HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-JUL-07 2QHQ TITLE CRYSTAL STRUCTURE OF UNKNOWN FUNCTION PROTEIN VPA0580 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNKNOWN FUNCTION PROTEIN VPA0580; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633; SOURCE 5 GENE: VPA0580; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG KEYWDS VIBRIO PARAHAEMOLYTICUS, UNKNOWN FUNCTION PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,Y.KIM,L.VOLKART,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-JUL-11 2QHQ 1 VERSN REVDAT 3 24-FEB-09 2QHQ 1 VERSN REVDAT 2 04-DEC-07 2QHQ 1 AUTHOR JRNL REVDAT 1 17-JUL-07 2QHQ 0 JRNL AUTH C.CHANG,Y.KIM,L.VOLKART,J.ABDULLAH,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF UNKNOWN FUNCTION PROTEIN VPA0580. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 16.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.041 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2024 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2747 ; 1.309 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 4.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;38.824 ;26.106 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 295 ;14.244 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;11.017 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 294 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1624 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 959 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1425 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 226 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1262 ; 0.877 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1966 ; 1.207 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 843 ; 2.339 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 772 ; 3.504 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0506 76.8245 9.2534 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0576 REMARK 3 T33: 0.0614 T12: -0.0104 REMARK 3 T13: 0.0096 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 8.4717 L22: 6.5682 REMARK 3 L33: 1.8703 L12: 7.4595 REMARK 3 L13: 3.9805 L23: 3.5049 REMARK 3 S TENSOR REMARK 3 S11: -0.1891 S12: 0.9843 S13: 0.1372 REMARK 3 S21: -0.2752 S22: 0.3705 S23: -0.0052 REMARK 3 S31: -0.2088 S32: 0.2825 S33: -0.1814 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5892 59.6766 10.1603 REMARK 3 T TENSOR REMARK 3 T11: -0.0246 T22: -0.0195 REMARK 3 T33: -0.0233 T12: -0.0031 REMARK 3 T13: 0.0083 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.5243 L22: 0.6018 REMARK 3 L33: 1.3141 L12: -0.0544 REMARK 3 L13: 0.2862 L23: 0.1465 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: 0.0311 S13: -0.0240 REMARK 3 S21: 0.0288 S22: -0.0053 S23: -0.0347 REMARK 3 S31: 0.0403 S32: 0.0083 S33: -0.0287 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 24 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2985 45.0495 31.3068 REMARK 3 T TENSOR REMARK 3 T11: -0.0242 T22: -0.0277 REMARK 3 T33: -0.0281 T12: -0.0310 REMARK 3 T13: 0.0144 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.3781 L22: 2.5328 REMARK 3 L33: 0.6643 L12: -2.4489 REMARK 3 L13: 0.1326 L23: 0.1123 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.1062 S13: -0.0127 REMARK 3 S21: -0.0329 S22: -0.0159 S23: 0.1526 REMARK 3 S31: 0.0519 S32: -0.0624 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9692 61.7499 33.9500 REMARK 3 T TENSOR REMARK 3 T11: -0.0171 T22: -0.0175 REMARK 3 T33: -0.0238 T12: 0.0002 REMARK 3 T13: -0.0059 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.9555 L22: 0.5331 REMARK 3 L33: 0.5698 L12: -0.2789 REMARK 3 L13: -0.3078 L23: 0.1809 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0281 S13: 0.0418 REMARK 3 S21: 0.0312 S22: -0.0033 S23: -0.0125 REMARK 3 S31: -0.0079 S32: -0.0457 S33: 0.0154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 14.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8 M SODIUM ACETATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.39800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.88700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.42550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.88700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.39800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.42550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 193 O HOH A 212 1.90 REMARK 500 O HOH A 159 O HOH A 161 2.04 REMARK 500 O HOH A 179 O HOH A 245 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 87 -67.77 -108.22 REMARK 500 GLU B 87 -65.41 -107.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 305 DISTANCE = 6.39 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC86649 RELATED DB: TARGETDB DBREF 2QHQ A 1 122 UNP Q87IM6 Q87IM6_VIBPA 1 122 DBREF 2QHQ B 1 122 UNP Q87IM6 Q87IM6_VIBPA 1 122 SEQADV 2QHQ SER A -2 UNP Q87IM6 CLONING ARTIFACT SEQADV 2QHQ ASN A -1 UNP Q87IM6 CLONING ARTIFACT SEQADV 2QHQ ALA A 0 UNP Q87IM6 CLONING ARTIFACT SEQADV 2QHQ MSE A 1 UNP Q87IM6 MET 1 MODIFIED RESIDUE SEQADV 2QHQ MSE A 7 UNP Q87IM6 MET 7 MODIFIED RESIDUE SEQADV 2QHQ MLY A 8 UNP Q87IM6 LYS 8 MODIFIED RESIDUE SEQADV 2QHQ MSE A 9 UNP Q87IM6 MET 9 MODIFIED RESIDUE SEQADV 2QHQ MLY A 24 UNP Q87IM6 LYS 24 MODIFIED RESIDUE SEQADV 2QHQ MSE A 31 UNP Q87IM6 MET 31 MODIFIED RESIDUE SEQADV 2QHQ MLY A 62 UNP Q87IM6 LYS 62 MODIFIED RESIDUE SEQADV 2QHQ MLY A 74 UNP Q87IM6 LYS 74 MODIFIED RESIDUE SEQADV 2QHQ MSE A 105 UNP Q87IM6 MET 105 MODIFIED RESIDUE SEQADV 2QHQ MLY A 122 UNP Q87IM6 LYS 122 MODIFIED RESIDUE SEQADV 2QHQ SER B -2 UNP Q87IM6 CLONING ARTIFACT SEQADV 2QHQ ASN B -1 UNP Q87IM6 CLONING ARTIFACT SEQADV 2QHQ ALA B 0 UNP Q87IM6 CLONING ARTIFACT SEQADV 2QHQ MSE B 1 UNP Q87IM6 MET 1 MODIFIED RESIDUE SEQADV 2QHQ MSE B 7 UNP Q87IM6 MET 7 MODIFIED RESIDUE SEQADV 2QHQ MLY B 8 UNP Q87IM6 LYS 8 MODIFIED RESIDUE SEQADV 2QHQ MSE B 9 UNP Q87IM6 MET 9 MODIFIED RESIDUE SEQADV 2QHQ MLY B 24 UNP Q87IM6 LYS 24 MODIFIED RESIDUE SEQADV 2QHQ MSE B 31 UNP Q87IM6 MET 31 MODIFIED RESIDUE SEQADV 2QHQ MLY B 62 UNP Q87IM6 LYS 62 MODIFIED RESIDUE SEQADV 2QHQ MLY B 74 UNP Q87IM6 LYS 74 MODIFIED RESIDUE SEQADV 2QHQ MSE B 105 UNP Q87IM6 MET 105 MODIFIED RESIDUE SEQADV 2QHQ MLY B 122 UNP Q87IM6 LYS 122 MODIFIED RESIDUE SEQRES 1 A 125 SER ASN ALA MSE ALA LEU GLY PHE GLY MSE MLY MSE GLU SEQRES 2 A 125 LEU GLN GLN PHE LEU ASP ALA LEU ALA SER SER PRO GLU SEQRES 3 A 125 MLY ILE GLU PHE GLU THR THR MSE ALA VAL ILE GLU ASP SEQRES 4 A 125 ASN TYR ASP PHE THR PRO ALA ALA PHE THR ASN GLY ASN SEQRES 5 A 125 THR GLN ASN ASP ALA ASN GLU ASN ASN GLY SER CYS MLY SEQRES 6 A 125 ILE PHE ALA PHE GLY LEU LEU ASN ALA LEU ASP MLY GLU SEQRES 7 A 125 ALA THR LEU ALA CYS PHE GLY ARG PHE TYR ARG GLU ASP SEQRES 8 A 125 VAL LEU LEU HIS PRO GLU ASN ASN ASP HIS GLN ASN ILE SEQRES 9 A 125 ARG ASN PHE MSE VAL THR GLY TRP GLU GLY ILE GLN PHE SEQRES 10 A 125 GLU THR SER ALA LEU THR ALA MLY SEQRES 1 B 125 SER ASN ALA MSE ALA LEU GLY PHE GLY MSE MLY MSE GLU SEQRES 2 B 125 LEU GLN GLN PHE LEU ASP ALA LEU ALA SER SER PRO GLU SEQRES 3 B 125 MLY ILE GLU PHE GLU THR THR MSE ALA VAL ILE GLU ASP SEQRES 4 B 125 ASN TYR ASP PHE THR PRO ALA ALA PHE THR ASN GLY ASN SEQRES 5 B 125 THR GLN ASN ASP ALA ASN GLU ASN ASN GLY SER CYS MLY SEQRES 6 B 125 ILE PHE ALA PHE GLY LEU LEU ASN ALA LEU ASP MLY GLU SEQRES 7 B 125 ALA THR LEU ALA CYS PHE GLY ARG PHE TYR ARG GLU ASP SEQRES 8 B 125 VAL LEU LEU HIS PRO GLU ASN ASN ASP HIS GLN ASN ILE SEQRES 9 B 125 ARG ASN PHE MSE VAL THR GLY TRP GLU GLY ILE GLN PHE SEQRES 10 B 125 GLU THR SER ALA LEU THR ALA MLY MODRES 2QHQ MSE A 7 MET SELENOMETHIONINE MODRES 2QHQ MLY A 8 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MSE A 9 MET SELENOMETHIONINE MODRES 2QHQ MLY A 24 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MSE A 31 MET SELENOMETHIONINE MODRES 2QHQ MLY A 62 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MLY A 74 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MSE A 105 MET SELENOMETHIONINE MODRES 2QHQ MLY A 122 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MSE B 1 MET SELENOMETHIONINE MODRES 2QHQ MSE B 7 MET SELENOMETHIONINE MODRES 2QHQ MLY B 8 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MSE B 9 MET SELENOMETHIONINE MODRES 2QHQ MLY B 24 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MSE B 31 MET SELENOMETHIONINE MODRES 2QHQ MLY B 62 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MLY B 74 LYS N-DIMETHYL-LYSINE MODRES 2QHQ MSE B 105 MET SELENOMETHIONINE MODRES 2QHQ MLY B 122 LYS N-DIMETHYL-LYSINE HET MSE A 7 13 HET MLY A 8 11 HET MSE A 9 8 HET MLY A 24 11 HET MSE A 31 8 HET MLY A 62 11 HET MLY A 74 11 HET MSE A 105 8 HET MLY A 122 12 HET MSE B 1 8 HET MSE B 7 8 HET MLY B 8 11 HET MSE B 9 8 HET MLY B 24 11 HET MSE B 31 8 HET MLY B 62 11 HET MLY B 74 11 HET MSE B 105 8 HET MLY B 122 12 HET ACT B 201 4 HETNAM MSE SELENOMETHIONINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM ACT ACETATE ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 1 MLY 10(C8 H18 N2 O2) FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *276(H2 O) HELIX 1 1 GLU A 10 SER A 21 1 12 HELIX 2 2 PRO A 22 ILE A 25 5 4 HELIX 3 3 GLU A 26 ASN A 37 1 12 HELIX 4 4 ASN A 57 ASN A 70 1 14 HELIX 5 5 ASP A 73 PHE A 81 1 9 HELIX 6 6 GLY A 82 GLU A 87 1 6 HELIX 7 7 HIS A 98 GLY A 108 1 11 HELIX 8 8 GLU B 10 SER B 21 1 12 HELIX 9 9 PRO B 22 ILE B 25 5 4 HELIX 10 10 GLU B 26 ASN B 37 1 12 HELIX 11 11 ASN B 57 ASN B 70 1 14 HELIX 12 12 ASP B 73 PHE B 81 1 9 HELIX 13 13 GLY B 82 GLU B 87 1 6 HELIX 14 14 HIS B 98 GLY B 108 1 11 SHEET 1 A 2 TYR A 38 PHE A 40 0 SHEET 2 A 2 LEU A 119 ALA A 121 -1 O THR A 120 N ASP A 39 SHEET 1 B 3 THR A 50 ASN A 52 0 SHEET 2 B 3 PHE A 45 ASN A 47 -1 N ASN A 47 O THR A 50 SHEET 3 B 3 ILE A 112 PHE A 114 -1 O GLN A 113 N THR A 46 SHEET 1 C 2 TYR B 38 PHE B 40 0 SHEET 2 C 2 LEU B 119 ALA B 121 -1 O THR B 120 N ASP B 39 SHEET 1 D 3 THR B 50 ASN B 52 0 SHEET 2 D 3 PHE B 45 ASN B 47 -1 N ASN B 47 O THR B 50 SHEET 3 D 3 ILE B 112 PHE B 114 -1 O GLN B 113 N THR B 46 LINK C GLY A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N MLY A 8 1555 1555 1.32 LINK C MLY A 8 N MSE A 9 1555 1555 1.33 LINK C MSE A 9 N GLU A 10 1555 1555 1.33 LINK C GLU A 23 N MLY A 24 1555 1555 1.33 LINK C MLY A 24 N ILE A 25 1555 1555 1.33 LINK C THR A 30 N MSE A 31 1555 1555 1.34 LINK C MSE A 31 N ALA A 32 1555 1555 1.33 LINK C CYS A 61 N MLY A 62 1555 1555 1.34 LINK C MLY A 62 N ILE A 63 1555 1555 1.33 LINK C ASP A 73 N MLY A 74 1555 1555 1.33 LINK C MLY A 74 N GLU A 75 1555 1555 1.33 LINK C PHE A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N VAL A 106 1555 1555 1.33 LINK C ALA A 121 N MLY A 122 1555 1555 1.28 LINK C MSE B 1 N ALA B 2 1555 1555 1.33 LINK C GLY B 6 N MSE B 7 1555 1555 1.34 LINK C MSE B 7 N MLY B 8 1555 1555 1.33 LINK C MLY B 8 N MSE B 9 1555 1555 1.34 LINK C MSE B 9 N GLU B 10 1555 1555 1.33 LINK C GLU B 23 N MLY B 24 1555 1555 1.34 LINK C MLY B 24 N ILE B 25 1555 1555 1.33 LINK C THR B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N ALA B 32 1555 1555 1.33 LINK C CYS B 61 N MLY B 62 1555 1555 1.34 LINK C MLY B 62 N ILE B 63 1555 1555 1.33 LINK C ASP B 73 N MLY B 74 1555 1555 1.33 LINK C MLY B 74 N GLU B 75 1555 1555 1.34 LINK C PHE B 104 N MSE B 105 1555 1555 1.34 LINK C MSE B 105 N VAL B 106 1555 1555 1.33 LINK C ALA B 121 N MLY B 122 1555 1555 1.28 SITE 1 AC1 4 PHE B 84 HIS B 92 HIS B 98 HOH B 254 CRYST1 34.796 80.851 87.774 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011393 0.00000