data_2QEF
# 
_entry.id   2QEF 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.377 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2QEF         pdb_00002qef 10.2210/pdb2qef/pdb 
NDB   BD0102       ?            ?                   
RCSB  RCSB043494   ?            ?                   
WWPDB D_1000043494 ?            ?                   
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          2QEG 
_pdbx_database_related.details        . 
_pdbx_database_related.content_type   unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        2QEF 
_pdbx_database_status.recvd_initial_deposition_date   2007-06-25 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Wang, F.'    1 
'Li, F.'      2 
'Ganguly, M.' 3 
'Marky, L.A.' 4 
'Gold, B.'    5 
'Egli, M.'    6 
'Stone, M.P.' 7 
# 
_citation.id                        primary 
_citation.title                     
;A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.
;
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            47 
_citation.page_first                7147 
_citation.page_last                 7157 
_citation.year                      2008 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   18549246 
_citation.pdbx_database_id_DOI      10.1021/bi800375m 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Wang, F.'    1 ? 
primary 'Li, F.'      2 ? 
primary 'Ganguly, M.' 3 ? 
primary 'Marky, L.A.' 4 ? 
primary 'Gold, B.'    5 ? 
primary 'Egli, M.'    6 ? 
primary 'Stone, M.P.' 7 ? 
# 
_cell.entry_id           2QEF 
_cell.length_a           24.858 
_cell.length_b           41.057 
_cell.length_c           66.615 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         2QEF 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(ZDU)P*DCP*(7GU)P*DCP*DG)-3')
;
3705.472 2  ? ? ? DDD2+/Z10 
2 water   nat water                                                                  18.015   96 ? ? ? ?         
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(ZDU)(DC)(7GU)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATUCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC  n 
1 2  DG  n 
1 3  DC  n 
1 4  DG  n 
1 5  DA  n 
1 6  DA  n 
1 7  DT  n 
1 8  ZDU n 
1 9  DC  n 
1 10 7GU n 
1 11 DC  n 
1 12 DG  n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                
;The oligodeoxynucleotide 5'-d(CGCGAATXCZCG)-3' (DDD2+/Z10) was synthesized and purified using reversed-phase semipreparative HPLC (Phenomenex, Phenyl-Hexyl, 5 m, 250 10.0 mm) equilibrated with 0.1 M ammonium formate (pH 7.0) and desalted using G25 column.
;
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    2QEF 
_struct_ref.pdbx_db_accession          2QEF 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   CGCGAATUCGCG 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 2QEF A 1 ? 12 ? 2QEF 1 ? 12 ? 1 12 
2 1 2QEF B 1 ? 12 ? 2QEF 1 ? 12 ? 1 12 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
7GU 'DNA linking' n "7-DEAZA-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"         ? 'C11 H15 N4 O7 P' 346.233 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                 ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                 ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                                ? 'H2 O'            18.015  
ZDU 'DNA linking' n "5-(3-AMINOPROPYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C12 H20 N3 O8 P' 365.276 
# 
_exptl.entry_id          2QEF 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.21 
_exptl_crystal.density_percent_sol   44.28 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            291 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.0 
_exptl_crystal_grow.pdbx_details    
;Final droplets contain 0.6 mM oligonucleotides, 5% MPD, 20 mM sodium cacodylate, 6 mM spermine tetrahydrochloride, 40 mM KCl and 10 mM MgCl2., pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
;
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1  1 MPD                           ? ? ? 
1 2  1 'sodium cacodylate'           ? ? ? 
1 3  1 'spermine tetrahydrochloride' ? ? ? 
1 4  1 KCl                           ? ? ? 
1 5  1 MgCl2                         ? ? ? 
1 6  2 MPD                           ? ? ? 
1 7  2 'sodium cacodylate'           ? ? ? 
1 8  2 'spermine tetrahydrochloride' ? ? ? 
1 9  2 KCl                           ? ? ? 
1 10 2 MgCl2                         ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   'MAR CCD 165 mm' 
_diffrn_detector.pdbx_collection_date   2007-04-18 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'APS BEAMLINE 22-ID' 
_diffrn_source.pdbx_synchrotron_site       APS 
_diffrn_source.pdbx_synchrotron_beamline   22-ID 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1 
# 
_reflns.entry_id                     2QEF 
_reflns.observed_criterion_sigma_F   0 
_reflns.observed_criterion_sigma_I   0 
_reflns.d_resolution_high            1.6 
_reflns.d_resolution_low             34.94 
_reflns.number_all                   9574 
_reflns.number_obs                   8368 
_reflns.percent_possible_obs         93 
_reflns.pdbx_Rmerge_I_obs            0.067 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              8.5 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             1.60 
_reflns_shell.d_res_low              1.68 
_reflns_shell.percent_possible_all   62.1 
_reflns_shell.Rmerge_I_obs           0.133 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        4.1 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      821 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 2QEF 
_refine.ls_number_reflns_obs                     8368 
_refine.ls_number_reflns_all                     9574 
_refine.pdbx_ls_sigma_I                          2.0 
_refine.pdbx_ls_sigma_F                          2.0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             34.94 
_refine.ls_d_res_high                            1.60 
_refine.ls_percent_reflns_obs                    93.38 
_refine.ls_R_factor_obs                          0.18112 
_refine.ls_R_factor_all                          0.18365 
_refine.ls_R_factor_R_work                       0.18112 
_refine.ls_R_factor_R_free                       0.23114 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 5.6 
_refine.ls_number_reflns_R_free                  497 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.965 
_refine.correlation_coeff_Fo_to_Fc_free          0.953 
_refine.B_iso_mean                               29.313 
_refine.aniso_B[1][1]                            1.23 
_refine.aniso_B[2][2]                            -0.44 
_refine.aniso_B[3][3]                            -0.79 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    'BABINET MODEL WITH MASK' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.20 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' 
_refine.pdbx_starting_model                      355D 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R_Free                  0.103 
_refine.overall_SU_ML                            0.067 
_refine.overall_SU_B                             4.317 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_overall_ESU_R                       0.134 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   492 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             96 
_refine_hist.number_atoms_total               588 
_refine_hist.d_res_high                       1.60 
_refine_hist.d_res_low                        34.94 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d         0.006 0.021 ? 546 'X-RAY DIFFRACTION' ? 
r_bond_other_d           0.002 0.020 ? 238 'X-RAY DIFFRACTION' ? 
r_angle_refined_deg      1.596 3.000 ? 822 'X-RAY DIFFRACTION' ? 
r_angle_other_deg        1.096 3.000 ? 596 'X-RAY DIFFRACTION' ? 
r_chiral_restr           0.064 0.200 ? 94  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined     0.024 0.020 ? 248 'X-RAY DIFFRACTION' ? 
r_nbd_refined            0.526 0.200 ? 76  'X-RAY DIFFRACTION' ? 
r_nbd_other              0.251 0.200 ? 261 'X-RAY DIFFRACTION' ? 
r_nbtor_refined          0.249 0.200 ? 189 'X-RAY DIFFRACTION' ? 
r_nbtor_other            0.081 0.200 ? 128 'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined    0.174 0.200 ? 60  'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined   0.008 0.200 ? 1   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_other     0.136 0.200 ? 17  'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined 0.180 0.200 ? 5   'X-RAY DIFFRACTION' ? 
r_scbond_it              3.735 3.000 ? 786 'X-RAY DIFFRACTION' ? 
r_scangle_it             4.893 4.500 ? 822 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       1.600 
_refine_ls_shell.d_res_low                        1.641 
_refine_ls_shell.number_reflns_R_work             336 
_refine_ls_shell.R_factor_R_work                  0.162 
_refine_ls_shell.percent_reflns_obs               52.94 
_refine_ls_shell.R_factor_R_free                  0.23 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             24 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
_struct.entry_id                  2QEF 
_struct.title                     'X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCG' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2QEF 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, Z3dU, 7-deaza-dG, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A DT  7  "O3'" ? ? ? 1_555 A ZDU 8  P  ? ? A DT  7  A ZDU 8  1_555 ? ? ? ? ? ? ?            1.591 ? ? 
covale2  covale both ? A ZDU 8  "O3'" ? ? ? 1_555 A DC  9  P  ? ? A ZDU 8  A DC  9  1_555 ? ? ? ? ? ? ?            1.634 ? ? 
covale3  covale both ? A DC  9  "O3'" ? ? ? 1_555 A 7GU 10 P  ? ? A DC  9  A 7GU 10 1_555 ? ? ? ? ? ? ?            1.594 ? ? 
covale4  covale both ? A 7GU 10 "O3'" ? ? ? 1_555 A DC  11 P  ? ? A 7GU 10 A DC  11 1_555 ? ? ? ? ? ? ?            1.632 ? ? 
covale5  covale both ? B DT  7  "O3'" ? ? ? 1_555 B ZDU 8  P  ? ? B DT  7  B ZDU 8  1_555 ? ? ? ? ? ? ?            1.600 ? ? 
covale6  covale both ? B ZDU 8  "O3'" ? ? ? 1_555 B DC  9  P  ? ? B ZDU 8  B DC  9  1_555 ? ? ? ? ? ? ?            1.537 ? ? 
covale7  covale both ? B DC  9  "O3'" ? ? ? 1_555 B 7GU 10 P  ? ? B DC  9  B 7GU 10 1_555 ? ? ? ? ? ? ?            1.595 ? ? 
covale8  covale both ? B 7GU 10 "O3'" ? ? ? 1_555 B DC  11 P  ? ? B 7GU 10 B DC  11 1_555 ? ? ? ? ? ? ?            1.649 ? ? 
hydrog1  hydrog ?    ? A DC  1  N3    ? ? ? 1_555 B DG  12 N1 ? ? A DC  1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DC  1  N4    ? ? ? 1_555 B DG  12 O6 ? ? A DC  1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DC  1  O2    ? ? ? 1_555 B DG  12 N2 ? ? A DC  1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DG  2  N1    ? ? ? 1_555 B DC  11 N3 ? ? A DG  2  B DC  11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DG  2  N2    ? ? ? 1_555 B DC  11 O2 ? ? A DG  2  B DC  11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DG  2  O6    ? ? ? 1_555 B DC  11 N4 ? ? A DG  2  B DC  11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DC  3  N3    ? ? ? 1_555 B 7GU 10 N1 ? ? A DC  3  B 7GU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DC  3  N4    ? ? ? 1_555 B 7GU 10 O6 ? ? A DC  3  B 7GU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DC  3  O2    ? ? ? 1_555 B 7GU 10 N2 ? ? A DC  3  B 7GU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DG  4  N1    ? ? ? 1_555 B DC  9  N3 ? ? A DG  4  B DC  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DG  4  N2    ? ? ? 1_555 B DC  9  O2 ? ? A DG  4  B DC  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DG  4  O6    ? ? ? 1_555 B DC  9  N4 ? ? A DG  4  B DC  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DA  5  N1    ? ? ? 1_555 B ZDU 8  N3 ? ? A DA  5  B ZDU 8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A DA  5  N6    ? ? ? 1_555 B ZDU 8  O4 ? ? A DA  5  B ZDU 8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A DA  6  N1    ? ? ? 1_555 B DT  7  N3 ? ? A DA  6  B DT  7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DA  6  N6    ? ? ? 1_555 B DT  7  O4 ? ? A DA  6  B DT  7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DT  7  N3    ? ? ? 1_555 B DA  6  N1 ? ? A DT  7  B DA  6  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DT  7  O4    ? ? ? 1_555 B DA  6  N6 ? ? A DT  7  B DA  6  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A ZDU 8  N3    ? ? ? 1_555 B DA  5  N1 ? ? A ZDU 8  B DA  5  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A ZDU 8  O4    ? ? ? 1_555 B DA  5  N6 ? ? A ZDU 8  B DA  5  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DC  9  N3    ? ? ? 1_555 B DG  4  N1 ? ? A DC  9  B DG  4  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DC  9  N4    ? ? ? 1_555 B DG  4  O6 ? ? A DC  9  B DG  4  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DC  9  O2    ? ? ? 1_555 B DG  4  N2 ? ? A DC  9  B DG  4  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A 7GU 10 N1    ? ? ? 1_555 B DC  3  N3 ? ? A 7GU 10 B DC  3  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? A 7GU 10 N2    ? ? ? 1_555 B DC  3  O2 ? ? A 7GU 10 B DC  3  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? A 7GU 10 O6    ? ? ? 1_555 B DC  3  N4 ? ? A 7GU 10 B DC  3  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ?    ? A DC  11 N3    ? ? ? 1_555 B DG  2  N1 ? ? A DC  11 B DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ?    ? A DC  11 N4    ? ? ? 1_555 B DG  2  O6 ? ? A DC  11 B DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ?    ? A DC  11 O2    ? ? ? 1_555 B DG  2  N2 ? ? A DC  11 B DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ?    ? A DG  12 N1    ? ? ? 1_555 B DC  1  N3 ? ? A DG  12 B DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ?    ? A DG  12 N2    ? ? ? 1_555 B DC  1  O2 ? ? A DG  12 B DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ?    ? A DG  12 O6    ? ? ? 1_555 B DC  1  N4 ? ? A DG  12 B DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
_database_PDB_matrix.entry_id          2QEF 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    2QEF 
_atom_sites.fract_transf_matrix[1][1]   0.040228 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.024356 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015012 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC  1  1  1  DC  C   A . n 
A 1 2  DG  2  2  2  DG  G   A . n 
A 1 3  DC  3  3  3  DC  C   A . n 
A 1 4  DG  4  4  4  DG  G   A . n 
A 1 5  DA  5  5  5  DA  A   A . n 
A 1 6  DA  6  6  6  DA  A   A . n 
A 1 7  DT  7  7  7  DT  T   A . n 
A 1 8  ZDU 8  8  8  ZDU TZ  A . n 
A 1 9  DC  9  9  9  DC  C   A . n 
A 1 10 7GU 10 10 10 7GU 7DG A . n 
A 1 11 DC  11 11 11 DC  C   A . n 
A 1 12 DG  12 12 12 DG  G   A . n 
B 1 1  DC  1  1  13 DC  C   B . n 
B 1 2  DG  2  2  14 DG  G   B . n 
B 1 3  DC  3  3  15 DC  C   B . n 
B 1 4  DG  4  4  16 DG  G   B . n 
B 1 5  DA  5  5  17 DA  A   B . n 
B 1 6  DA  6  6  18 DA  A   B . n 
B 1 7  DT  7  7  19 DT  T   B . n 
B 1 8  ZDU 8  8  20 ZDU TZ  B . n 
B 1 9  DC  9  9  21 DC  C   B . n 
B 1 10 7GU 10 10 22 7GU 7DG B . n 
B 1 11 DC  11 11 23 DC  C   B . n 
B 1 12 DG  12 12 24 DG  G   B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 HOH 1  13 101 HOH HOH A . 
C 2 HOH 2  14 103 HOH HOH A . 
C 2 HOH 3  15 104 HOH HOH A . 
C 2 HOH 4  16 107 HOH HOH A . 
C 2 HOH 5  17 108 HOH HOH A . 
C 2 HOH 6  18 109 HOH HOH A . 
C 2 HOH 7  19 110 HOH HOH A . 
C 2 HOH 8  20 112 HOH HOH A . 
C 2 HOH 9  21 115 HOH HOH A . 
C 2 HOH 10 22 118 HOH HOH A . 
C 2 HOH 11 23 119 HOH HOH A . 
C 2 HOH 12 24 121 HOH HOH A . 
C 2 HOH 13 25 122 HOH HOH A . 
C 2 HOH 14 26 123 HOH HOH A . 
C 2 HOH 15 27 124 HOH HOH A . 
C 2 HOH 16 28 127 HOH HOH A . 
C 2 HOH 17 29 130 HOH HOH A . 
C 2 HOH 18 30 131 HOH HOH A . 
C 2 HOH 19 31 136 HOH HOH A . 
C 2 HOH 20 32 147 HOH HOH A . 
C 2 HOH 21 33 148 HOH HOH A . 
C 2 HOH 22 34 150 HOH HOH A . 
C 2 HOH 23 35 151 HOH HOH A . 
C 2 HOH 24 36 152 HOH HOH A . 
C 2 HOH 25 37 153 HOH HOH A . 
C 2 HOH 26 38 154 HOH HOH A . 
C 2 HOH 27 39 155 HOH HOH A . 
C 2 HOH 28 40 157 HOH HOH A . 
C 2 HOH 29 41 159 HOH HOH A . 
C 2 HOH 30 42 167 HOH HOH A . 
C 2 HOH 31 43 168 HOH HOH A . 
C 2 HOH 32 44 169 HOH HOH A . 
C 2 HOH 33 45 173 HOH HOH A . 
C 2 HOH 34 46 176 HOH HOH A . 
C 2 HOH 35 47 177 HOH HOH A . 
C 2 HOH 36 48 180 HOH HOH A . 
C 2 HOH 37 49 181 HOH HOH A . 
C 2 HOH 38 50 182 HOH HOH A . 
C 2 HOH 39 51 183 HOH HOH A . 
C 2 HOH 40 52 184 HOH HOH A . 
C 2 HOH 41 53 185 HOH HOH A . 
C 2 HOH 42 54 186 HOH HOH A . 
C 2 HOH 43 55 187 HOH HOH A . 
C 2 HOH 44 56 188 HOH HOH A . 
C 2 HOH 45 57 189 HOH HOH A . 
C 2 HOH 46 58 190 HOH HOH A . 
C 2 HOH 47 59 193 HOH HOH A . 
C 2 HOH 48 60 194 HOH HOH A . 
C 2 HOH 49 61 195 HOH HOH A . 
C 2 HOH 50 62 197 HOH HOH A . 
C 2 HOH 51 63 206 HOH HOH A . 
C 2 HOH 52 64 212 HOH HOH A . 
C 2 HOH 53 65 214 HOH HOH A . 
C 2 HOH 54 66 216 HOH HOH A . 
C 2 HOH 55 67 217 HOH HOH A . 
D 2 HOH 1  13 105 HOH HOH B . 
D 2 HOH 2  14 106 HOH HOH B . 
D 2 HOH 3  15 111 HOH HOH B . 
D 2 HOH 4  16 113 HOH HOH B . 
D 2 HOH 5  17 114 HOH HOH B . 
D 2 HOH 6  18 116 HOH HOH B . 
D 2 HOH 7  19 117 HOH HOH B . 
D 2 HOH 8  20 120 HOH HOH B . 
D 2 HOH 9  21 125 HOH HOH B . 
D 2 HOH 10 22 126 HOH HOH B . 
D 2 HOH 11 23 128 HOH HOH B . 
D 2 HOH 12 24 129 HOH HOH B . 
D 2 HOH 13 25 133 HOH HOH B . 
D 2 HOH 14 26 137 HOH HOH B . 
D 2 HOH 15 27 138 HOH HOH B . 
D 2 HOH 16 28 141 HOH HOH B . 
D 2 HOH 17 29 142 HOH HOH B . 
D 2 HOH 18 30 149 HOH HOH B . 
D 2 HOH 19 31 166 HOH HOH B . 
D 2 HOH 20 32 174 HOH HOH B . 
D 2 HOH 21 33 175 HOH HOH B . 
D 2 HOH 22 34 178 HOH HOH B . 
D 2 HOH 23 35 179 HOH HOH B . 
D 2 HOH 24 36 191 HOH HOH B . 
D 2 HOH 25 37 196 HOH HOH B . 
D 2 HOH 26 38 198 HOH HOH B . 
D 2 HOH 27 39 199 HOH HOH B . 
D 2 HOH 28 40 200 HOH HOH B . 
D 2 HOH 29 41 201 HOH HOH B . 
D 2 HOH 30 42 202 HOH HOH B . 
D 2 HOH 31 43 203 HOH HOH B . 
D 2 HOH 32 44 204 HOH HOH B . 
D 2 HOH 33 45 205 HOH HOH B . 
D 2 HOH 34 46 207 HOH HOH B . 
D 2 HOH 35 47 208 HOH HOH B . 
D 2 HOH 36 48 209 HOH HOH B . 
D 2 HOH 37 49 210 HOH HOH B . 
D 2 HOH 38 50 211 HOH HOH B . 
D 2 HOH 39 51 213 HOH HOH B . 
D 2 HOH 40 52 215 HOH HOH B . 
D 2 HOH 41 53 218 HOH HOH B . 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A ZDU 8  A ZDU 8  ? DU ? 
2 A 7GU 10 A 7GU 10 ? DG ? 
3 B ZDU 8  B ZDU 8  ? DU ? 
4 B 7GU 10 B 7GU 10 ? DG ? 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 3600 ? 
1 MORE         21.5 ? 
1 'SSA (A^2)'  4130 ? 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2008-05-06 
2 'Structure model' 1 1 2011-07-13 
3 'Structure model' 1 2 2023-08-30 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Data collection'           
3 3 'Structure model' 'Database references'       
4 3 'Structure model' 'Derived calculations'      
5 3 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom                
2 3 'Structure model' chem_comp_bond                
3 3 'Structure model' database_2                    
4 3 'Structure model' pdbx_initial_refinement_model 
5 3 'Structure model' struct_conn                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 3 'Structure model' '_database_2.pdbx_DOI'                
2 3 'Structure model' '_database_2.pdbx_database_accession' 
3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
# 
_pdbx_refine_tls.id               1 
_pdbx_refine_tls.details          ? 
_pdbx_refine_tls.method           refined 
_pdbx_refine_tls.origin_x         14.8814 
_pdbx_refine_tls.origin_y         20.6298 
_pdbx_refine_tls.origin_z         9.3648 
_pdbx_refine_tls.T[1][1]          0.0089 
_pdbx_refine_tls.T[2][2]          0.0206 
_pdbx_refine_tls.T[3][3]          0.0072 
_pdbx_refine_tls.T[1][2]          0.0145 
_pdbx_refine_tls.T[1][3]          0.0131 
_pdbx_refine_tls.T[2][3]          0.0115 
_pdbx_refine_tls.L[1][1]          0.0843 
_pdbx_refine_tls.L[2][2]          0.0169 
_pdbx_refine_tls.L[3][3]          1.7745 
_pdbx_refine_tls.L[1][2]          0.0026 
_pdbx_refine_tls.L[1][3]          -0.0160 
_pdbx_refine_tls.L[2][3]          0.1719 
_pdbx_refine_tls.S[1][1]          0.0514 
_pdbx_refine_tls.S[1][2]          -0.0148 
_pdbx_refine_tls.S[1][3]          0.0090 
_pdbx_refine_tls.S[2][1]          -0.0060 
_pdbx_refine_tls.S[2][2]          0.0436 
_pdbx_refine_tls.S[2][3]          -0.0145 
_pdbx_refine_tls.S[3][1]          0.0261 
_pdbx_refine_tls.S[3][2]          -0.0591 
_pdbx_refine_tls.S[3][3]          -0.0950 
_pdbx_refine_tls.pdbx_refine_id   'X-RAY DIFFRACTION' 
# 
loop_
_pdbx_refine_tls_group.id 
_pdbx_refine_tls_group.refine_tls_id 
_pdbx_refine_tls_group.beg_auth_asym_id 
_pdbx_refine_tls_group.beg_auth_seq_id 
_pdbx_refine_tls_group.beg_label_asym_id 
_pdbx_refine_tls_group.beg_label_seq_id 
_pdbx_refine_tls_group.end_auth_asym_id 
_pdbx_refine_tls_group.end_auth_seq_id 
_pdbx_refine_tls_group.end_label_asym_id 
_pdbx_refine_tls_group.end_label_seq_id 
_pdbx_refine_tls_group.selection 
_pdbx_refine_tls_group.pdbx_refine_id 
_pdbx_refine_tls_group.selection_details 
1 1 A 1 A 1 A 12 A 12 ? 'X-RAY DIFFRACTION' ? 
2 1 B 1 B 1 B 12 B 12 ? 'X-RAY DIFFRACTION' ? 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
REFMAC   refinement        5.2.0005 ? 1 
HKL-2000 'data collection' .        ? 2 
HKL-2000 'data reduction'  .        ? 3 
HKL-2000 'data scaling'    .        ? 4 
EPMR     phasing           .        ? 5 
# 
_pdbx_validate_close_contact.id               1 
_pdbx_validate_close_contact.PDB_model_num    1 
_pdbx_validate_close_contact.auth_atom_id_1   O 
_pdbx_validate_close_contact.auth_asym_id_1   A 
_pdbx_validate_close_contact.auth_comp_id_1   HOH 
_pdbx_validate_close_contact.auth_seq_id_1    43 
_pdbx_validate_close_contact.PDB_ins_code_1   ? 
_pdbx_validate_close_contact.label_alt_id_1   ? 
_pdbx_validate_close_contact.auth_atom_id_2   O 
_pdbx_validate_close_contact.auth_asym_id_2   A 
_pdbx_validate_close_contact.auth_comp_id_2   HOH 
_pdbx_validate_close_contact.auth_seq_id_2    48 
_pdbx_validate_close_contact.PDB_ins_code_2   ? 
_pdbx_validate_close_contact.label_alt_id_2   ? 
_pdbx_validate_close_contact.dist             2.03 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "O4'" A DC  1  ? ? "C1'" A DC  1  ? ? N1  A DC 1  ? ? 111.91 108.30 3.61  0.30 N 
2 1 "O3'" A ZDU 8  ? ? P     A DC  9  ? ? OP2 A DC 9  ? ? 118.04 110.50 7.54  1.10 Y 
3 1 "O4'" B DG  4  ? ? "C1'" B DG  4  ? ? N9  B DG 4  ? ? 110.84 108.30 2.54  0.30 N 
4 1 "C3'" B 7GU 10 ? ? "O3'" B 7GU 10 ? ? P   B DC 11 ? ? 132.14 119.70 12.44 1.20 Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
7GU P      P N N 1   
7GU OP1    O N N 2   
7GU OP2    O N N 3   
7GU "O5'"  O N N 4   
7GU N9     N Y N 5   
7GU C4     C Y N 6   
7GU N3     N N N 7   
7GU C2     C N N 8   
7GU N2     N N N 9   
7GU N1     N N N 10  
7GU C6     C N N 11  
7GU O6     O N N 12  
7GU C5     C Y N 13  
7GU C7     C Y N 14  
7GU C8     C Y N 15  
7GU "C2'"  C N N 16  
7GU "C5'"  C N N 17  
7GU "C4'"  C N R 18  
7GU "O4'"  O N N 19  
7GU "C1'"  C N R 20  
7GU "C3'"  C N S 21  
7GU "O3'"  O N N 22  
7GU OP3    O N N 23  
7GU HOP2   H N N 24  
7GU HN21   H N N 25  
7GU HN22   H N N 26  
7GU HN1    H N N 27  
7GU H7     H N N 28  
7GU H8     H N N 29  
7GU "H2'"  H N N 30  
7GU "H2''" H N N 31  
7GU "H5'"  H N N 32  
7GU "H5''" H N N 33  
7GU "H4'"  H N N 34  
7GU "H1'"  H N N 35  
7GU "H3'"  H N N 36  
7GU "HO3'" H N N 37  
7GU HOP3   H N N 38  
DA  OP3    O N N 39  
DA  P      P N N 40  
DA  OP1    O N N 41  
DA  OP2    O N N 42  
DA  "O5'"  O N N 43  
DA  "C5'"  C N N 44  
DA  "C4'"  C N R 45  
DA  "O4'"  O N N 46  
DA  "C3'"  C N S 47  
DA  "O3'"  O N N 48  
DA  "C2'"  C N N 49  
DA  "C1'"  C N R 50  
DA  N9     N Y N 51  
DA  C8     C Y N 52  
DA  N7     N Y N 53  
DA  C5     C Y N 54  
DA  C6     C Y N 55  
DA  N6     N N N 56  
DA  N1     N Y N 57  
DA  C2     C Y N 58  
DA  N3     N Y N 59  
DA  C4     C Y N 60  
DA  HOP3   H N N 61  
DA  HOP2   H N N 62  
DA  "H5'"  H N N 63  
DA  "H5''" H N N 64  
DA  "H4'"  H N N 65  
DA  "H3'"  H N N 66  
DA  "HO3'" H N N 67  
DA  "H2'"  H N N 68  
DA  "H2''" H N N 69  
DA  "H1'"  H N N 70  
DA  H8     H N N 71  
DA  H61    H N N 72  
DA  H62    H N N 73  
DA  H2     H N N 74  
DC  OP3    O N N 75  
DC  P      P N N 76  
DC  OP1    O N N 77  
DC  OP2    O N N 78  
DC  "O5'"  O N N 79  
DC  "C5'"  C N N 80  
DC  "C4'"  C N R 81  
DC  "O4'"  O N N 82  
DC  "C3'"  C N S 83  
DC  "O3'"  O N N 84  
DC  "C2'"  C N N 85  
DC  "C1'"  C N R 86  
DC  N1     N N N 87  
DC  C2     C N N 88  
DC  O2     O N N 89  
DC  N3     N N N 90  
DC  C4     C N N 91  
DC  N4     N N N 92  
DC  C5     C N N 93  
DC  C6     C N N 94  
DC  HOP3   H N N 95  
DC  HOP2   H N N 96  
DC  "H5'"  H N N 97  
DC  "H5''" H N N 98  
DC  "H4'"  H N N 99  
DC  "H3'"  H N N 100 
DC  "HO3'" H N N 101 
DC  "H2'"  H N N 102 
DC  "H2''" H N N 103 
DC  "H1'"  H N N 104 
DC  H41    H N N 105 
DC  H42    H N N 106 
DC  H5     H N N 107 
DC  H6     H N N 108 
DG  OP3    O N N 109 
DG  P      P N N 110 
DG  OP1    O N N 111 
DG  OP2    O N N 112 
DG  "O5'"  O N N 113 
DG  "C5'"  C N N 114 
DG  "C4'"  C N R 115 
DG  "O4'"  O N N 116 
DG  "C3'"  C N S 117 
DG  "O3'"  O N N 118 
DG  "C2'"  C N N 119 
DG  "C1'"  C N R 120 
DG  N9     N Y N 121 
DG  C8     C Y N 122 
DG  N7     N Y N 123 
DG  C5     C Y N 124 
DG  C6     C N N 125 
DG  O6     O N N 126 
DG  N1     N N N 127 
DG  C2     C N N 128 
DG  N2     N N N 129 
DG  N3     N N N 130 
DG  C4     C Y N 131 
DG  HOP3   H N N 132 
DG  HOP2   H N N 133 
DG  "H5'"  H N N 134 
DG  "H5''" H N N 135 
DG  "H4'"  H N N 136 
DG  "H3'"  H N N 137 
DG  "HO3'" H N N 138 
DG  "H2'"  H N N 139 
DG  "H2''" H N N 140 
DG  "H1'"  H N N 141 
DG  H8     H N N 142 
DG  H1     H N N 143 
DG  H21    H N N 144 
DG  H22    H N N 145 
DT  OP3    O N N 146 
DT  P      P N N 147 
DT  OP1    O N N 148 
DT  OP2    O N N 149 
DT  "O5'"  O N N 150 
DT  "C5'"  C N N 151 
DT  "C4'"  C N R 152 
DT  "O4'"  O N N 153 
DT  "C3'"  C N S 154 
DT  "O3'"  O N N 155 
DT  "C2'"  C N N 156 
DT  "C1'"  C N R 157 
DT  N1     N N N 158 
DT  C2     C N N 159 
DT  O2     O N N 160 
DT  N3     N N N 161 
DT  C4     C N N 162 
DT  O4     O N N 163 
DT  C5     C N N 164 
DT  C7     C N N 165 
DT  C6     C N N 166 
DT  HOP3   H N N 167 
DT  HOP2   H N N 168 
DT  "H5'"  H N N 169 
DT  "H5''" H N N 170 
DT  "H4'"  H N N 171 
DT  "H3'"  H N N 172 
DT  "HO3'" H N N 173 
DT  "H2'"  H N N 174 
DT  "H2''" H N N 175 
DT  "H1'"  H N N 176 
DT  H3     H N N 177 
DT  H71    H N N 178 
DT  H72    H N N 179 
DT  H73    H N N 180 
DT  H6     H N N 181 
HOH O      O N N 182 
HOH H1     H N N 183 
HOH H2     H N N 184 
ZDU P      P N N 185 
ZDU OP1    O N N 186 
ZDU OP2    O N N 187 
ZDU "O5'"  O N N 188 
ZDU N1     N N N 189 
ZDU C6     C N N 190 
ZDU C2     C N N 191 
ZDU O2     O N N 192 
ZDU N3     N N N 193 
ZDU C4     C N N 194 
ZDU O4     O N N 195 
ZDU C5     C N N 196 
ZDU C5A    C N N 197 
ZDU C5B    C N N 198 
ZDU C5G    C N N 199 
ZDU N5D    N N N 200 
ZDU "C2'"  C N N 201 
ZDU "C5'"  C N N 202 
ZDU "C4'"  C N R 203 
ZDU "O4'"  O N N 204 
ZDU "C1'"  C N R 205 
ZDU "C3'"  C N S 206 
ZDU "O3'"  O N N 207 
ZDU OP3    O N N 208 
ZDU HOP2   H N N 209 
ZDU H6     H N N 210 
ZDU HN3    H N N 211 
ZDU H5A1   H N N 212 
ZDU H5A2   H N N 213 
ZDU H5B1   H N N 214 
ZDU H5B2   H N N 215 
ZDU H5G1   H N N 216 
ZDU H5G2   H N N 217 
ZDU H5D1   H N N 218 
ZDU H5D2   H N N 219 
ZDU "H2'"  H N N 220 
ZDU "H2''" H N N 221 
ZDU "H5'"  H N N 222 
ZDU "H5''" H N N 223 
ZDU "H4'"  H N N 224 
ZDU "H1'"  H N N 225 
ZDU "H3'"  H N N 226 
ZDU "HO3'" H N N 227 
ZDU HOP3   H N N 228 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7GU P     OP1    doub N N 1   
7GU P     OP2    sing N N 2   
7GU P     "O5'"  sing N N 3   
7GU P     OP3    sing N N 4   
7GU OP2   HOP2   sing N N 5   
7GU "O5'" "C5'"  sing N N 6   
7GU N9    C4     sing Y N 7   
7GU N9    C8     sing Y N 8   
7GU N9    "C1'"  sing N N 9   
7GU C4    N3     sing N N 10  
7GU C4    C5     doub Y N 11  
7GU N3    C2     doub N N 12  
7GU C2    N2     sing N N 13  
7GU C2    N1     sing N N 14  
7GU N2    HN21   sing N N 15  
7GU N2    HN22   sing N N 16  
7GU N1    C6     sing N N 17  
7GU N1    HN1    sing N N 18  
7GU C6    O6     doub N N 19  
7GU C6    C5     sing N N 20  
7GU C5    C7     sing Y N 21  
7GU C7    C8     doub Y N 22  
7GU C7    H7     sing N N 23  
7GU C8    H8     sing N N 24  
7GU "C2'" "C1'"  sing N N 25  
7GU "C2'" "C3'"  sing N N 26  
7GU "C2'" "H2'"  sing N N 27  
7GU "C2'" "H2''" sing N N 28  
7GU "C5'" "C4'"  sing N N 29  
7GU "C5'" "H5'"  sing N N 30  
7GU "C5'" "H5''" sing N N 31  
7GU "C4'" "O4'"  sing N N 32  
7GU "C4'" "C3'"  sing N N 33  
7GU "C4'" "H4'"  sing N N 34  
7GU "O4'" "C1'"  sing N N 35  
7GU "C1'" "H1'"  sing N N 36  
7GU "C3'" "O3'"  sing N N 37  
7GU "C3'" "H3'"  sing N N 38  
7GU "O3'" "HO3'" sing N N 39  
7GU OP3   HOP3   sing N N 40  
DA  OP3   P      sing N N 41  
DA  OP3   HOP3   sing N N 42  
DA  P     OP1    doub N N 43  
DA  P     OP2    sing N N 44  
DA  P     "O5'"  sing N N 45  
DA  OP2   HOP2   sing N N 46  
DA  "O5'" "C5'"  sing N N 47  
DA  "C5'" "C4'"  sing N N 48  
DA  "C5'" "H5'"  sing N N 49  
DA  "C5'" "H5''" sing N N 50  
DA  "C4'" "O4'"  sing N N 51  
DA  "C4'" "C3'"  sing N N 52  
DA  "C4'" "H4'"  sing N N 53  
DA  "O4'" "C1'"  sing N N 54  
DA  "C3'" "O3'"  sing N N 55  
DA  "C3'" "C2'"  sing N N 56  
DA  "C3'" "H3'"  sing N N 57  
DA  "O3'" "HO3'" sing N N 58  
DA  "C2'" "C1'"  sing N N 59  
DA  "C2'" "H2'"  sing N N 60  
DA  "C2'" "H2''" sing N N 61  
DA  "C1'" N9     sing N N 62  
DA  "C1'" "H1'"  sing N N 63  
DA  N9    C8     sing Y N 64  
DA  N9    C4     sing Y N 65  
DA  C8    N7     doub Y N 66  
DA  C8    H8     sing N N 67  
DA  N7    C5     sing Y N 68  
DA  C5    C6     sing Y N 69  
DA  C5    C4     doub Y N 70  
DA  C6    N6     sing N N 71  
DA  C6    N1     doub Y N 72  
DA  N6    H61    sing N N 73  
DA  N6    H62    sing N N 74  
DA  N1    C2     sing Y N 75  
DA  C2    N3     doub Y N 76  
DA  C2    H2     sing N N 77  
DA  N3    C4     sing Y N 78  
DC  OP3   P      sing N N 79  
DC  OP3   HOP3   sing N N 80  
DC  P     OP1    doub N N 81  
DC  P     OP2    sing N N 82  
DC  P     "O5'"  sing N N 83  
DC  OP2   HOP2   sing N N 84  
DC  "O5'" "C5'"  sing N N 85  
DC  "C5'" "C4'"  sing N N 86  
DC  "C5'" "H5'"  sing N N 87  
DC  "C5'" "H5''" sing N N 88  
DC  "C4'" "O4'"  sing N N 89  
DC  "C4'" "C3'"  sing N N 90  
DC  "C4'" "H4'"  sing N N 91  
DC  "O4'" "C1'"  sing N N 92  
DC  "C3'" "O3'"  sing N N 93  
DC  "C3'" "C2'"  sing N N 94  
DC  "C3'" "H3'"  sing N N 95  
DC  "O3'" "HO3'" sing N N 96  
DC  "C2'" "C1'"  sing N N 97  
DC  "C2'" "H2'"  sing N N 98  
DC  "C2'" "H2''" sing N N 99  
DC  "C1'" N1     sing N N 100 
DC  "C1'" "H1'"  sing N N 101 
DC  N1    C2     sing N N 102 
DC  N1    C6     sing N N 103 
DC  C2    O2     doub N N 104 
DC  C2    N3     sing N N 105 
DC  N3    C4     doub N N 106 
DC  C4    N4     sing N N 107 
DC  C4    C5     sing N N 108 
DC  N4    H41    sing N N 109 
DC  N4    H42    sing N N 110 
DC  C5    C6     doub N N 111 
DC  C5    H5     sing N N 112 
DC  C6    H6     sing N N 113 
DG  OP3   P      sing N N 114 
DG  OP3   HOP3   sing N N 115 
DG  P     OP1    doub N N 116 
DG  P     OP2    sing N N 117 
DG  P     "O5'"  sing N N 118 
DG  OP2   HOP2   sing N N 119 
DG  "O5'" "C5'"  sing N N 120 
DG  "C5'" "C4'"  sing N N 121 
DG  "C5'" "H5'"  sing N N 122 
DG  "C5'" "H5''" sing N N 123 
DG  "C4'" "O4'"  sing N N 124 
DG  "C4'" "C3'"  sing N N 125 
DG  "C4'" "H4'"  sing N N 126 
DG  "O4'" "C1'"  sing N N 127 
DG  "C3'" "O3'"  sing N N 128 
DG  "C3'" "C2'"  sing N N 129 
DG  "C3'" "H3'"  sing N N 130 
DG  "O3'" "HO3'" sing N N 131 
DG  "C2'" "C1'"  sing N N 132 
DG  "C2'" "H2'"  sing N N 133 
DG  "C2'" "H2''" sing N N 134 
DG  "C1'" N9     sing N N 135 
DG  "C1'" "H1'"  sing N N 136 
DG  N9    C8     sing Y N 137 
DG  N9    C4     sing Y N 138 
DG  C8    N7     doub Y N 139 
DG  C8    H8     sing N N 140 
DG  N7    C5     sing Y N 141 
DG  C5    C6     sing N N 142 
DG  C5    C4     doub Y N 143 
DG  C6    O6     doub N N 144 
DG  C6    N1     sing N N 145 
DG  N1    C2     sing N N 146 
DG  N1    H1     sing N N 147 
DG  C2    N2     sing N N 148 
DG  C2    N3     doub N N 149 
DG  N2    H21    sing N N 150 
DG  N2    H22    sing N N 151 
DG  N3    C4     sing N N 152 
DT  OP3   P      sing N N 153 
DT  OP3   HOP3   sing N N 154 
DT  P     OP1    doub N N 155 
DT  P     OP2    sing N N 156 
DT  P     "O5'"  sing N N 157 
DT  OP2   HOP2   sing N N 158 
DT  "O5'" "C5'"  sing N N 159 
DT  "C5'" "C4'"  sing N N 160 
DT  "C5'" "H5'"  sing N N 161 
DT  "C5'" "H5''" sing N N 162 
DT  "C4'" "O4'"  sing N N 163 
DT  "C4'" "C3'"  sing N N 164 
DT  "C4'" "H4'"  sing N N 165 
DT  "O4'" "C1'"  sing N N 166 
DT  "C3'" "O3'"  sing N N 167 
DT  "C3'" "C2'"  sing N N 168 
DT  "C3'" "H3'"  sing N N 169 
DT  "O3'" "HO3'" sing N N 170 
DT  "C2'" "C1'"  sing N N 171 
DT  "C2'" "H2'"  sing N N 172 
DT  "C2'" "H2''" sing N N 173 
DT  "C1'" N1     sing N N 174 
DT  "C1'" "H1'"  sing N N 175 
DT  N1    C2     sing N N 176 
DT  N1    C6     sing N N 177 
DT  C2    O2     doub N N 178 
DT  C2    N3     sing N N 179 
DT  N3    C4     sing N N 180 
DT  N3    H3     sing N N 181 
DT  C4    O4     doub N N 182 
DT  C4    C5     sing N N 183 
DT  C5    C7     sing N N 184 
DT  C5    C6     doub N N 185 
DT  C7    H71    sing N N 186 
DT  C7    H72    sing N N 187 
DT  C7    H73    sing N N 188 
DT  C6    H6     sing N N 189 
HOH O     H1     sing N N 190 
HOH O     H2     sing N N 191 
ZDU P     OP1    doub N N 192 
ZDU P     OP2    sing N N 193 
ZDU P     "O5'"  sing N N 194 
ZDU P     OP3    sing N N 195 
ZDU OP2   HOP2   sing N N 196 
ZDU "O5'" "C5'"  sing N N 197 
ZDU N1    C6     sing N N 198 
ZDU N1    C2     sing N N 199 
ZDU N1    "C1'"  sing N N 200 
ZDU C6    C5     doub N N 201 
ZDU C6    H6     sing N N 202 
ZDU C2    O2     doub N N 203 
ZDU C2    N3     sing N N 204 
ZDU N3    C4     sing N N 205 
ZDU N3    HN3    sing N N 206 
ZDU C4    O4     doub N N 207 
ZDU C4    C5     sing N N 208 
ZDU C5    C5A    sing N N 209 
ZDU C5A   C5B    sing N N 210 
ZDU C5A   H5A1   sing N N 211 
ZDU C5A   H5A2   sing N N 212 
ZDU C5B   C5G    sing N N 213 
ZDU C5B   H5B1   sing N N 214 
ZDU C5B   H5B2   sing N N 215 
ZDU C5G   N5D    sing N N 216 
ZDU C5G   H5G1   sing N N 217 
ZDU C5G   H5G2   sing N N 218 
ZDU N5D   H5D1   sing N N 219 
ZDU N5D   H5D2   sing N N 220 
ZDU "C2'" "C1'"  sing N N 221 
ZDU "C2'" "C3'"  sing N N 222 
ZDU "C2'" "H2'"  sing N N 223 
ZDU "C2'" "H2''" sing N N 224 
ZDU "C5'" "C4'"  sing N N 225 
ZDU "C5'" "H5'"  sing N N 226 
ZDU "C5'" "H5''" sing N N 227 
ZDU "C4'" "O4'"  sing N N 228 
ZDU "C4'" "C3'"  sing N N 229 
ZDU "C4'" "H4'"  sing N N 230 
ZDU "O4'" "C1'"  sing N N 231 
ZDU "C1'" "H1'"  sing N N 232 
ZDU "C3'" "O3'"  sing N N 233 
ZDU "C3'" "H3'"  sing N N 234 
ZDU "O3'" "HO3'" sing N N 235 
ZDU OP3   HOP3   sing N N 236 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2QEF 'double helix'        
2QEF 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC  1  1_555 B DG  12 1_555 0.234  -0.178 -0.113 5.256   -5.479  -0.051 1  A_DC1:DG12_B  A 1  ? B 12 ? 19 1 
1 A DG  2  1_555 B DC  11 1_555 -0.250 -0.168 0.124  -0.058  -4.828  -3.973 2  A_DG2:DC11_B  A 2  ? B 11 ? 19 1 
1 A DC  3  1_555 B 7GU 10 1_555 0.172  -0.110 0.036  1.056   -9.050  2.361  3  A_DC3:7GU10_B A 3  ? B 10 ? 19 1 
1 A DG  4  1_555 B DC  9  1_555 -0.339 -0.173 0.018  10.791  -13.483 1.252  4  A_DG4:DC9_B   A 4  ? B 9  ? 19 1 
1 A DA  5  1_555 B ZDU 8  1_555 0.064  -0.173 -0.046 6.170   -11.714 1.101  5  A_DA5:ZDU8_B  A 5  ? B 8  ? 20 1 
1 A DA  6  1_555 B DT  7  1_555 -0.021 -0.031 0.084  1.716   -16.396 5.155  6  A_DA6:DT7_B   A 6  ? B 7  ? 20 1 
1 A DT  7  1_555 B DA  6  1_555 0.019  -0.096 0.180  -1.905  -16.204 5.463  7  A_DT7:DA6_B   A 7  ? B 6  ? 20 1 
1 A ZDU 8  1_555 B DA  5  1_555 0.007  -0.106 0.065  -3.652  -11.225 3.955  8  A_ZDU8:DA5_B  A 8  ? B 5  ? 20 1 
1 A DC  9  1_555 B DG  4  1_555 0.260  -0.146 0.143  -10.537 -10.463 -0.849 9  A_DC9:DG4_B   A 9  ? B 4  ? 19 1 
1 A 7GU 10 1_555 B DC  3  1_555 -0.071 -0.138 0.359  5.878   -4.913  1.904  10 A_7GU10:DC3_B A 10 ? B 3  ? 19 1 
1 A DC  11 1_555 B DG  2  1_555 0.071  -0.199 0.167  1.121   -11.642 -0.799 11 A_DC11:DG2_B  A 11 ? B 2  ? 19 1 
1 A DG  12 1_555 B DC  1  1_555 -0.240 -0.147 0.263  10.870  -7.259  -0.682 12 A_DG12:DC1_B  A 12 ? B 1  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC  1  1_555 B DG  12 1_555 A DG  2  1_555 B DC  11 1_555 -0.938 -0.150 3.516 -4.418 -2.767 34.867 0.201  0.831  3.605 -4.586 
7.323  35.242 1  AA_DC1DG2:DC11DG12_BB  A 1  ? B 12 ? A 2  ? B 11 ? 
1 A DG  2  1_555 B DC  11 1_555 A DC  3  1_555 B 7GU 10 1_555 0.501  -0.290 3.298 2.033  3.279  35.782 -0.940 -0.519 3.282 5.317  
-3.297 35.982 2  AA_DG2DC3:7GU10DC11_BB A 2  ? B 11 ? A 3  ? B 10 ? 
1 A DC  3  1_555 B 7GU 10 1_555 A DG  4  1_555 B DC  9  1_555 -0.345 0.791  3.163 0.581  13.168 29.632 -0.952 0.723  3.210 24.289 
-1.073 32.372 3  AA_DC3DG4:DC97GU10_BB  A 3  ? B 10 ? A 4  ? B 9  ? 
1 A DG  4  1_555 B DC  9  1_555 A DA  5  1_555 B ZDU 8  1_555 0.326  -0.120 3.415 1.234  -1.036 35.737 -0.039 -0.345 3.426 -1.688 
-2.010 35.773 4  AA_DG4DA5:ZDU8DC9_BB   A 4  ? B 9  ? A 5  ? B 8  ? 
1 A DA  5  1_555 B ZDU 8  1_555 A DA  6  1_555 B DT  7  1_555 -0.181 -0.161 3.302 -2.199 0.001  38.289 -0.245 -0.002 3.307 0.001  
3.348  38.350 5  AA_DA5DA6:DT7ZDU8_BB   A 5  ? B 8  ? A 6  ? B 7  ? 
1 A DA  6  1_555 B DT  7  1_555 A DT  7  1_555 B DA  6  1_555 0.000  -0.509 3.337 -0.788 -3.735 34.490 -0.265 -0.124 3.371 -6.275 
1.324  34.694 6  AA_DA6DT7:DA6DT7_BB    A 6  ? B 7  ? A 7  ? B 6  ? 
1 A DT  7  1_555 B DA  6  1_555 A ZDU 8  1_555 B DA  5  1_555 -0.008 -0.420 3.239 1.501  -1.605 34.297 -0.462 0.246  3.252 -2.718 
-2.543 34.366 7  AA_DT7ZDU8:DA5DA6_BB   A 7  ? B 6  ? A 8  ? B 5  ? 
1 A ZDU 8  1_555 B DA  5  1_555 A DC  9  1_555 B DG  4  1_555 -0.141 -0.202 3.440 1.187  -3.646 42.850 0.104  0.316  3.440 -4.979 
-1.621 43.013 8  AA_ZDU8DC9:DG4DA5_BB   A 8  ? B 5  ? A 9  ? B 4  ? 
1 A DC  9  1_555 B DG  4  1_555 A 7GU 10 1_555 B DC  3  1_555 0.642  0.582  3.023 -2.861 1.338  26.752 0.936  -2.051 2.965 2.880  
6.156  26.935 9  AA_DC97GU10:DC3DG4_BB  A 9  ? B 4  ? A 10 ? B 3  ? 
1 A 7GU 10 1_555 B DC  3  1_555 A DC  11 1_555 B DG  2  1_555 -1.459 0.510  3.463 -0.929 -6.310 42.628 1.350  1.891  3.387 -8.621 
1.269  43.080 10 AA_7GU10DC11:DG2DC3_BB A 10 ? B 3  ? A 11 ? B 2  ? 
1 A DC  11 1_555 B DG  2  1_555 A DG  12 1_555 B DC  1  1_555 0.907  0.531  3.164 0.042  1.948  31.976 0.620  -1.636 3.191 3.532  
-0.076 32.034 11 AA_DC11DG12:DC1DG2_BB  A 11 ? B 2  ? A 12 ? B 1  ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   355D 
_pdbx_initial_refinement_model.details          ? 
#