data_2QIP # _entry.id 2QIP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QIP RCSB RCSB043647 WWPDB D_1000043647 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC85975 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QIP _pdbx_database_status.recvd_initial_deposition_date 2007-07-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Duggan, E.' 2 'Moy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of a protein of unknown function, VPA0982 from Vibrio parahaemolyticus RIMD 2210633.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Duggan, E.' 2 primary 'Moy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2QIP _cell.length_a 62.207 _cell.length_b 75.034 _cell.length_c 80.418 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QIP _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein of unknown function VPA0982' 18988.053 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 6 ? ? ? ? 3 water nat water 18.015 178 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)QSDHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFE V(MSE)LKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDC ADNFVAIDDDFLL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMQSDHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLK PYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAID DDFLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC85975 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 GLN n 1 6 SER n 1 7 ASP n 1 8 HIS n 1 9 LYS n 1 10 GLU n 1 11 LYS n 1 12 ILE n 1 13 ALA n 1 14 ILE n 1 15 LEU n 1 16 VAL n 1 17 ASP n 1 18 VAL n 1 19 GLN n 1 20 ASN n 1 21 VAL n 1 22 TYR n 1 23 TYR n 1 24 THR n 1 25 CYS n 1 26 ARG n 1 27 GLU n 1 28 ALA n 1 29 TYR n 1 30 ARG n 1 31 SER n 1 32 ASN n 1 33 PHE n 1 34 ASP n 1 35 TYR n 1 36 ASN n 1 37 GLN n 1 38 PHE n 1 39 TRP n 1 40 TYR n 1 41 VAL n 1 42 ALA n 1 43 THR n 1 44 GLN n 1 45 GLU n 1 46 LYS n 1 47 GLU n 1 48 VAL n 1 49 VAL n 1 50 SER n 1 51 ALA n 1 52 LYS n 1 53 ALA n 1 54 TYR n 1 55 ALA n 1 56 ILE n 1 57 ALA n 1 58 SER n 1 59 ASN n 1 60 ASP n 1 61 PRO n 1 62 LYS n 1 63 GLN n 1 64 ARG n 1 65 GLN n 1 66 PHE n 1 67 HIS n 1 68 HIS n 1 69 ILE n 1 70 LEU n 1 71 ARG n 1 72 GLY n 1 73 VAL n 1 74 GLY n 1 75 PHE n 1 76 GLU n 1 77 VAL n 1 78 MSE n 1 79 LEU n 1 80 LYS n 1 81 PRO n 1 82 TYR n 1 83 ILE n 1 84 GLN n 1 85 ARG n 1 86 ARG n 1 87 ASP n 1 88 GLY n 1 89 SER n 1 90 ALA n 1 91 LYS n 1 92 GLY n 1 93 ASP n 1 94 TRP n 1 95 ASP n 1 96 VAL n 1 97 GLY n 1 98 ILE n 1 99 THR n 1 100 LEU n 1 101 ASP n 1 102 ALA n 1 103 ILE n 1 104 GLU n 1 105 ILE n 1 106 ALA n 1 107 PRO n 1 108 ASP n 1 109 VAL n 1 110 ASP n 1 111 ARG n 1 112 VAL n 1 113 ILE n 1 114 LEU n 1 115 VAL n 1 116 SER n 1 117 GLY n 1 118 ASP n 1 119 GLY n 1 120 ASP n 1 121 PHE n 1 122 SER n 1 123 LEU n 1 124 LEU n 1 125 VAL n 1 126 GLU n 1 127 ARG n 1 128 ILE n 1 129 GLN n 1 130 GLN n 1 131 ARG n 1 132 TYR n 1 133 ASN n 1 134 LYS n 1 135 LYS n 1 136 VAL n 1 137 THR n 1 138 VAL n 1 139 TYR n 1 140 GLY n 1 141 VAL n 1 142 PRO n 1 143 ARG n 1 144 LEU n 1 145 THR n 1 146 SER n 1 147 GLN n 1 148 THR n 1 149 LEU n 1 150 ILE n 1 151 ASP n 1 152 CYS n 1 153 ALA n 1 154 ASP n 1 155 ASN n 1 156 PHE n 1 157 VAL n 1 158 ALA n 1 159 ILE n 1 160 ASP n 1 161 ASP n 1 162 ASP n 1 163 PHE n 1 164 LEU n 1 165 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Vibrio _entity_src_gen.pdbx_gene_src_gene VPA0982 _entity_src_gen.gene_src_species 'Vibrio parahaemolyticus' _entity_src_gen.gene_src_strain 'RIMD 2210633' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio parahaemolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223926 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9AF14_VIBPA _struct_ref.pdbx_db_accession Q9AF14 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQSDHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYI QRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF LL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QIP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 165 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9AF14 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QIP SER A 1 ? UNP Q9AF14 ? ? 'CLONING ARTIFACT' -2 1 1 2QIP ASN A 2 ? UNP Q9AF14 ? ? 'CLONING ARTIFACT' -1 2 1 2QIP ALA A 3 ? UNP Q9AF14 ? ? 'CLONING ARTIFACT' 0 3 1 2QIP MSE A 4 ? UNP Q9AF14 MET 1 'MODIFIED RESIDUE' 1 4 1 2QIP MSE A 78 ? UNP Q9AF14 MET 75 'MODIFIED RESIDUE' 75 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QIP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_percent_sol 50.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '2M Ammonium sulfate, 0.1M Bis-tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-02-02 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97927 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97927 # _reflns.entry_id 2QIP _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.48 _reflns.d_resolution_low 24.62 _reflns.number_all 31578 _reflns.number_obs 31578 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 45.96 _reflns.B_iso_Wilson_estimate 17.7 _reflns.pdbx_redundancy 5.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.48 _reflns_shell.d_res_low 1.51 _reflns_shell.percent_possible_all 93.7 _reflns_shell.Rmerge_I_obs 0.391 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.73 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1482 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QIP _refine.ls_number_reflns_obs 29978 _refine.ls_number_reflns_all 29978 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.62 _refine.ls_d_res_high 1.48 _refine.ls_percent_reflns_obs 99.50 _refine.ls_R_factor_obs 0.16346 _refine.ls_R_factor_all 0.16346 _refine.ls_R_factor_R_work 0.16237 _refine.ls_R_factor_R_free 0.18312 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1594 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.B_iso_mean 19.619 _refine.aniso_B[1][1] -0.02 _refine.aniso_B[2][2] -0.03 _refine.aniso_B[3][3] 0.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.075 _refine.pdbx_overall_ESU_R_Free 0.062 _refine.overall_SU_ML 0.033 _refine.overall_SU_B 1.833 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1313 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 178 _refine_hist.number_atoms_total 1515 _refine_hist.d_res_high 1.48 _refine_hist.d_res_low 24.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1371 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.360 1.950 ? 1849 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.578 5.000 ? 165 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.063 24.384 ? 73 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.539 15.000 ? 233 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.774 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.143 0.200 ? 202 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1049 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.198 0.200 ? 594 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.200 ? 953 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.143 0.200 ? 123 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.203 0.200 ? 68 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.163 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.283 1.500 ? 835 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.938 2.000 ? 1318 'X-RAY DIFFRACTION' ? r_scbond_it 4.578 3.000 ? 608 'X-RAY DIFFRACTION' ? r_scangle_it 4.474 4.500 ? 529 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 5.039 3.000 ? 1443 'X-RAY DIFFRACTION' ? r_sphericity_free 4.575 3.000 ? 178 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.782 3.000 ? 1349 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.480 _refine_ls_shell.d_res_low 1.518 _refine_ls_shell.number_reflns_R_work 2085 _refine_ls_shell.R_factor_R_work 0.196 _refine_ls_shell.percent_reflns_obs 94.92 _refine_ls_shell.R_factor_R_free 0.247 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2186 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QIP _struct.title 'Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633' _struct.pdbx_descriptor 'Protein of unknown function VPA0982' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QIP _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;APC85975, VPA0982, Vibrio parahaemolyticus RIMD 2210633, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Experimentally unknown. From molecular packing, it seems to form a dimer with its symmetry-related molecule (1-x,1-y,z).' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 18 ? ARG A 30 ? VAL A 15 ARG A 27 1 ? 13 HELX_P HELX_P2 2 ASP A 34 ? THR A 43 ? ASP A 31 THR A 40 1 ? 10 HELX_P HELX_P3 3 ASP A 60 ? GLY A 74 ? ASP A 57 GLY A 71 1 ? 15 HELX_P HELX_P4 4 TRP A 94 ? ALA A 106 ? TRP A 91 ALA A 103 1 ? 13 HELX_P HELX_P5 5 PRO A 107 ? VAL A 109 ? PRO A 104 VAL A 106 5 ? 3 HELX_P HELX_P6 6 ASP A 118 ? ASP A 120 ? ASP A 115 ASP A 117 5 ? 3 HELX_P HELX_P7 7 PHE A 121 ? ASN A 133 ? PHE A 118 ASN A 130 1 ? 13 HELX_P HELX_P8 8 VAL A 141 ? THR A 145 ? VAL A 138 THR A 142 5 ? 5 HELX_P HELX_P9 9 SER A 146 ? ALA A 153 ? SER A 143 ALA A 150 1 ? 8 HELX_P HELX_P10 10 ASP A 160 ? LEU A 164 ? ASP A 157 LEU A 161 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 4 C ? ? ? 1_555 A GLN 5 N ? ? A MSE 1 A GLN 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A VAL 77 C ? ? ? 1_555 A MSE 78 N ? ? A VAL 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.336 ? covale3 covale ? ? A MSE 78 C ? ? ? 1_555 A LEU 79 N ? ? A MSE 75 A LEU 76 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 76 ? LEU A 79 ? GLU A 73 LEU A 76 A 2 LYS A 46 ? ALA A 55 ? LYS A 43 ALA A 52 A 3 GLU A 10 ? ASP A 17 ? GLU A 7 ASP A 14 A 4 ARG A 111 ? VAL A 115 ? ARG A 108 VAL A 112 A 5 LYS A 135 ? GLY A 140 ? LYS A 132 GLY A 137 A 6 ASN A 155 ? ALA A 158 ? ASN A 152 ALA A 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MSE A 78 ? O MSE A 75 N ALA A 53 ? N ALA A 50 A 2 3 O TYR A 54 ? O TYR A 51 N VAL A 16 ? N VAL A 13 A 3 4 N ALA A 13 ? N ALA A 10 O ILE A 113 ? O ILE A 110 A 4 5 N LEU A 114 ? N LEU A 111 O THR A 137 ? O THR A 134 A 5 6 N VAL A 138 ? N VAL A 135 O VAL A 157 ? O VAL A 154 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 301' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 302' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 303' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 304' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 305' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TYR A 40 ? TYR A 37 . ? 8_555 ? 2 AC1 7 LYS A 80 ? LYS A 77 . ? 1_555 ? 3 AC1 7 PRO A 81 ? PRO A 78 . ? 1_555 ? 4 AC1 7 TYR A 82 ? TYR A 79 . ? 1_555 ? 5 AC1 7 ILE A 83 ? ILE A 80 . ? 1_555 ? 6 AC1 7 HOH H . ? HOH A 383 . ? 1_555 ? 7 AC1 7 HOH H . ? HOH A 478 . ? 1_555 ? 8 AC2 7 LYS A 11 ? LYS A 8 . ? 1_555 ? 9 AC2 7 VAL A 109 ? VAL A 106 . ? 1_555 ? 10 AC2 7 ASP A 110 ? ASP A 107 . ? 1_555 ? 11 AC2 7 GLN A 130 ? GLN A 127 . ? 4_565 ? 12 AC2 7 LYS A 134 ? LYS A 131 . ? 1_555 ? 13 AC2 7 HOH H . ? HOH A 321 . ? 4_565 ? 14 AC2 7 HOH H . ? HOH A 346 . ? 1_555 ? 15 AC3 6 GLU A 104 ? GLU A 101 . ? 2_665 ? 16 AC3 6 ARG A 127 ? ARG A 124 . ? 1_555 ? 17 AC3 6 GLN A 130 ? GLN A 127 . ? 1_555 ? 18 AC3 6 ARG A 131 ? ARG A 128 . ? 1_555 ? 19 AC3 6 HOH H . ? HOH A 346 . ? 4_565 ? 20 AC3 6 HOH H . ? HOH A 398 . ? 4_565 ? 21 AC4 3 GLU A 126 ? GLU A 123 . ? 2_665 ? 22 AC4 3 HOH H . ? HOH A 335 . ? 1_555 ? 23 AC4 3 HOH H . ? HOH A 396 . ? 2_665 ? 24 AC5 6 TYR A 82 ? TYR A 79 . ? 1_555 ? 25 AC5 6 GLN A 84 ? GLN A 81 . ? 1_555 ? 26 AC5 6 ARG A 85 ? ARG A 82 . ? 1_555 ? 27 AC5 6 LYS A 91 ? LYS A 88 . ? 1_555 ? 28 AC5 6 HOH H . ? HOH A 370 . ? 1_555 ? 29 AC5 6 HOH H . ? HOH A 457 . ? 1_555 ? 30 AC6 6 LEU A 79 ? LEU A 76 . ? 8_455 ? 31 AC6 6 PRO A 81 ? PRO A 78 . ? 8_455 ? 32 AC6 6 ASP A 162 ? ASP A 159 . ? 1_555 ? 33 AC6 6 HOH H . ? HOH A 329 . ? 1_555 ? 34 AC6 6 HOH H . ? HOH A 369 . ? 1_555 ? 35 AC6 6 HOH H . ? HOH A 431 . ? 1_555 ? # _database_PDB_matrix.entry_id 2QIP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QIP _atom_sites.fract_transf_matrix[1][1] 0.016075 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013327 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012435 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 GLN 5 2 2 GLN GLN A . n A 1 6 SER 6 3 3 SER SER A . n A 1 7 ASP 7 4 4 ASP ASP A . n A 1 8 HIS 8 5 5 HIS HIS A . n A 1 9 LYS 9 6 6 LYS LYS A . n A 1 10 GLU 10 7 7 GLU GLU A . n A 1 11 LYS 11 8 8 LYS LYS A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 ASP 17 14 14 ASP ASP A . n A 1 18 VAL 18 15 15 VAL VAL A . n A 1 19 GLN 19 16 16 GLN GLN A . n A 1 20 ASN 20 17 17 ASN ASN A . n A 1 21 VAL 21 18 18 VAL VAL A . n A 1 22 TYR 22 19 19 TYR TYR A . n A 1 23 TYR 23 20 20 TYR TYR A . n A 1 24 THR 24 21 21 THR THR A . n A 1 25 CYS 25 22 22 CYS CYS A . n A 1 26 ARG 26 23 23 ARG ARG A . n A 1 27 GLU 27 24 24 GLU GLU A . n A 1 28 ALA 28 25 25 ALA ALA A . n A 1 29 TYR 29 26 26 TYR TYR A . n A 1 30 ARG 30 27 27 ARG ARG A . n A 1 31 SER 31 28 28 SER SER A . n A 1 32 ASN 32 29 29 ASN ASN A . n A 1 33 PHE 33 30 30 PHE PHE A . n A 1 34 ASP 34 31 31 ASP ASP A . n A 1 35 TYR 35 32 32 TYR TYR A . n A 1 36 ASN 36 33 33 ASN ASN A . n A 1 37 GLN 37 34 34 GLN GLN A . n A 1 38 PHE 38 35 35 PHE PHE A . n A 1 39 TRP 39 36 36 TRP TRP A . n A 1 40 TYR 40 37 37 TYR TYR A . n A 1 41 VAL 41 38 38 VAL VAL A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 THR 43 40 40 THR THR A . n A 1 44 GLN 44 41 41 GLN GLN A . n A 1 45 GLU 45 42 42 GLU GLU A . n A 1 46 LYS 46 43 43 LYS LYS A . n A 1 47 GLU 47 44 44 GLU GLU A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 VAL 49 46 46 VAL VAL A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 LYS 52 49 49 LYS LYS A . n A 1 53 ALA 53 50 50 ALA ALA A . n A 1 54 TYR 54 51 51 TYR TYR A . n A 1 55 ALA 55 52 52 ALA ALA A . n A 1 56 ILE 56 53 53 ILE ILE A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 SER 58 55 55 SER SER A . n A 1 59 ASN 59 56 56 ASN ASN A . n A 1 60 ASP 60 57 57 ASP ASP A . n A 1 61 PRO 61 58 58 PRO PRO A . n A 1 62 LYS 62 59 59 LYS LYS A . n A 1 63 GLN 63 60 60 GLN GLN A . n A 1 64 ARG 64 61 61 ARG ARG A . n A 1 65 GLN 65 62 62 GLN GLN A . n A 1 66 PHE 66 63 63 PHE PHE A . n A 1 67 HIS 67 64 64 HIS HIS A . n A 1 68 HIS 68 65 65 HIS HIS A . n A 1 69 ILE 69 66 66 ILE ILE A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 ARG 71 68 68 ARG ARG A . n A 1 72 GLY 72 69 69 GLY GLY A . n A 1 73 VAL 73 70 70 VAL VAL A . n A 1 74 GLY 74 71 71 GLY GLY A . n A 1 75 PHE 75 72 72 PHE PHE A . n A 1 76 GLU 76 73 73 GLU GLU A . n A 1 77 VAL 77 74 74 VAL VAL A . n A 1 78 MSE 78 75 75 MSE MSE A . n A 1 79 LEU 79 76 76 LEU LEU A . n A 1 80 LYS 80 77 77 LYS LYS A . n A 1 81 PRO 81 78 78 PRO PRO A . n A 1 82 TYR 82 79 79 TYR TYR A . n A 1 83 ILE 83 80 80 ILE ILE A . n A 1 84 GLN 84 81 81 GLN GLN A . n A 1 85 ARG 85 82 82 ARG ARG A . n A 1 86 ARG 86 83 83 ARG ARG A . n A 1 87 ASP 87 84 84 ASP ASP A . n A 1 88 GLY 88 85 85 GLY GLY A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 LYS 91 88 88 LYS LYS A . n A 1 92 GLY 92 89 89 GLY GLY A . n A 1 93 ASP 93 90 90 ASP ASP A . n A 1 94 TRP 94 91 91 TRP TRP A . n A 1 95 ASP 95 92 92 ASP ASP A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 GLY 97 94 94 GLY GLY A . n A 1 98 ILE 98 95 95 ILE ILE A . n A 1 99 THR 99 96 96 THR THR A . n A 1 100 LEU 100 97 97 LEU LEU A . n A 1 101 ASP 101 98 98 ASP ASP A . n A 1 102 ALA 102 99 99 ALA ALA A . n A 1 103 ILE 103 100 100 ILE ILE A . n A 1 104 GLU 104 101 101 GLU GLU A . n A 1 105 ILE 105 102 102 ILE ILE A . n A 1 106 ALA 106 103 103 ALA ALA A . n A 1 107 PRO 107 104 104 PRO PRO A . n A 1 108 ASP 108 105 105 ASP ASP A . n A 1 109 VAL 109 106 106 VAL VAL A . n A 1 110 ASP 110 107 107 ASP ASP A . n A 1 111 ARG 111 108 108 ARG ARG A . n A 1 112 VAL 112 109 109 VAL VAL A . n A 1 113 ILE 113 110 110 ILE ILE A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 SER 116 113 113 SER SER A . n A 1 117 GLY 117 114 114 GLY GLY A . n A 1 118 ASP 118 115 115 ASP ASP A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 PHE 121 118 118 PHE PHE A . n A 1 122 SER 122 119 119 SER SER A . n A 1 123 LEU 123 120 120 LEU LEU A . n A 1 124 LEU 124 121 121 LEU LEU A . n A 1 125 VAL 125 122 122 VAL VAL A . n A 1 126 GLU 126 123 123 GLU GLU A . n A 1 127 ARG 127 124 124 ARG ARG A . n A 1 128 ILE 128 125 125 ILE ILE A . n A 1 129 GLN 129 126 126 GLN GLN A . n A 1 130 GLN 130 127 127 GLN GLN A . n A 1 131 ARG 131 128 128 ARG ARG A . n A 1 132 TYR 132 129 129 TYR TYR A . n A 1 133 ASN 133 130 130 ASN ASN A . n A 1 134 LYS 134 131 131 LYS LYS A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 VAL 136 133 133 VAL VAL A . n A 1 137 THR 137 134 134 THR THR A . n A 1 138 VAL 138 135 135 VAL VAL A . n A 1 139 TYR 139 136 136 TYR TYR A . n A 1 140 GLY 140 137 137 GLY GLY A . n A 1 141 VAL 141 138 138 VAL VAL A . n A 1 142 PRO 142 139 139 PRO PRO A . n A 1 143 ARG 143 140 140 ARG ARG A . n A 1 144 LEU 144 141 141 LEU LEU A . n A 1 145 THR 145 142 142 THR THR A . n A 1 146 SER 146 143 143 SER SER A . n A 1 147 GLN 147 144 144 GLN GLN A . n A 1 148 THR 148 145 145 THR THR A . n A 1 149 LEU 149 146 146 LEU LEU A . n A 1 150 ILE 150 147 147 ILE ILE A . n A 1 151 ASP 151 148 148 ASP ASP A . n A 1 152 CYS 152 149 149 CYS CYS A . n A 1 153 ALA 153 150 150 ALA ALA A . n A 1 154 ASP 154 151 151 ASP ASP A . n A 1 155 ASN 155 152 152 ASN ASN A . n A 1 156 PHE 156 153 153 PHE PHE A . n A 1 157 VAL 157 154 154 VAL VAL A . n A 1 158 ALA 158 155 155 ALA ALA A . n A 1 159 ILE 159 156 156 ILE ILE A . n A 1 160 ASP 160 157 157 ASP ASP A . n A 1 161 ASP 161 158 158 ASP ASP A . n A 1 162 ASP 162 159 159 ASP ASP A . n A 1 163 PHE 163 160 160 PHE PHE A . n A 1 164 LEU 164 161 161 LEU LEU A . n A 1 165 LEU 165 162 162 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 301 1 EDO EDO A . C 2 EDO 1 302 2 EDO EDO A . D 2 EDO 1 303 3 EDO EDO A . E 2 EDO 1 304 4 EDO EDO A . F 2 EDO 1 305 5 EDO EDO A . G 2 EDO 1 306 6 EDO EDO A . H 3 HOH 1 307 1 HOH HOH A . H 3 HOH 2 308 2 HOH HOH A . H 3 HOH 3 309 4 HOH HOH A . H 3 HOH 4 310 5 HOH HOH A . H 3 HOH 5 311 6 HOH HOH A . H 3 HOH 6 312 8 HOH HOH A . H 3 HOH 7 313 9 HOH HOH A . H 3 HOH 8 314 10 HOH HOH A . H 3 HOH 9 315 11 HOH HOH A . H 3 HOH 10 316 12 HOH HOH A . H 3 HOH 11 317 13 HOH HOH A . H 3 HOH 12 318 14 HOH HOH A . H 3 HOH 13 319 15 HOH HOH A . H 3 HOH 14 320 16 HOH HOH A . H 3 HOH 15 321 17 HOH HOH A . H 3 HOH 16 322 18 HOH HOH A . H 3 HOH 17 323 19 HOH HOH A . H 3 HOH 18 324 20 HOH HOH A . H 3 HOH 19 325 21 HOH HOH A . H 3 HOH 20 326 22 HOH HOH A . H 3 HOH 21 327 23 HOH HOH A . H 3 HOH 22 328 25 HOH HOH A . H 3 HOH 23 329 26 HOH HOH A . H 3 HOH 24 330 27 HOH HOH A . H 3 HOH 25 331 28 HOH HOH A . H 3 HOH 26 332 29 HOH HOH A . H 3 HOH 27 333 30 HOH HOH A . H 3 HOH 28 334 31 HOH HOH A . H 3 HOH 29 335 33 HOH HOH A . H 3 HOH 30 336 35 HOH HOH A . H 3 HOH 31 337 36 HOH HOH A . H 3 HOH 32 338 37 HOH HOH A . H 3 HOH 33 339 38 HOH HOH A . H 3 HOH 34 340 40 HOH HOH A . H 3 HOH 35 341 41 HOH HOH A . H 3 HOH 36 342 42 HOH HOH A . H 3 HOH 37 343 44 HOH HOH A . H 3 HOH 38 344 45 HOH HOH A . H 3 HOH 39 345 46 HOH HOH A . H 3 HOH 40 346 47 HOH HOH A . H 3 HOH 41 347 48 HOH HOH A . H 3 HOH 42 348 49 HOH HOH A . H 3 HOH 43 349 51 HOH HOH A . H 3 HOH 44 350 53 HOH HOH A . H 3 HOH 45 351 54 HOH HOH A . H 3 HOH 46 352 55 HOH HOH A . H 3 HOH 47 353 56 HOH HOH A . H 3 HOH 48 354 57 HOH HOH A . H 3 HOH 49 355 58 HOH HOH A . H 3 HOH 50 356 59 HOH HOH A . H 3 HOH 51 357 60 HOH HOH A . H 3 HOH 52 358 61 HOH HOH A . H 3 HOH 53 359 62 HOH HOH A . H 3 HOH 54 360 63 HOH HOH A . H 3 HOH 55 361 64 HOH HOH A . H 3 HOH 56 362 69 HOH HOH A . H 3 HOH 57 363 70 HOH HOH A . H 3 HOH 58 364 73 HOH HOH A . H 3 HOH 59 365 76 HOH HOH A . H 3 HOH 60 366 77 HOH HOH A . H 3 HOH 61 367 78 HOH HOH A . H 3 HOH 62 368 79 HOH HOH A . H 3 HOH 63 369 80 HOH HOH A . H 3 HOH 64 370 81 HOH HOH A . H 3 HOH 65 371 85 HOH HOH A . H 3 HOH 66 372 86 HOH HOH A . H 3 HOH 67 373 87 HOH HOH A . H 3 HOH 68 374 88 HOH HOH A . H 3 HOH 69 375 89 HOH HOH A . H 3 HOH 70 376 91 HOH HOH A . H 3 HOH 71 377 93 HOH HOH A . H 3 HOH 72 378 95 HOH HOH A . H 3 HOH 73 379 98 HOH HOH A . H 3 HOH 74 380 99 HOH HOH A . H 3 HOH 75 381 100 HOH HOH A . H 3 HOH 76 382 103 HOH HOH A . H 3 HOH 77 383 104 HOH HOH A . H 3 HOH 78 384 106 HOH HOH A . H 3 HOH 79 385 107 HOH HOH A . H 3 HOH 80 386 109 HOH HOH A . H 3 HOH 81 387 110 HOH HOH A . H 3 HOH 82 388 111 HOH HOH A . H 3 HOH 83 389 113 HOH HOH A . H 3 HOH 84 390 115 HOH HOH A . H 3 HOH 85 391 117 HOH HOH A . H 3 HOH 86 392 118 HOH HOH A . H 3 HOH 87 393 119 HOH HOH A . H 3 HOH 88 394 121 HOH HOH A . H 3 HOH 89 395 122 HOH HOH A . H 3 HOH 90 396 124 HOH HOH A . H 3 HOH 91 397 125 HOH HOH A . H 3 HOH 92 398 126 HOH HOH A . H 3 HOH 93 399 127 HOH HOH A . H 3 HOH 94 400 128 HOH HOH A . H 3 HOH 95 401 130 HOH HOH A . H 3 HOH 96 402 131 HOH HOH A . H 3 HOH 97 403 133 HOH HOH A . H 3 HOH 98 404 134 HOH HOH A . H 3 HOH 99 405 135 HOH HOH A . H 3 HOH 100 406 136 HOH HOH A . H 3 HOH 101 407 137 HOH HOH A . H 3 HOH 102 408 142 HOH HOH A . H 3 HOH 103 409 145 HOH HOH A . H 3 HOH 104 410 146 HOH HOH A . H 3 HOH 105 411 147 HOH HOH A . H 3 HOH 106 412 148 HOH HOH A . H 3 HOH 107 413 149 HOH HOH A . H 3 HOH 108 414 150 HOH HOH A . H 3 HOH 109 415 151 HOH HOH A . H 3 HOH 110 416 152 HOH HOH A . H 3 HOH 111 417 153 HOH HOH A . H 3 HOH 112 418 154 HOH HOH A . H 3 HOH 113 419 155 HOH HOH A . H 3 HOH 114 420 156 HOH HOH A . H 3 HOH 115 421 157 HOH HOH A . H 3 HOH 116 422 160 HOH HOH A . H 3 HOH 117 423 162 HOH HOH A . H 3 HOH 118 424 163 HOH HOH A . H 3 HOH 119 425 164 HOH HOH A . H 3 HOH 120 426 168 HOH HOH A . H 3 HOH 121 427 171 HOH HOH A . H 3 HOH 122 428 172 HOH HOH A . H 3 HOH 123 429 173 HOH HOH A . H 3 HOH 124 430 174 HOH HOH A . H 3 HOH 125 431 175 HOH HOH A . H 3 HOH 126 432 179 HOH HOH A . H 3 HOH 127 433 180 HOH HOH A . H 3 HOH 128 434 182 HOH HOH A . H 3 HOH 129 435 185 HOH HOH A . H 3 HOH 130 436 186 HOH HOH A . H 3 HOH 131 437 187 HOH HOH A . H 3 HOH 132 438 188 HOH HOH A . H 3 HOH 133 439 189 HOH HOH A . H 3 HOH 134 440 190 HOH HOH A . H 3 HOH 135 441 191 HOH HOH A . H 3 HOH 136 442 192 HOH HOH A . H 3 HOH 137 443 193 HOH HOH A . H 3 HOH 138 444 194 HOH HOH A . H 3 HOH 139 445 197 HOH HOH A . H 3 HOH 140 446 198 HOH HOH A . H 3 HOH 141 447 199 HOH HOH A . H 3 HOH 142 448 201 HOH HOH A . H 3 HOH 143 449 202 HOH HOH A . H 3 HOH 144 450 203 HOH HOH A . H 3 HOH 145 451 204 HOH HOH A . H 3 HOH 146 452 205 HOH HOH A . H 3 HOH 147 453 209 HOH HOH A . H 3 HOH 148 454 210 HOH HOH A . H 3 HOH 149 455 214 HOH HOH A . H 3 HOH 150 456 218 HOH HOH A . H 3 HOH 151 457 220 HOH HOH A . H 3 HOH 152 458 225 HOH HOH A . H 3 HOH 153 459 227 HOH HOH A . H 3 HOH 154 460 231 HOH HOH A . H 3 HOH 155 461 233 HOH HOH A . H 3 HOH 156 462 238 HOH HOH A . H 3 HOH 157 463 239 HOH HOH A . H 3 HOH 158 464 240 HOH HOH A . H 3 HOH 159 465 241 HOH HOH A . H 3 HOH 160 466 245 HOH HOH A . H 3 HOH 161 467 246 HOH HOH A . H 3 HOH 162 468 247 HOH HOH A . H 3 HOH 163 469 248 HOH HOH A . H 3 HOH 164 470 250 HOH HOH A . H 3 HOH 165 471 256 HOH HOH A . H 3 HOH 166 472 259 HOH HOH A . H 3 HOH 167 473 260 HOH HOH A . H 3 HOH 168 474 263 HOH HOH A . H 3 HOH 169 475 267 HOH HOH A . H 3 HOH 170 476 268 HOH HOH A . H 3 HOH 171 477 269 HOH HOH A . H 3 HOH 172 478 270 HOH HOH A . H 3 HOH 173 479 272 HOH HOH A . H 3 HOH 174 480 276 HOH HOH A . H 3 HOH 175 481 280 HOH HOH A . H 3 HOH 176 482 283 HOH HOH A . H 3 HOH 177 483 287 HOH HOH A . H 3 HOH 178 484 290 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 78 A MSE 75 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 62.2070000000 0.0000000000 -1.0000000000 0.0000000000 75.0340000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 354 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-3000 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 MLPHARE phasing . ? 5 HKL-3000 phasing . ? 6 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS EXPERIMENTALLY UNKNOWN AT THE TIME OF DEPOSITION. FROM MOLECULAR PACKING IT SEEMS TO FORM A DIMER WITH ITS SYMMETRY-RELATED MOLECULE. SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 88 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 478 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.00 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 113 ? ? -171.38 147.27 2 1 ASP A 157 ? ? -139.65 -158.64 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #