data_2QHU # _entry.id 2QHU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QHU RCSB RCSB043617 WWPDB D_1000043617 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2QHS . unspecified PDB 2QHT . unspecified PDB 2QHV . unspecified # _pdbx_database_status.entry_id 2QHU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-07-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kim, D.J.' 1 ? 'Lee, S.J.' 2 ? 'Kim, H.S.' 3 ? 'Kim, K.H.' 4 ? 'Lee, H.H.' 5 ? 'Yoon, H.J.' 6 ? 'Suh, S.W.' 7 ? # _citation.id primary _citation.title 'Structural basis of octanoic acid recognition by lipoate-protein ligase B' _citation.journal_abbrev Proteins _citation.journal_volume 70 _citation.page_first 1620 _citation.page_last 1625 _citation.year 2008 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18076036 _citation.pdbx_database_id_DOI 10.1002/prot.21843 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, D.J.' 1 primary 'Lee, S.J.' 2 primary 'Kim, H.S.' 3 primary 'Kim, K.H.' 4 primary 'Lee, H.H.' 5 primary 'Yoon, H.J.' 6 primary 'Suh, S.W.' 7 # _cell.length_a 63.762 _cell.length_b 63.762 _cell.length_c 114.049 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2QHU _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 2QHU _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Lipoyltransferase 23241.781 1 2.3.1.- ? ? ? 2 non-polymer syn OCTANAL 128.212 1 ? ? ? ? 3 water nat water 18.015 194 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'LipB, Lipoyl-[acyl-carrier-protein]-protein- N-lipoyltransferase, Lipoate-protein ligase B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDVT YHGPGQLVGYPIFPVGREVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTD LNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPV ; _entity_poly.pdbx_seq_one_letter_code_can ;MEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDVT YHGPGQLVGYPIFPVGREVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTD LNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 PHE n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 ASP n 1 8 LEU n 1 9 GLY n 1 10 LEU n 1 11 VAL n 1 12 PRO n 1 13 TYR n 1 14 GLY n 1 15 GLU n 1 16 ALA n 1 17 TRP n 1 18 ALA n 1 19 TYR n 1 20 GLN n 1 21 LYS n 1 22 ARG n 1 23 VAL n 1 24 HIS n 1 25 ARG n 1 26 GLU n 1 27 VAL n 1 28 VAL n 1 29 ALA n 1 30 GLY n 1 31 ASN n 1 32 ARG n 1 33 PRO n 1 34 PRO n 1 35 THR n 1 36 LEU n 1 37 LEU n 1 38 LEU n 1 39 LEU n 1 40 GLU n 1 41 HIS n 1 42 PRO n 1 43 ARG n 1 44 VAL n 1 45 ILE n 1 46 THR n 1 47 LEU n 1 48 GLY n 1 49 ARG n 1 50 LYS n 1 51 ALA n 1 52 THR n 1 53 GLY n 1 54 GLU n 1 55 ASN n 1 56 LEU n 1 57 LEU n 1 58 PHE n 1 59 PRO n 1 60 GLU n 1 61 SER n 1 62 TRP n 1 63 TYR n 1 64 ARG n 1 65 GLU n 1 66 ASN n 1 67 GLY n 1 68 PHE n 1 69 GLU n 1 70 LEU n 1 71 TYR n 1 72 TRP n 1 73 VAL n 1 74 GLU n 1 75 ARG n 1 76 GLY n 1 77 GLY n 1 78 ASP n 1 79 VAL n 1 80 THR n 1 81 TYR n 1 82 HIS n 1 83 GLY n 1 84 PRO n 1 85 GLY n 1 86 GLN n 1 87 LEU n 1 88 VAL n 1 89 GLY n 1 90 TYR n 1 91 PRO n 1 92 ILE n 1 93 PHE n 1 94 PRO n 1 95 VAL n 1 96 GLY n 1 97 ARG n 1 98 GLU n 1 99 VAL n 1 100 ARG n 1 101 ARG n 1 102 PHE n 1 103 LEU n 1 104 ARG n 1 105 GLN n 1 106 ILE n 1 107 GLU n 1 108 GLU n 1 109 ALA n 1 110 ILE n 1 111 VAL n 1 112 ARG n 1 113 VAL n 1 114 ALA n 1 115 ALA n 1 116 GLY n 1 117 TYR n 1 118 GLY n 1 119 ILE n 1 120 SER n 1 121 ALA n 1 122 TYR n 1 123 PRO n 1 124 THR n 1 125 PRO n 1 126 GLY n 1 127 TYR n 1 128 ALA n 1 129 GLY n 1 130 VAL n 1 131 TRP n 1 132 VAL n 1 133 GLY n 1 134 GLU n 1 135 ASP n 1 136 LYS n 1 137 LEU n 1 138 CYS n 1 139 ALA n 1 140 ILE n 1 141 GLY n 1 142 VAL n 1 143 ALA n 1 144 VAL n 1 145 LYS n 1 146 GLU n 1 147 GLY n 1 148 VAL n 1 149 SER n 1 150 PHE n 1 151 HIS n 1 152 GLY n 1 153 PHE n 1 154 ALA n 1 155 LEU n 1 156 ASN n 1 157 VAL n 1 158 ASN n 1 159 THR n 1 160 ASP n 1 161 LEU n 1 162 ASN n 1 163 ASP n 1 164 PHE n 1 165 THR n 1 166 VAL n 1 167 ILE n 1 168 VAL n 1 169 PRO n 1 170 CYS n 1 171 GLY n 1 172 LEU n 1 173 LYS n 1 174 GLY n 1 175 LYS n 1 176 GLY n 1 177 VAL n 1 178 THR n 1 179 SER n 1 180 LEU n 1 181 GLU n 1 182 LYS n 1 183 LEU n 1 184 LEU n 1 185 GLY n 1 186 ARG n 1 187 LYS n 1 188 VAL n 1 189 PRO n 1 190 MET n 1 191 GLU n 1 192 GLU n 1 193 ALA n 1 194 LYS n 1 195 ALA n 1 196 ARG n 1 197 VAL n 1 198 VAL n 1 199 ALA n 1 200 ALA n 1 201 PHE n 1 202 ALA n 1 203 GLU n 1 204 VAL n 1 205 PHE n 1 206 GLY n 1 207 LEU n 1 208 ARG n 1 209 PRO n 1 210 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene 'TTC 1746' _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2 (DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LIPB_THET8 _struct_ref.pdbx_db_accession Q5SLQ3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDVT YHGPGQLVGYPIFPVGREVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTD LNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHEA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QHU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 210 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SLQ3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 210 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 210 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OYA non-polymer . OCTANAL 'OCTYL ALDEHYDE' 'C8 H16 O' 128.212 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2QHU _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '50mM HEPES at pH 7.0, 4.0M lithium chloride, 5%(v/v) PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97925 1.0 2 0.97942 1.0 3 0.95000 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97925, 0.97942, 0.95000' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A # _reflns.entry_id 2QHU _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 20.000 _reflns.number_all ? _reflns.number_obs 18458 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 2QHU _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 95.670 _refine.ls_number_reflns_obs 16494 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_R_work 0.20561 _refine.ls_R_factor_R_free 0.24075 _refine.ls_percent_reflns_R_free 10.300 _refine.ls_number_reflns_R_free 1887 _refine.B_iso_mean 22.892 _refine.aniso_B[1][1] 0.55 _refine.aniso_B[2][2] 0.55 _refine.aniso_B[3][3] -1.09 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.936 _refine.correlation_coeff_Fo_to_Fc_free 0.914 _refine.pdbx_overall_ESU_R 0.185 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.095 _refine.overall_SU_B 3.134 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1643 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 194 _refine_hist.number_atoms_total 1846 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1694 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.234 1.968 ? 2298 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.992 5.000 ? 209 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.253 22.400 ? 75 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.172 15.000 ? 266 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.918 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.082 0.200 ? 248 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1301 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.192 0.200 ? 758 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.307 0.200 ? 1141 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.146 0.200 ? 128 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.244 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.129 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.698 1.500 ? 1062 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.127 2.000 ? 1666 'X-RAY DIFFRACTION' ? r_scbond_it 1.769 3.000 ? 722 'X-RAY DIFFRACTION' ? r_scangle_it 2.977 4.500 ? 632 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.690 _refine_ls_shell.number_reflns_R_work 1178 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.195 _refine_ls_shell.R_factor_R_free 0.257 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 133 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1311 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QHU _struct.title 'Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B' _struct.pdbx_descriptor 'Lipoyltransferase (E.C.2.3.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QHU _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'globular protein, Transferase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? ALA A 29 ? PRO A 12 ALA A 29 1 ? 18 HELX_P HELX_P2 2 THR A 52 ? LEU A 56 ? THR A 52 LEU A 56 5 ? 5 HELX_P HELX_P3 3 PRO A 59 ? ASN A 66 ? PRO A 59 ASN A 66 1 ? 8 HELX_P HELX_P4 4 GLU A 98 ? TYR A 117 ? GLU A 98 TYR A 117 1 ? 20 HELX_P HELX_P5 5 ASP A 160 ? ILE A 167 ? ASP A 160 ILE A 167 5 ? 8 HELX_P HELX_P6 6 SER A 179 ? GLY A 185 ? SER A 179 GLY A 185 1 ? 7 HELX_P HELX_P7 7 PRO A 189 ? GLY A 206 ? PRO A 189 GLY A 206 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 170 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 170 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 170 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 170 _struct_conn.ptnr2_symmetry 8_554 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.986 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 7 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? parallel C 1 2 ? parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 130 ? VAL A 132 ? VAL A 130 VAL A 132 A 2 ASP A 135 ? LYS A 145 ? ASP A 135 LYS A 145 A 3 GLY A 176 ? VAL A 177 ? GLY A 176 VAL A 177 B 1 VAL A 130 ? VAL A 132 ? VAL A 130 VAL A 132 B 2 ASP A 135 ? LYS A 145 ? ASP A 135 LYS A 145 B 3 VAL A 148 ? ASN A 156 ? VAL A 148 ASN A 156 B 4 GLN A 86 ? ILE A 92 ? GLN A 86 ILE A 92 B 5 THR A 35 ? GLU A 40 ? THR A 35 GLU A 40 B 6 GLU A 2 ? LEU A 10 ? GLU A 2 LEU A 10 B 7 ARG A 208 ? VAL A 210 ? ARG A 208 VAL A 210 C 1 GLU A 69 ? TRP A 72 ? GLU A 69 TRP A 72 C 2 VAL A 44 ? LEU A 47 ? VAL A 44 LEU A 47 C 3 VAL A 79 ? HIS A 82 ? VAL A 79 HIS A 82 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 130 ? N VAL A 130 O CYS A 138 ? O CYS A 138 A 2 3 N LYS A 136 ? N LYS A 136 O GLY A 176 ? O GLY A 176 B 1 2 N VAL A 130 ? N VAL A 130 O CYS A 138 ? O CYS A 138 B 2 3 N GLY A 141 ? N GLY A 141 O GLY A 152 ? O GLY A 152 B 3 4 O LEU A 155 ? O LEU A 155 N LEU A 87 ? N LEU A 87 B 4 5 O ILE A 92 ? O ILE A 92 N THR A 35 ? N THR A 35 B 5 6 O LEU A 36 ? O LEU A 36 N LEU A 4 ? N LEU A 4 B 6 7 N PHE A 3 ? N PHE A 3 O VAL A 210 ? O VAL A 210 C 1 2 O TYR A 71 ? O TYR A 71 N LEU A 47 ? N LEU A 47 C 2 3 N VAL A 44 ? N VAL A 44 O HIS A 82 ? O HIS A 82 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE OYA A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ARG A 75 ? ARG A 75 . ? 1_555 ? 2 AC1 8 GLY A 77 ? GLY A 77 . ? 1_555 ? 3 AC1 8 ASP A 78 ? ASP A 78 . ? 1_555 ? 4 AC1 8 ALA A 139 ? ALA A 139 . ? 1_555 ? 5 AC1 8 ILE A 140 ? ILE A 140 . ? 1_555 ? 6 AC1 8 GLY A 141 ? GLY A 141 . ? 1_555 ? 7 AC1 8 GLY A 152 ? GLY A 152 . ? 1_555 ? 8 AC1 8 PHE A 153 ? PHE A 153 . ? 1_555 ? # _atom_sites.entry_id 2QHU _atom_sites.fract_transf_matrix[1][1] 0.015683 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015683 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008768 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 HIS 82 82 82 HIS HIS A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 TRP 131 131 131 TRP TRP A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 CYS 138 138 138 CYS CYS A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 HIS 151 151 151 HIS HIS A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 ASN 158 158 158 ASN ASN A . n A 1 159 THR 159 159 159 THR THR A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 CYS 170 170 170 CYS CYS A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 SER 179 179 179 SER SER A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 PRO 189 189 189 PRO PRO A . n A 1 190 MET 190 190 190 MET MET A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 VAL 197 197 197 VAL VAL A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 ALA 199 199 199 ALA ALA A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 PHE 201 201 201 PHE PHE A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 GLU 203 203 203 GLU GLU A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 PHE 205 205 205 PHE PHE A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 LEU 207 207 207 LEU LEU A . n A 1 208 ARG 208 208 208 ARG ARG A . n A 1 209 PRO 209 209 209 PRO PRO A . n A 1 210 VAL 210 210 210 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OYA 1 1001 1 OYA DRG A . C 3 HOH 1 1002 1 HOH HOH A . C 3 HOH 2 1003 2 HOH HOH A . C 3 HOH 3 1004 3 HOH HOH A . C 3 HOH 4 1005 4 HOH HOH A . C 3 HOH 5 1006 5 HOH HOH A . C 3 HOH 6 1007 6 HOH HOH A . C 3 HOH 7 1008 7 HOH HOH A . C 3 HOH 8 1009 8 HOH HOH A . C 3 HOH 9 1010 9 HOH HOH A . C 3 HOH 10 1011 10 HOH HOH A . C 3 HOH 11 1012 11 HOH HOH A . C 3 HOH 12 1013 12 HOH HOH A . C 3 HOH 13 1014 13 HOH HOH A . C 3 HOH 14 1015 14 HOH HOH A . C 3 HOH 15 1016 15 HOH HOH A . C 3 HOH 16 1017 16 HOH HOH A . C 3 HOH 17 1018 17 HOH HOH A . C 3 HOH 18 1019 18 HOH HOH A . C 3 HOH 19 1020 19 HOH HOH A . C 3 HOH 20 1021 20 HOH HOH A . C 3 HOH 21 1022 21 HOH HOH A . C 3 HOH 22 1023 22 HOH HOH A . C 3 HOH 23 1024 23 HOH HOH A . C 3 HOH 24 1025 24 HOH HOH A . C 3 HOH 25 1026 25 HOH HOH A . C 3 HOH 26 1027 26 HOH HOH A . C 3 HOH 27 1028 27 HOH HOH A . C 3 HOH 28 1029 28 HOH HOH A . C 3 HOH 29 1030 29 HOH HOH A . C 3 HOH 30 1031 30 HOH HOH A . C 3 HOH 31 1032 31 HOH HOH A . C 3 HOH 32 1033 32 HOH HOH A . C 3 HOH 33 1034 33 HOH HOH A . C 3 HOH 34 1035 34 HOH HOH A . C 3 HOH 35 1036 35 HOH HOH A . C 3 HOH 36 1037 36 HOH HOH A . C 3 HOH 37 1038 37 HOH HOH A . C 3 HOH 38 1039 38 HOH HOH A . C 3 HOH 39 1040 39 HOH HOH A . C 3 HOH 40 1041 40 HOH HOH A . C 3 HOH 41 1042 41 HOH HOH A . C 3 HOH 42 1043 42 HOH HOH A . C 3 HOH 43 1044 43 HOH HOH A . C 3 HOH 44 1045 44 HOH HOH A . C 3 HOH 45 1046 45 HOH HOH A . C 3 HOH 46 1047 46 HOH HOH A . C 3 HOH 47 1048 47 HOH HOH A . C 3 HOH 48 1049 48 HOH HOH A . C 3 HOH 49 1050 49 HOH HOH A . C 3 HOH 50 1051 50 HOH HOH A . C 3 HOH 51 1052 51 HOH HOH A . C 3 HOH 52 1053 52 HOH HOH A . C 3 HOH 53 1054 53 HOH HOH A . C 3 HOH 54 1055 54 HOH HOH A . C 3 HOH 55 1056 55 HOH HOH A . C 3 HOH 56 1057 56 HOH HOH A . C 3 HOH 57 1058 57 HOH HOH A . C 3 HOH 58 1059 58 HOH HOH A . C 3 HOH 59 1060 59 HOH HOH A . C 3 HOH 60 1061 60 HOH HOH A . C 3 HOH 61 1062 61 HOH HOH A . C 3 HOH 62 1063 62 HOH HOH A . C 3 HOH 63 1064 63 HOH HOH A . C 3 HOH 64 1065 64 HOH HOH A . C 3 HOH 65 1066 65 HOH HOH A . C 3 HOH 66 1067 66 HOH HOH A . C 3 HOH 67 1068 67 HOH HOH A . C 3 HOH 68 1069 68 HOH HOH A . C 3 HOH 69 1070 69 HOH HOH A . C 3 HOH 70 1071 70 HOH HOH A . C 3 HOH 71 1072 71 HOH HOH A . C 3 HOH 72 1073 72 HOH HOH A . C 3 HOH 73 1074 73 HOH HOH A . C 3 HOH 74 1075 74 HOH HOH A . C 3 HOH 75 1076 75 HOH HOH A . C 3 HOH 76 1077 76 HOH HOH A . C 3 HOH 77 1078 77 HOH HOH A . C 3 HOH 78 1079 78 HOH HOH A . C 3 HOH 79 1080 79 HOH HOH A . C 3 HOH 80 1081 80 HOH HOH A . C 3 HOH 81 1082 81 HOH HOH A . C 3 HOH 82 1083 82 HOH HOH A . C 3 HOH 83 1084 83 HOH HOH A . C 3 HOH 84 1085 84 HOH HOH A . C 3 HOH 85 1086 85 HOH HOH A . C 3 HOH 86 1087 86 HOH HOH A . C 3 HOH 87 1088 87 HOH HOH A . C 3 HOH 88 1089 88 HOH HOH A . C 3 HOH 89 1090 89 HOH HOH A . C 3 HOH 90 1091 90 HOH HOH A . C 3 HOH 91 1092 91 HOH HOH A . C 3 HOH 92 1093 92 HOH HOH A . C 3 HOH 93 1094 93 HOH HOH A . C 3 HOH 94 1095 94 HOH HOH A . C 3 HOH 95 1096 95 HOH HOH A . C 3 HOH 96 1097 96 HOH HOH A . C 3 HOH 97 1098 97 HOH HOH A . C 3 HOH 98 1099 98 HOH HOH A . C 3 HOH 99 1100 99 HOH HOH A . C 3 HOH 100 1101 100 HOH HOH A . C 3 HOH 101 1102 101 HOH HOH A . C 3 HOH 102 1103 102 HOH HOH A . C 3 HOH 103 1104 103 HOH HOH A . C 3 HOH 104 1105 104 HOH HOH A . C 3 HOH 105 1106 105 HOH HOH A . C 3 HOH 106 1107 106 HOH HOH A . C 3 HOH 107 1108 107 HOH HOH A . C 3 HOH 108 1109 108 HOH HOH A . C 3 HOH 109 1110 109 HOH HOH A . C 3 HOH 110 1111 110 HOH HOH A . C 3 HOH 111 1112 111 HOH HOH A . C 3 HOH 112 1113 112 HOH HOH A . C 3 HOH 113 1114 113 HOH HOH A . C 3 HOH 114 1115 114 HOH HOH A . C 3 HOH 115 1116 115 HOH HOH A . C 3 HOH 116 1117 116 HOH HOH A . C 3 HOH 117 1118 117 HOH HOH A . C 3 HOH 118 1119 118 HOH HOH A . C 3 HOH 119 1120 119 HOH HOH A . C 3 HOH 120 1121 120 HOH HOH A . C 3 HOH 121 1122 121 HOH HOH A . C 3 HOH 122 1123 122 HOH HOH A . C 3 HOH 123 1124 123 HOH HOH A . C 3 HOH 124 1125 124 HOH HOH A . C 3 HOH 125 1126 125 HOH HOH A . C 3 HOH 126 1127 126 HOH HOH A . C 3 HOH 127 1128 127 HOH HOH A . C 3 HOH 128 1129 128 HOH HOH A . C 3 HOH 129 1130 129 HOH HOH A . C 3 HOH 130 1131 130 HOH HOH A . C 3 HOH 131 1132 131 HOH HOH A . C 3 HOH 132 1133 132 HOH HOH A . C 3 HOH 133 1134 133 HOH HOH A . C 3 HOH 134 1135 134 HOH HOH A . C 3 HOH 135 1136 135 HOH HOH A . C 3 HOH 136 1137 136 HOH HOH A . C 3 HOH 137 1138 137 HOH HOH A . C 3 HOH 138 1139 138 HOH HOH A . C 3 HOH 139 1140 139 HOH HOH A . C 3 HOH 140 1141 140 HOH HOH A . C 3 HOH 141 1142 141 HOH HOH A . C 3 HOH 142 1143 142 HOH HOH A . C 3 HOH 143 1144 143 HOH HOH A . C 3 HOH 144 1145 144 HOH HOH A . C 3 HOH 145 1146 145 HOH HOH A . C 3 HOH 146 1147 146 HOH HOH A . C 3 HOH 147 1148 147 HOH HOH A . C 3 HOH 148 1149 148 HOH HOH A . C 3 HOH 149 1150 149 HOH HOH A . C 3 HOH 150 1151 150 HOH HOH A . C 3 HOH 151 1152 151 HOH HOH A . C 3 HOH 152 1153 152 HOH HOH A . C 3 HOH 153 1154 153 HOH HOH A . C 3 HOH 154 1155 154 HOH HOH A . C 3 HOH 155 1156 155 HOH HOH A . C 3 HOH 156 1157 156 HOH HOH A . C 3 HOH 157 1158 157 HOH HOH A . C 3 HOH 158 1159 158 HOH HOH A . C 3 HOH 159 1160 159 HOH HOH A . C 3 HOH 160 1161 160 HOH HOH A . C 3 HOH 161 1162 161 HOH HOH A . C 3 HOH 162 1163 162 HOH HOH A . C 3 HOH 163 1164 163 HOH HOH A . C 3 HOH 164 1165 164 HOH HOH A . C 3 HOH 165 1166 165 HOH HOH A . C 3 HOH 166 1167 166 HOH HOH A . C 3 HOH 167 1168 167 HOH HOH A . C 3 HOH 168 1169 168 HOH HOH A . C 3 HOH 169 1170 169 HOH HOH A . C 3 HOH 170 1171 170 HOH HOH A . C 3 HOH 171 1172 171 HOH HOH A . C 3 HOH 172 1173 172 HOH HOH A . C 3 HOH 173 1174 173 HOH HOH A . C 3 HOH 174 1175 174 HOH HOH A . C 3 HOH 175 1176 175 HOH HOH A . C 3 HOH 176 1177 176 HOH HOH A . C 3 HOH 177 1178 177 HOH HOH A . C 3 HOH 178 1179 178 HOH HOH A . C 3 HOH 179 1180 179 HOH HOH A . C 3 HOH 180 1181 180 HOH HOH A . C 3 HOH 181 1182 181 HOH HOH A . C 3 HOH 182 1183 182 HOH HOH A . C 3 HOH 183 1184 183 HOH HOH A . C 3 HOH 184 1185 184 HOH HOH A . C 3 HOH 185 1186 185 HOH HOH A . C 3 HOH 186 1187 186 HOH HOH A . C 3 HOH 187 1188 187 HOH HOH A . C 3 HOH 188 1189 188 HOH HOH A . C 3 HOH 189 1190 189 HOH HOH A . C 3 HOH 190 1191 190 HOH HOH A . C 3 HOH 191 1192 191 HOH HOH A . C 3 HOH 192 1193 192 HOH HOH A . C 3 HOH 193 1194 193 HOH HOH A . C 3 HOH 194 1195 194 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1023 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 SOLVE . ? ? ? ? phasing ? ? ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 78 ? ? -103.10 -103.46 2 1 THR A 124 ? ? 72.49 142.35 3 1 HIS A 151 ? ? 50.85 -153.62 4 1 VAL A 157 ? ? -100.95 -71.90 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 OCTANAL OYA 3 water HOH #