HEADER TRANSPORT PROTEIN 26-JUN-07 2QEL TITLE CRYSTAL STRUCTURE OF THE HIGHLY AMYLOIDOGENIC TRANSTHYRETIN MUTANT TTR TITLE 2 G53S/E54D/L55S- HEATED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PREALBUMIN, TBPA, TTR, ATTR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3 KEYWDS GREEK KEY, BETA BARREL, BETA-SLIP, PROTEIN HEATING, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KARLSSON,A.E.SAUER-ERIKSSON REVDAT 6 30-AUG-23 2QEL 1 REMARK REVDAT 5 20-OCT-21 2QEL 1 SEQADV REVDAT 4 07-MAR-18 2QEL 1 REMARK REVDAT 3 13-JUL-11 2QEL 1 VERSN REVDAT 2 24-FEB-09 2QEL 1 VERSN REVDAT 1 04-SEP-07 2QEL 0 JRNL AUTH A.KARLSSON,A.E.SAUER-ERIKSSON JRNL TITL HEATING OF PROTEINS AS A MEANS OF IMPROVING CRYSTALLIZATION: JRNL TITL 2 A SUCCESSFUL CASE STUDY ON A HIGHLY AMYLOIDOGENIC TRIPLE JRNL TITL 3 MUTANT OF HUMAN TRANSTHYRETIN JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 63 695 2007 JRNL REFN ESSN 1744-3091 JRNL PMID 17671371 JRNL DOI 10.1107/S1744309107033957 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.ENEQVIST,K.ANDERSSON,A.OLOFSSON,E.LUNDGREN, REMARK 1 AUTH 2 A.E.SAUER-ERIKSSON REMARK 1 TITL THE BETA-SLIP: A NEW CONCEPT IN TRANSTHYRETIN AMYLOIDOSIS REMARK 1 REF MOL.CELL V. 6 1207 2000 REMARK 1 REFN ISSN 1097-2765 REMARK 1 PMID 11106758 REMARK 1 DOI 10.1016/S1097-2765(00)00117-9 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.HORNBERG,T.ENEQVIST,A.OLOFSSON,E.LUNDGREN, REMARK 1 AUTH 2 A.E.SAUER-ERIKSSON REMARK 1 TITL A COMPARATIVE ANALYSIS OF 23 STRUCTURES OF THE AMYLOIDOGENIC REMARK 1 TITL 2 PROTEIN TRANSTHYRETIN REMARK 1 REF J.MOL.BIOL. V. 302 649 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 10986125 REMARK 1 DOI 10.1006/JMBI.2000.4078 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 19892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.02000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.671 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3577 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4891 ; 1.567 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 6.758 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;35.277 ;23.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;17.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.246 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 562 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2715 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1376 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2275 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 238 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.285 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2346 ; 2.519 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3699 ; 4.443 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1425 ; 3.255 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1191 ; 4.471 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0840 9.1050 -25.7410 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0494 REMARK 3 T33: -0.0506 T12: -0.0252 REMARK 3 T13: -0.0020 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.5729 L22: 2.5628 REMARK 3 L33: 1.5837 L12: 0.5201 REMARK 3 L13: 0.6749 L23: -0.4602 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.1732 S13: 0.0241 REMARK 3 S21: 0.2017 S22: -0.1923 S23: -0.2102 REMARK 3 S31: -0.1719 S32: 0.3935 S33: 0.1875 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -33.6380 8.9090 -23.8900 REMARK 3 T TENSOR REMARK 3 T11: -0.0621 T22: -0.0324 REMARK 3 T33: -0.0894 T12: 0.0404 REMARK 3 T13: 0.0173 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.1021 L22: 1.1232 REMARK 3 L33: 4.8885 L12: 0.0012 REMARK 3 L13: 1.4130 L23: -1.8575 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.0380 S13: -0.0025 REMARK 3 S21: 0.0775 S22: 0.1366 S23: 0.0360 REMARK 3 S31: -0.1514 S32: -0.1093 S33: -0.1139 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 12 C 125 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8270 -11.5430 -10.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.0763 REMARK 3 T33: -0.0633 T12: 0.0965 REMARK 3 T13: -0.0054 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.0189 L22: 1.9529 REMARK 3 L33: 5.4561 L12: 0.0685 REMARK 3 L13: 0.0879 L23: -0.4564 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0649 S13: -0.1352 REMARK 3 S21: 0.0173 S22: 0.0042 S23: -0.1346 REMARK 3 S31: 0.6685 S32: 0.8293 S33: 0.0175 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 10 D 125 REMARK 3 ORIGIN FOR THE GROUP (A): -32.7560 -14.2270 -14.8050 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: -0.0134 REMARK 3 T33: -0.1123 T12: -0.0324 REMARK 3 T13: -0.0022 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.5398 L22: 0.0405 REMARK 3 L33: 4.9802 L12: 0.1460 REMARK 3 L13: -1.6129 L23: 0.1435 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.0042 S13: -0.0171 REMARK 3 S21: -0.0290 S22: -0.0386 S23: -0.0254 REMARK 3 S31: 0.3060 S32: -0.1834 S33: 0.0179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 76.472 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : 0.11400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : 0.55400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1G1O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 2.4M AMMONIUM SULPHATE, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.77333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.38667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.38667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 152.77333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 CYS A 10 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 CYS B 10 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 GLY C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 LYS C 9 REMARK 465 CYS C 10 REMARK 465 PRO C 11 REMARK 465 LYS C 126 REMARK 465 GLU C 127 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 THR D 3 REMARK 465 GLY D 4 REMARK 465 THR D 5 REMARK 465 GLY D 6 REMARK 465 GLU D 7 REMARK 465 SER D 8 REMARK 465 LYS D 9 REMARK 465 LYS D 126 REMARK 465 GLU D 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 50 OG REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 SER A 52 OG REMARK 470 SER A 53 OG REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 SER A 55 OG REMARK 470 HIS A 56 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 58 CG CD1 CD2 REMARK 470 THR A 59 OG1 CG2 REMARK 470 THR A 60 OG1 CG2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 SER C 50 OG REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 SER C 52 OG REMARK 470 SER C 53 OG REMARK 470 ASP C 54 CG OD1 OD2 REMARK 470 SER C 55 OG REMARK 470 HIS C 56 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 58 CG CD1 CD2 REMARK 470 THR C 59 OG1 CG2 REMARK 470 THR C 60 OG1 CG2 REMARK 470 GLU C 61 CG CD OE1 OE2 REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 GLU C 63 CG CD OE1 OE2 REMARK 470 PHE C 64 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA C 97 OH TYR C 105 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 18 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 37 -7.91 -57.91 REMARK 500 PHE A 44 -56.34 -133.02 REMARK 500 SER A 53 -158.24 67.57 REMARK 500 HIS A 90 -171.68 -170.36 REMARK 500 ALA B 37 176.48 177.47 REMARK 500 ASP B 38 115.42 -32.69 REMARK 500 SER B 52 68.20 -108.09 REMARK 500 SER B 53 -113.36 56.97 REMARK 500 ASP C 39 -13.13 60.73 REMARK 500 PHE C 44 -41.88 -143.45 REMARK 500 SER C 46 -163.52 -126.16 REMARK 500 SER C 53 -74.85 58.60 REMARK 500 GLU C 61 72.74 -108.56 REMARK 500 GLU C 63 60.81 -110.37 REMARK 500 HIS C 90 171.54 179.26 REMARK 500 ASP D 39 -25.21 88.29 REMARK 500 THR D 40 137.19 -34.58 REMARK 500 SER D 52 107.11 176.97 REMARK 500 SER D 53 -136.89 82.35 REMARK 500 SER D 55 82.22 -69.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G1O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HIGHLY AMYLOIDOGENIC TRANSTHYRETIN MUTANT REMARK 900 TTR G53S/E54D/L55S - NON-HEATED PROTEIN DBREF 2QEL A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 2QEL B 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 2QEL C 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 2QEL D 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 2QEL SER A 53 UNP P02766 GLY 73 ENGINEERED MUTATION SEQADV 2QEL ASP A 54 UNP P02766 GLU 74 ENGINEERED MUTATION SEQADV 2QEL SER A 55 UNP P02766 LEU 75 ENGINEERED MUTATION SEQADV 2QEL SER B 53 UNP P02766 GLY 73 ENGINEERED MUTATION SEQADV 2QEL ASP B 54 UNP P02766 GLU 74 ENGINEERED MUTATION SEQADV 2QEL SER B 55 UNP P02766 LEU 75 ENGINEERED MUTATION SEQADV 2QEL SER C 53 UNP P02766 GLY 73 ENGINEERED MUTATION SEQADV 2QEL ASP C 54 UNP P02766 GLU 74 ENGINEERED MUTATION SEQADV 2QEL SER C 55 UNP P02766 LEU 75 ENGINEERED MUTATION SEQADV 2QEL SER D 53 UNP P02766 GLY 73 ENGINEERED MUTATION SEQADV 2QEL ASP D 54 UNP P02766 GLU 74 ENGINEERED MUTATION SEQADV 2QEL SER D 55 UNP P02766 LEU 75 ENGINEERED MUTATION SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 SER ASP SER HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 SER ASP SER HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 C 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 C 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 C 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 C 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 C 127 SER ASP SER HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 C 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 C 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 C 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 C 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 C 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 D 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 D 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 D 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 D 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 D 127 SER ASP SER HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 D 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 D 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 D 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 D 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 D 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU FORMUL 5 HOH *150(H2 O) HELIX 1 1 ASP A 74 ALA A 81 1 8 HELIX 2 2 ASP B 74 ALA B 81 1 8 HELIX 3 3 ASP C 74 ALA C 81 1 8 HELIX 4 4 ALA D 37 ASP D 39 5 3 HELIX 5 5 THR D 75 ALA D 81 1 7 SHEET 1 A 8 SER A 23 PRO A 24 0 SHEET 2 A 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 A 8 ARG A 104 SER A 112 1 O ILE A 107 N MET A 13 SHEET 4 A 8 SER A 115 THR A 123 -1 O VAL A 121 N THR A 106 SHEET 5 A 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 A 8 ARG B 104 SER B 112 -1 N THR B 106 O VAL B 121 SHEET 7 A 8 LEU B 12 ASP B 18 1 N LYS B 15 O ALA B 109 SHEET 8 A 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 B 8 GLY A 57 THR A 60 0 SHEET 2 B 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 58 SHEET 3 B 8 ARG A 104 SER A 112 1 O ILE A 107 N MET A 13 SHEET 4 B 8 SER A 115 THR A 123 -1 O VAL A 121 N THR A 106 SHEET 5 B 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 B 8 ARG B 104 SER B 112 -1 N THR B 106 O VAL B 121 SHEET 7 B 8 LEU B 12 ASP B 18 1 N LYS B 15 O ALA B 109 SHEET 8 B 8 LEU B 58 THR B 60 -1 O LEU B 58 N VAL B 14 SHEET 1 C 4 TRP A 41 LYS A 48 0 SHEET 2 C 4 ALA A 29 LYS A 35 -1 N VAL A 30 O GLY A 47 SHEET 3 C 4 GLY A 67 ILE A 73 -1 O LYS A 70 N PHE A 33 SHEET 4 C 4 ALA A 91 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 1 D 4 THR B 40 LYS B 48 0 SHEET 2 D 4 ALA B 29 ALA B 37 -1 N ALA B 36 O THR B 40 SHEET 3 D 4 GLY B 67 ILE B 73 -1 O GLU B 72 N HIS B 31 SHEET 4 D 4 ALA B 91 ALA B 97 -1 O ALA B 97 N GLY B 67 SHEET 1 E 8 SER C 23 PRO C 24 0 SHEET 2 E 8 MET C 13 ASP C 18 -1 N ASP C 18 O SER C 23 SHEET 3 E 8 ARG C 104 SER C 112 1 O ILE C 107 N MET C 13 SHEET 4 E 8 SER C 115 THR C 123 -1 O THR C 119 N ALA C 108 SHEET 5 E 8 SER D 115 THR D 123 -1 O THR D 118 N TYR C 116 SHEET 6 E 8 ARG D 104 SER D 112 -1 N ARG D 104 O THR D 123 SHEET 7 E 8 LEU D 12 ASP D 18 1 N LEU D 17 O ALA D 109 SHEET 8 E 8 SER D 23 PRO D 24 -1 O SER D 23 N ASP D 18 SHEET 1 F 8 GLY C 57 THR C 59 0 SHEET 2 F 8 MET C 13 ASP C 18 -1 N VAL C 14 O LEU C 58 SHEET 3 F 8 ARG C 104 SER C 112 1 O ILE C 107 N MET C 13 SHEET 4 F 8 SER C 115 THR C 123 -1 O THR C 119 N ALA C 108 SHEET 5 F 8 SER D 115 THR D 123 -1 O THR D 118 N TYR C 116 SHEET 6 F 8 ARG D 104 SER D 112 -1 N ARG D 104 O THR D 123 SHEET 7 F 8 LEU D 12 ASP D 18 1 N LEU D 17 O ALA D 109 SHEET 8 F 8 LEU D 58 THR D 60 -1 O LEU D 58 N VAL D 14 SHEET 1 G 8 TRP C 41 ALA C 45 0 SHEET 2 G 8 VAL C 30 LYS C 35 -1 N ARG C 34 O GLU C 42 SHEET 3 G 8 ILE C 68 ILE C 73 -1 O GLU C 72 N HIS C 31 SHEET 4 G 8 ALA C 91 THR C 96 -1 O PHE C 95 N TYR C 69 SHEET 5 G 8 HIS D 88 ALA D 97 -1 O GLU D 89 N VAL C 94 SHEET 6 G 8 GLY D 67 ILE D 73 -1 N GLY D 67 O ALA D 97 SHEET 7 G 8 ALA D 29 LYS D 35 -1 N HIS D 31 O GLU D 72 SHEET 8 G 8 TRP D 41 LYS D 48 -1 O GLU D 42 N ARG D 34 CRYST1 58.360 58.360 229.160 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017135 0.009893 0.000000 0.00000 SCALE2 0.000000 0.019786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004364 0.00000