 SHEET 3 B 7 SER B 198 PHE B 204 1 O VAL B 200 N VAL A 160 SHEET 4 B 7 THR B 179 ALA B 185 -1 N PHE B 184 O VAL B 199 SHEET 5 B 7 VAL B 150 ARG B 156 -1 N SER B 154 O HIS B 181 SHEET 6 B 7 ARG B 128 VAL B 131 -1 N VAL B 129 O GLY B 151 SHEET 7 B 7 LEU B 208 PRO B 210 -1 O GLU B 209 N ARG B 130 LINK C LEU A 112 N CSD A 113 1555 1555 1.34 LINK C CSD A 113 N SER A 114 1555 1555 1.36 LINK C SER A 114 N CSD A 115 1555 1555 1.32 LINK C CSD A 115 N THR A 116 1555 1555 1.35 LINK SG CYS A 110 FE FE A 300 1555 1555 2.22 LINK SG CSD A 113 FE FE A 300 1555 1555 2.17 LINK N SER A 114 FE FE A 300 1555 1555 2.03 LINK SG CSD A 115 FE FE A 300 1555 1555 2.18 LINK N CSD A 115 FE FE A 300 1555 1555 1.98 SITE 1 AC1 3 CYS A 110 SER A 114 HOH A2172 SITE 1 AC2 4 THR B 121 ARG B 132 LEU B 208 HOH B2337 SITE 1 AC3 4 SER A 20 TRP A 24 GLU B 31 TRP B 32 SITE 1 AC4 4 GLU B 134 TYR B 135 SER B 192 HOH B2182 SITE 1 AC5 4 GLN A 174 ARG A 175 HOH A2191 HOH A2207 SITE 1 AC6 6 HOH B2020 HOH B2059 HOH B2064 HOH B2073 SITE 2 AC6 6 HOH B2091 HOH B2224 SITE 1 AC7 5 HOH A2077 HOH A2162 HOH B2214 HOH B2227 SITE 2 AC7 5 HOH B2252 SITE 1 AC8 5 HOH A2238 HOH B2081 HOH B2314 HOH B2321 SITE 2 AC8 5 HOH B2328 SITE 1 AC9 6 GLN A 91 HOH A2175 TYR B 37 MET B 40 SITE 2 AC9 6 TYR B 72 TYR B 76 SITE 1 BC1 5 TYR A 40 GLY A 43 TRP A 44 THR A 47 SITE 2 BC1 5 HOH A2199 SITE 1 BC2 7 ASP A 77 GLY A 78 THR A 79 TYR A 94 SITE 2 BC2 7 ILE A 95 HOH A2088 THR B 158 SITE 1 BC3 11 ARG A 139 GLU A 140 GLN B 11 PRO B 137 SITE 2 BC3 11 ASP B 193 THR B 194 ASP B 195 HOH B2095 SITE 3 BC3 11 HOH B2129 HOH B2170 HOH B2189 SITE 1 BC4 6 ARG B 147 GLY B 148 ARG B 149 HOH B2089 SITE 2 BC4 6 HOH B2133 HOH B2288 SITE 1 BC5 6 TYR A 161 SER B 154 HIS B 155 HIS B 181 SITE 2 BC5 6 HOH B2106 HOH B2199 SITE 1 BC6 12 TRP A 65 THR A 66 ASP A 67 PRO A 68 SITE 2 BC6 12 ARG A 175 HOH A2061 GLN B 92 ASP B 93 SITE 3 BC6 12 HOH B2102 HOH B2214 HOH B2227 HOH B2333 CRYST1 114.064 60.068 81.761 90.00 125.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008767 0.000000 0.006174 0.00000 SCALE2 0.000000 0.016648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014959 0.00000