HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-07 2QGY TITLE CRYSTAL STRUCTURE OF AN ENOLASE FROM THE ENVIRONMENTAL GENOME SHOTGUN TITLE 2 SEQUENCING OF THE SARGASSO SEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE FROM THE ENVIRONMENTAL GENOME SHOTGUN SEQUENCING OF COMPND 3 THE SARGASSO SEA; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_COMMON: ENVIRONMENTAL SAMPLE; SOURCE 3 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 4 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.GILMORE,K.T.BAIN,C.LAU,R.ROMERO,D.SMITH,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 2QGY 1 REMARK REVDAT 5 03-FEB-21 2QGY 1 AUTHOR JRNL REMARK LINK REVDAT 4 14-NOV-18 2QGY 1 AUTHOR REVDAT 3 18-OCT-17 2QGY 1 REMARK REVDAT 2 24-FEB-09 2QGY 1 VERSN REVDAT 1 24-JUL-07 2QGY 0 JRNL AUTH J.B.BONANNO,M.GILMORE,K.T.BAIN,C.LAU,R.ROMERO,D.SMITH, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN ENOLASE FROM THE ENVIRONMENTAL JRNL TITL 2 GENOME SHOTGUN SEQUENCING OF THE SARGASSO SEA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 562 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6154 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8340 ; 1.415 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 773 ; 5.607 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;38.094 ;25.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1147 ;13.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.936 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 942 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4550 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3017 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4318 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 485 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.125 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.160 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3904 ; 0.944 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6163 ; 1.534 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2581 ; 2.551 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2166 ; 3.935 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69393 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 74.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : 0.63400 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.2, 25% PEG 3350, 200 REMARK 280 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.57650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.57650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.31800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.58400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.31800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.58400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.57650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.31800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.58400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.57650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.31800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.58400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE DIMERIC ASSEMBLY SHOWN REMARK 300 IN REMARK 350 IS PREDICTED BY THE ANALYSIS OF PROTEIN REMARK 300 INTERFACES BASED ON THIS CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 897 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 745 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 865 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 921 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 988 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 ASN A 2 REMARK 465 SER A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 GLU A 382 REMARK 465 GLY A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 SER B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 GLU B 382 REMARK 465 GLY B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 986 O HOH B 991 2.00 REMARK 500 O HOH A 821 O HOH A 827 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 -0.94 72.98 REMARK 500 ARG A 95 -132.12 -111.31 REMARK 500 SER A 129 72.78 85.88 REMARK 500 LEU A 172 -160.47 -110.53 REMARK 500 VAL A 201 70.77 57.16 REMARK 500 ASN A 243 50.36 -100.98 REMARK 500 SER A 306 -96.31 -102.84 REMARK 500 ASP A 347 -116.26 51.29 REMARK 500 PHE B 56 -0.85 79.58 REMARK 500 LEU B 172 -156.67 -111.18 REMARK 500 VAL B 201 70.35 56.71 REMARK 500 CYS B 301 64.67 -150.02 REMARK 500 SER B 306 -98.13 -103.55 REMARK 500 ASP B 347 -114.41 52.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 198 OD2 REMARK 620 2 GLU A 224 OE2 86.5 REMARK 620 3 GLU A 250 OE1 169.0 84.3 REMARK 620 4 HOH A 956 O 93.6 169.0 96.5 REMARK 620 5 HOH A 968 O 87.7 108.5 89.5 82.4 REMARK 620 6 HOH A 971 O 82.2 88.1 103.6 81.0 160.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 198 OD2 REMARK 620 2 GLU B 224 OE2 85.1 REMARK 620 3 GLU B 250 OE1 171.5 89.3 REMARK 620 4 HOH B 758 O 81.9 90.2 104.5 REMARK 620 5 HOH B 981 O 97.6 167.5 89.3 78.2 REMARK 620 6 HOH B 994 O 87.7 108.9 88.2 157.4 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 265 OD1 REMARK 620 2 ASN B 265 OD1 90.8 REMARK 620 3 HOH B 745 O 136.3 132.9 REMARK 620 4 HOH B 745 O 136.4 132.9 0.1 REMARK 620 5 HOH B 765 O 96.7 79.8 91.9 91.8 REMARK 620 6 HOH B 765 O 81.4 96.0 92.4 92.5 175.4 REMARK 620 7 HOH B 801 O 160.1 69.3 63.6 63.5 81.9 98.5 REMARK 620 8 HOH B 801 O 71.4 162.1 64.9 64.9 99.8 83.7 128.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9384A RELATED DB: TARGETDB DBREF 2QGY A -1 389 PDB 2QGY 2QGY -1 389 DBREF 2QGY B -1 389 PDB 2QGY 2QGY -1 389 SEQRES 1 A 391 MET SER LEU ASN ASN GLN ASP ILE SER ILE GLY LYS LEU SEQRES 2 A 391 SER ARG LEU LYS ILE TRP ILE THR ASP ASN HIS LEU SER SEQRES 3 A 391 ASP ASP GLN TRP SER ASN THR LYS LYS PHE ILE ILE ILE SEQRES 4 A 391 LYS ILE THR THR GLU ASP GLY ILE GLU GLY TRP GLY GLU SEQRES 5 A 391 ALA PHE SER ILE ASN PHE ARG GLU LYS GLY ILE ALA ILE SEQRES 6 A 391 ILE ILE LYS GLU LEU PHE ARG GLU ILE SER ASN ILE PRO SEQRES 7 A 391 ASN LEU SER ILE LYS SER PHE TYR ASN LYS ILE SER LEU SEQRES 8 A 391 LEU SER ASP GLY HIS ARG GLY LEU ASP PHE SER SER ALA SEQRES 9 A 391 THR SER ALA ILE GLU ILE ALA LEU TRP ASP ILE SER GLY SEQRES 10 A 391 LYS LEU LYS ASN LEU PRO LEU ASN SER LEU LEU THR LYS SEQRES 11 A 391 SER PRO LYS PRO ASN VAL PRO ILE TYR ALA THR CYS TRP SEQRES 12 A 391 SER ASP LEU LYS LYS ASP THR ASN ASP TYR LEU ARG GLN SEQRES 13 A 391 ILE GLU LYS PHE TYR GLY LYS LYS TYR GLY GLY ILE LYS SEQRES 14 A 391 ILE TYR PRO MET LEU ASP SER LEU SER ILE SER ILE GLN SEQRES 15 A 391 PHE VAL GLU LYS VAL ARG GLU ILE VAL GLY ASP GLU LEU SEQRES 16 A 391 PRO LEU MET LEU ASP LEU ALA VAL PRO GLU ASP LEU ASP SEQRES 17 A 391 GLN THR LYS SER PHE LEU LYS GLU VAL SER SER PHE ASN SEQRES 18 A 391 PRO TYR TRP ILE GLU GLU PRO VAL ASP GLY GLU ASN ILE SEQRES 19 A 391 SER LEU LEU THR GLU ILE LYS ASN THR PHE ASN MET LYS SEQRES 20 A 391 VAL VAL THR GLY GLU LYS GLN SER GLY LEU VAL HIS PHE SEQRES 21 A 391 ARG GLU LEU ILE SER ARG ASN ALA ALA ASP ILE PHE ASN SEQRES 22 A 391 PRO ASP ILE SER GLY MET GLY GLY LEU ILE ASP ILE ILE SEQRES 23 A 391 GLU ILE SER ASN GLU ALA SER ASN ASN GLY ILE PHE ILE SEQRES 24 A 391 SER PRO HIS CYS TRP ASN SER MET SER VAL SER ALA SER SEQRES 25 A 391 ALA MET LEU HIS VAL CYS SER SER ILE PRO ASN SER GLU SEQRES 26 A 391 LYS ALA GLU ILE PHE PRO ASP TYR ILE ASN PHE SER LYS SEQRES 27 A 391 LYS PHE CYS GLU LEU PRO PHE ASP ILE ILE ASP ASN LYS SEQRES 28 A 391 ALA HIS ILE ASN LYS SER ALA GLY LEU GLY ILE VAL ILE SEQRES 29 A 391 HIS GLU ASP ILE LEU SER GLU LEU SER ILE TYR SER LEU SEQRES 30 A 391 ASP GLU LYS SER ASN ASP GLU GLY HIS HIS HIS HIS HIS SEQRES 31 A 391 HIS SEQRES 1 B 391 MET SER LEU ASN ASN GLN ASP ILE SER ILE GLY LYS LEU SEQRES 2 B 391 SER ARG LEU LYS ILE TRP ILE THR ASP ASN HIS LEU SER SEQRES 3 B 391 ASP ASP GLN TRP SER ASN THR LYS LYS PHE ILE ILE ILE SEQRES 4 B 391 LYS ILE THR THR GLU ASP GLY ILE GLU GLY TRP GLY GLU SEQRES 5 B 391 ALA PHE SER ILE ASN PHE ARG GLU LYS GLY ILE ALA ILE SEQRES 6 B 391 ILE ILE LYS GLU LEU PHE ARG GLU ILE SER ASN ILE PRO SEQRES 7 B 391 ASN LEU SER ILE LYS SER PHE TYR ASN LYS ILE SER LEU SEQRES 8 B 391 LEU SER ASP GLY HIS ARG GLY LEU ASP PHE SER SER ALA SEQRES 9 B 391 THR SER ALA ILE GLU ILE ALA LEU TRP ASP ILE SER GLY SEQRES 10 B 391 LYS LEU LYS ASN LEU PRO LEU ASN SER LEU LEU THR LYS SEQRES 11 B 391 SER PRO LYS PRO ASN VAL PRO ILE TYR ALA THR CYS TRP SEQRES 12 B 391 SER ASP LEU LYS LYS ASP THR ASN ASP TYR LEU ARG GLN SEQRES 13 B 391 ILE GLU LYS PHE TYR GLY LYS LYS TYR GLY GLY ILE LYS SEQRES 14 B 391 ILE TYR PRO MET LEU ASP SER LEU SER ILE SER ILE GLN SEQRES 15 B 391 PHE VAL GLU LYS VAL ARG GLU ILE VAL GLY ASP GLU LEU SEQRES 16 B 391 PRO LEU MET LEU ASP LEU ALA VAL PRO GLU ASP LEU ASP SEQRES 17 B 391 GLN THR LYS SER PHE LEU LYS GLU VAL SER SER PHE ASN SEQRES 18 B 391 PRO TYR TRP ILE GLU GLU PRO VAL ASP GLY GLU ASN ILE SEQRES 19 B 391 SER LEU LEU THR GLU ILE LYS ASN THR PHE ASN MET LYS SEQRES 20 B 391 VAL VAL THR GLY GLU LYS GLN SER GLY LEU VAL HIS PHE SEQRES 21 B 391 ARG GLU LEU ILE SER ARG ASN ALA ALA ASP ILE PHE ASN SEQRES 22 B 391 PRO ASP ILE SER GLY MET GLY GLY LEU ILE ASP ILE ILE SEQRES 23 B 391 GLU ILE SER ASN GLU ALA SER ASN ASN GLY ILE PHE ILE SEQRES 24 B 391 SER PRO HIS CYS TRP ASN SER MET SER VAL SER ALA SER SEQRES 25 B 391 ALA MET LEU HIS VAL CYS SER SER ILE PRO ASN SER GLU SEQRES 26 B 391 LYS ALA GLU ILE PHE PRO ASP TYR ILE ASN PHE SER LYS SEQRES 27 B 391 LYS PHE CYS GLU LEU PRO PHE ASP ILE ILE ASP ASN LYS SEQRES 28 B 391 ALA HIS ILE ASN LYS SER ALA GLY LEU GLY ILE VAL ILE SEQRES 29 B 391 HIS GLU ASP ILE LEU SER GLU LEU SER ILE TYR SER LEU SEQRES 30 B 391 ASP GLU LYS SER ASN ASP GLU GLY HIS HIS HIS HIS HIS SEQRES 31 B 391 HIS HET MG A 701 1 HET MG B 702 1 HET MG B 703 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *562(H2 O) HELIX 1 1 SER A 24 TRP A 28 5 5 HELIX 2 2 ARG A 57 SER A 73 1 17 HELIX 3 3 SER A 79 ASP A 92 1 14 HELIX 4 4 GLY A 96 ASN A 119 1 24 HELIX 5 5 PRO A 121 THR A 127 1 7 HELIX 6 6 ASP A 147 LYS A 161 1 15 HELIX 7 7 SER A 174 GLY A 190 1 17 HELIX 8 8 ASP A 204 SER A 216 1 13 HELIX 9 9 SER A 217 ASN A 219 5 3 HELIX 10 10 ASN A 231 PHE A 242 1 12 HELIX 11 11 GLY A 254 ARG A 264 1 11 HELIX 12 12 GLY A 279 ASN A 293 1 15 HELIX 13 13 SER A 306 ILE A 319 1 14 HELIX 14 14 PHE A 328 ASP A 330 5 3 HELIX 15 15 TYR A 331 LYS A 337 1 7 HELIX 16 16 HIS A 363 LEU A 370 1 8 HELIX 17 17 ARG B 57 SER B 73 1 17 HELIX 18 18 SER B 79 ASP B 92 1 14 HELIX 19 19 GLY B 96 ASN B 119 1 24 HELIX 20 20 PRO B 121 THR B 127 1 7 HELIX 21 21 ASP B 147 LYS B 161 1 15 HELIX 22 22 SER B 174 GLY B 190 1 17 HELIX 23 23 ASP B 204 SER B 216 1 13 HELIX 24 24 SER B 217 ASN B 219 5 3 HELIX 25 25 ASN B 231 PHE B 242 1 12 HELIX 26 26 GLY B 254 ARG B 264 1 11 HELIX 27 27 GLY B 279 ASN B 292 1 14 HELIX 28 28 SER B 306 ILE B 319 1 14 HELIX 29 29 PHE B 328 ASP B 330 5 3 HELIX 30 30 TYR B 331 CYS B 339 1 9 HELIX 31 31 HIS B 363 LEU B 370 1 8 SHEET 1 A 4 GLU A 46 ALA A 51 0 SHEET 2 A 4 ILE A 35 THR A 41 -1 N ILE A 39 O GLY A 47 SHEET 3 A 4 LEU A 11 THR A 19 -1 N SER A 12 O THR A 40 SHEET 4 A 4 SER A 371 GLU A 377 -1 O GLU A 377 N LEU A 14 SHEET 1 B 8 PHE A 296 ILE A 297 0 SHEET 2 B 8 ILE A 269 PHE A 270 1 N PHE A 270 O PHE A 296 SHEET 3 B 8 VAL A 246 THR A 248 1 O VAL A 246 N ILE A 269 SHEET 4 B 8 TRP A 222 GLU A 224 1 N ILE A 223 O VAL A 247 SHEET 5 B 8 LEU A 195 ASP A 198 1 N LEU A 197 O GLU A 224 SHEET 6 B 8 ILE A 166 ILE A 168 1 N ILE A 168 O ASP A 198 SHEET 7 B 8 ASN A 133 THR A 139 1 N ALA A 138 O LYS A 167 SHEET 8 B 8 ALA A 325 ILE A 327 1 O ALA A 325 N PRO A 135 SHEET 1 C 9 PHE A 296 ILE A 297 0 SHEET 2 C 9 ILE A 269 PHE A 270 1 N PHE A 270 O PHE A 296 SHEET 3 C 9 VAL A 246 THR A 248 1 O VAL A 246 N ILE A 269 SHEET 4 C 9 TRP A 222 GLU A 224 1 N ILE A 223 O VAL A 247 SHEET 5 C 9 LEU A 195 ASP A 198 1 N LEU A 197 O GLU A 224 SHEET 6 C 9 ILE A 166 ILE A 168 1 N ILE A 168 O ASP A 198 SHEET 7 C 9 ASN A 133 THR A 139 1 N ALA A 138 O LYS A 167 SHEET 8 C 9 LYS A 349 ILE A 352 -1 O ALA A 350 N VAL A 134 SHEET 9 C 9 PHE A 343 ILE A 346 -1 N ASP A 344 O HIS A 351 SHEET 1 D 4 GLU B 46 ALA B 51 0 SHEET 2 D 4 ILE B 35 THR B 41 -1 N ILE B 39 O GLY B 47 SHEET 3 D 4 LEU B 11 THR B 19 -1 N SER B 12 O THR B 40 SHEET 4 D 4 SER B 371 GLU B 377 -1 O ILE B 372 N ILE B 18 SHEET 1 E 8 PHE B 296 ILE B 297 0 SHEET 2 E 8 ILE B 269 PHE B 270 1 N PHE B 270 O PHE B 296 SHEET 3 E 8 VAL B 246 THR B 248 1 O VAL B 246 N ILE B 269 SHEET 4 E 8 TRP B 222 GLU B 224 1 N ILE B 223 O VAL B 247 SHEET 5 E 8 LEU B 195 ASP B 198 1 N LEU B 197 O GLU B 224 SHEET 6 E 8 ILE B 166 ILE B 168 1 N ILE B 168 O ASP B 198 SHEET 7 E 8 ASN B 133 THR B 139 1 N ALA B 138 O LYS B 167 SHEET 8 E 8 ALA B 325 ILE B 327 1 O ILE B 327 N THR B 139 SHEET 1 F 9 PHE B 296 ILE B 297 0 SHEET 2 F 9 ILE B 269 PHE B 270 1 N PHE B 270 O PHE B 296 SHEET 3 F 9 VAL B 246 THR B 248 1 O VAL B 246 N ILE B 269 SHEET 4 F 9 TRP B 222 GLU B 224 1 N ILE B 223 O VAL B 247 SHEET 5 F 9 LEU B 195 ASP B 198 1 N LEU B 197 O GLU B 224 SHEET 6 F 9 ILE B 166 ILE B 168 1 N ILE B 168 O ASP B 198 SHEET 7 F 9 ASN B 133 THR B 139 1 N ALA B 138 O LYS B 167 SHEET 8 F 9 LYS B 349 ILE B 352 -1 O ALA B 350 N VAL B 134 SHEET 9 F 9 PHE B 343 ILE B 346 -1 N ILE B 346 O LYS B 349 LINK OD2 ASP A 198 MG MG A 701 1555 1555 2.00 LINK OE2 GLU A 224 MG MG A 701 1555 1555 2.03 LINK OE1 GLU A 250 MG MG A 701 1555 1555 1.95 LINK MG MG A 701 O HOH A 956 1555 1555 2.01 LINK MG MG A 701 O HOH A 968 1555 1555 2.06 LINK MG MG A 701 O HOH A 971 1555 1555 2.14 LINK OD2 ASP B 198 MG MG B 702 1555 1555 1.99 LINK OE2 GLU B 224 MG MG B 702 1555 1555 2.10 LINK OE1 GLU B 250 MG MG B 702 1555 1555 1.95 LINK OD1 ASN B 265 MG MG B 703 1555 1555 1.78 LINK OD1 ASN B 265 MG MG B 703 3655 1555 1.83 LINK MG MG B 702 O HOH B 758 1555 1555 2.13 LINK MG MG B 702 O HOH B 981 1555 1555 2.05 LINK MG MG B 702 O HOH B 994 1555 1555 2.09 LINK MG MG B 703 O HOH B 745 1555 1555 2.06 LINK MG MG B 703 O HOH B 745 1555 3655 2.06 LINK MG MG B 703 O HOH B 765 1555 1555 2.22 LINK MG MG B 703 O HOH B 765 1555 3655 2.20 LINK MG MG B 703 O HOH B 801 1555 1555 3.12 LINK MG MG B 703 O HOH B 801 1555 3655 3.06 SITE 1 AC1 6 ASP A 198 GLU A 224 GLU A 250 HOH A 956 SITE 2 AC1 6 HOH A 968 HOH A 971 SITE 1 AC2 6 ASP B 198 GLU B 224 GLU B 250 HOH B 758 SITE 2 AC2 6 HOH B 981 HOH B 994 SITE 1 AC3 4 ASN B 265 HOH B 745 HOH B 765 HOH B 801 CRYST1 88.636 139.168 121.153 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008254 0.00000