HEADER TRANSFERASE 07-JUL-07 2QJF TITLE CRYSTAL STRUCTURE OF ATP-SULFURYLASE DOMAIN OF HUMAN PAPS SYNTHETASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE COMPND 3 SYNTHETASE 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: SULFATE ADENYLYLTRANSFERASE DOMAIN, RESIDUE 220-624; COMPND 6 SYNONYM: PAPS SYNTHETASE 1, PAPSS 1, SULFURYLASE KINASE 1, SK1, SK 1; COMPND 7 EC: 2.7.7.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAPSS1, ATPSK1, PAPSS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-RB KEYWDS ATP-SULFURYLASE, PAPS-SYNTHETASE, MONOMER-DIMER EQUILLIBRIUM, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SEKULIC,A.LAVIE REVDAT 3 30-AUG-23 2QJF 1 REMARK REVDAT 2 24-FEB-09 2QJF 1 VERSN REVDAT 1 11-NOV-08 2QJF 0 JRNL AUTH N.SEKULIC,I.PAARMANN,M.KONRAD,A.LAVIE JRNL TITL ATP-SULFURYLASE DOMAIN OF HUMAN BIFUNCTIONAL PAPS-SYNTHETASE JRNL TITL 2 OSCILLATES BETWEEN DIMERIC AND MONOMERIC FORMS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 350 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6275 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 686 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.299 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6507 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8842 ; 1.425 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 779 ; 5.858 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 309 ;33.940 ;23.463 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1090 ;16.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.712 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 935 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5014 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2966 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4372 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 636 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3902 ; 0.686 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6282 ; 1.333 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2623 ; 1.922 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2560 ; 3.176 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91636501 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 12.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.78 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 FOR SHELL : 3.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1I2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOTHER LIQUOR: 10% PEG 10K, 0.1M HEPES REMARK 280 PH 7.0; PROTEIN SOLUTION: 10MG/ML, ATP-SULFURYLASE, 5MM APS, REMARK 280 25MM TRIS/HCL PH 7.5, 25MM KCL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.95000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 220 REMARK 465 GLN A 221 REMARK 465 GLU A 222 REMARK 465 ARG A 223 REMARK 465 ASP A 224 REMARK 465 ILE A 225 REMARK 465 VAL A 226 REMARK 465 PRO A 227 REMARK 465 VAL A 228 REMARK 465 ASP A 229 REMARK 465 ALA A 230 REMARK 465 SER A 231 REMARK 465 TYR A 232 REMARK 465 LYS A 623 REMARK 465 ALA A 624 REMARK 465 LEU B 220 REMARK 465 GLN B 221 REMARK 465 GLU B 222 REMARK 465 ARG B 223 REMARK 465 ASP B 224 REMARK 465 ILE B 225 REMARK 465 VAL B 226 REMARK 465 PRO B 227 REMARK 465 VAL B 228 REMARK 465 ASP B 229 REMARK 465 ALA B 230 REMARK 465 SER B 231 REMARK 465 LYS B 623 REMARK 465 ALA B 624 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 LYS A 568 CG CD CE NZ REMARK 470 GLN A 599 CG CD OE1 NE2 REMARK 470 GLU A 616 CG CD OE1 OE2 REMARK 470 TYR B 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 LEU B 246 CG CD1 CD2 REMARK 470 LYS B 361 CG CD CE NZ REMARK 470 LYS B 408 CG CD CE NZ REMARK 470 LYS B 437 CG CD CE NZ REMARK 470 GLU B 531 CB CG CD OE1 OE2 REMARK 470 LYS B 568 CG CD CE NZ REMARK 470 LYS B 619 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1014 O HOH A 1342 1.59 REMARK 500 O HOH B 1105 O HOH B 1325 1.78 REMARK 500 O HOH B 1032 O HOH B 1317 1.93 REMARK 500 O HOH B 1119 O HOH B 1327 1.99 REMARK 500 O HOH B 1047 O HOH B 1279 2.07 REMARK 500 O HOH A 1084 O HOH A 1097 2.11 REMARK 500 O HOH A 1274 O HOH B 1335 2.17 REMARK 500 O HOH A 1066 O HOH A 1188 2.19 REMARK 500 OD1 ASP A 385 O HOH A 1053 2.19 REMARK 500 O HOH A 1075 O HOH A 1099 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1340 O HOH B 1117 1655 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 384 -113.17 -98.37 REMARK 500 GLU A 597 -9.29 177.46 REMARK 500 ALA B 325 143.42 -172.44 REMARK 500 LEU B 384 -96.91 -84.01 REMARK 500 GLU B 531 -95.70 136.77 REMARK 500 LEU B 621 24.09 -76.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX B 100 DBREF 2QJF A 220 624 UNP O43252 PAPS1_HUMAN 220 624 DBREF 2QJF B 220 624 UNP O43252 PAPS1_HUMAN 220 624 SEQRES 1 A 405 LEU GLN GLU ARG ASP ILE VAL PRO VAL ASP ALA SER TYR SEQRES 2 A 405 GLU VAL LYS GLU LEU TYR VAL PRO GLU ASN LYS LEU HIS SEQRES 3 A 405 LEU ALA LYS THR ASP ALA GLU THR LEU PRO ALA LEU LYS SEQRES 4 A 405 ILE ASN LYS VAL ASP MET GLN TRP VAL GLN VAL LEU ALA SEQRES 5 A 405 GLU GLY TRP ALA THR PRO LEU ASN GLY PHE MET ARG GLU SEQRES 6 A 405 ARG GLU TYR LEU GLN CYS LEU HIS PHE ASP CYS LEU LEU SEQRES 7 A 405 ASP GLY GLY VAL ILE ASN LEU SER VAL PRO ILE VAL LEU SEQRES 8 A 405 THR ALA THR HIS GLU ASP LYS GLU ARG LEU ASP GLY CYS SEQRES 9 A 405 THR ALA PHE ALA LEU MET TYR GLU GLY ARG ARG VAL ALA SEQRES 10 A 405 ILE LEU ARG ASN PRO GLU PHE PHE GLU HIS ARG LYS GLU SEQRES 11 A 405 GLU ARG CYS ALA ARG GLN TRP GLY THR THR CYS LYS ASN SEQRES 12 A 405 HIS PRO TYR ILE LYS MET VAL MET GLU GLN GLY ASP TRP SEQRES 13 A 405 LEU ILE GLY GLY ASP LEU GLN VAL LEU ASP ARG VAL TYR SEQRES 14 A 405 TRP ASN ASP GLY LEU ASP GLN TYR ARG LEU THR PRO THR SEQRES 15 A 405 GLU LEU LYS GLN LYS PHE LYS ASP MET ASN ALA ASP ALA SEQRES 16 A 405 VAL PHE ALA PHE GLN LEU ARG ASN PRO VAL HIS ASN GLY SEQRES 17 A 405 HIS ALA LEU LEU MET GLN ASP THR HIS LYS GLN LEU LEU SEQRES 18 A 405 GLU ARG GLY TYR ARG ARG PRO VAL LEU LEU LEU HIS PRO SEQRES 19 A 405 LEU GLY GLY TRP THR LYS ASP ASP ASP VAL PRO LEU MET SEQRES 20 A 405 TRP ARG MET LYS GLN HIS ALA ALA VAL LEU GLU GLU GLY SEQRES 21 A 405 VAL LEU ASN PRO GLU THR THR VAL VAL ALA ILE PHE PRO SEQRES 22 A 405 SER PRO MET MET TYR ALA GLY PRO THR GLU VAL GLN TRP SEQRES 23 A 405 HIS CYS ARG ALA ARG MET VAL ALA GLY ALA ASN PHE TYR SEQRES 24 A 405 ILE VAL GLY ARG ASP PRO ALA GLY MET PRO HIS PRO GLU SEQRES 25 A 405 THR GLY LYS ASP LEU TYR GLU PRO SER HIS GLY ALA LYS SEQRES 26 A 405 VAL LEU THR MET ALA PRO GLY LEU ILE THR LEU GLU ILE SEQRES 27 A 405 VAL PRO PHE ARG VAL ALA ALA TYR ASN LYS LYS LYS LYS SEQRES 28 A 405 ARG MET ASP TYR TYR ASP SER GLU HIS HIS GLU ASP PHE SEQRES 29 A 405 GLU PHE ILE SER GLY THR ARG MET ARG LYS LEU ALA ARG SEQRES 30 A 405 GLU GLY GLN LYS PRO PRO GLU GLY PHE MET ALA PRO LYS SEQRES 31 A 405 ALA TRP THR VAL LEU THR GLU TYR TYR LYS SER LEU GLU SEQRES 32 A 405 LYS ALA SEQRES 1 B 405 LEU GLN GLU ARG ASP ILE VAL PRO VAL ASP ALA SER TYR SEQRES 2 B 405 GLU VAL LYS GLU LEU TYR VAL PRO GLU ASN LYS LEU HIS SEQRES 3 B 405 LEU ALA LYS THR ASP ALA GLU THR LEU PRO ALA LEU LYS SEQRES 4 B 405 ILE ASN LYS VAL ASP MET GLN TRP VAL GLN VAL LEU ALA SEQRES 5 B 405 GLU GLY TRP ALA THR PRO LEU ASN GLY PHE MET ARG GLU SEQRES 6 B 405 ARG GLU TYR LEU GLN CYS LEU HIS PHE ASP CYS LEU LEU SEQRES 7 B 405 ASP GLY GLY VAL ILE ASN LEU SER VAL PRO ILE VAL LEU SEQRES 8 B 405 THR ALA THR HIS GLU ASP LYS GLU ARG LEU ASP GLY CYS SEQRES 9 B 405 THR ALA PHE ALA LEU MET TYR GLU GLY ARG ARG VAL ALA SEQRES 10 B 405 ILE LEU ARG ASN PRO GLU PHE PHE GLU HIS ARG LYS GLU SEQRES 11 B 405 GLU ARG CYS ALA ARG GLN TRP GLY THR THR CYS LYS ASN SEQRES 12 B 405 HIS PRO TYR ILE LYS MET VAL MET GLU GLN GLY ASP TRP SEQRES 13 B 405 LEU ILE GLY GLY ASP LEU GLN VAL LEU ASP ARG VAL TYR SEQRES 14 B 405 TRP ASN ASP GLY LEU ASP GLN TYR ARG LEU THR PRO THR SEQRES 15 B 405 GLU LEU LYS GLN LYS PHE LYS ASP MET ASN ALA ASP ALA SEQRES 16 B 405 VAL PHE ALA PHE GLN LEU ARG ASN PRO VAL HIS ASN GLY SEQRES 17 B 405 HIS ALA LEU LEU MET GLN ASP THR HIS LYS GLN LEU LEU SEQRES 18 B 405 GLU ARG GLY TYR ARG ARG PRO VAL LEU LEU LEU HIS PRO SEQRES 19 B 405 LEU GLY GLY TRP THR LYS ASP ASP ASP VAL PRO LEU MET SEQRES 20 B 405 TRP ARG MET LYS GLN HIS ALA ALA VAL LEU GLU GLU GLY SEQRES 21 B 405 VAL LEU ASN PRO GLU THR THR VAL VAL ALA ILE PHE PRO SEQRES 22 B 405 SER PRO MET MET TYR ALA GLY PRO THR GLU VAL GLN TRP SEQRES 23 B 405 HIS CYS ARG ALA ARG MET VAL ALA GLY ALA ASN PHE TYR SEQRES 24 B 405 ILE VAL GLY ARG ASP PRO ALA GLY MET PRO HIS PRO GLU SEQRES 25 B 405 THR GLY LYS ASP LEU TYR GLU PRO SER HIS GLY ALA LYS SEQRES 26 B 405 VAL LEU THR MET ALA PRO GLY LEU ILE THR LEU GLU ILE SEQRES 27 B 405 VAL PRO PHE ARG VAL ALA ALA TYR ASN LYS LYS LYS LYS SEQRES 28 B 405 ARG MET ASP TYR TYR ASP SER GLU HIS HIS GLU ASP PHE SEQRES 29 B 405 GLU PHE ILE SER GLY THR ARG MET ARG LYS LEU ALA ARG SEQRES 30 B 405 GLU GLY GLN LYS PRO PRO GLU GLY PHE MET ALA PRO LYS SEQRES 31 B 405 ALA TRP THR VAL LEU THR GLU TYR TYR LYS SER LEU GLU SEQRES 32 B 405 LYS ALA HET K A1001 1 HET ADX A 100 27 HET K B1002 1 HET ADX B 100 27 HETNAM K POTASSIUM ION HETNAM ADX ADENOSINE-5'-PHOSPHOSULFATE FORMUL 3 K 2(K 1+) FORMUL 4 ADX 2(C10 H14 N5 O10 P S) FORMUL 7 HOH *686(H2 O) HELIX 1 1 LYS A 243 THR A 253 1 11 HELIX 2 2 ASN A 260 GLY A 273 1 14 HELIX 3 3 ARG A 283 ASP A 294 1 12 HELIX 4 4 THR A 313 ASP A 321 1 9 HELIX 5 5 ARG A 347 GLY A 357 1 11 HELIX 6 6 HIS A 363 GLU A 371 1 9 HELIX 7 7 LEU A 393 ARG A 397 5 5 HELIX 8 8 THR A 399 MET A 410 1 12 HELIX 9 9 HIS A 425 GLY A 443 1 19 HELIX 10 10 PRO A 464 GLU A 478 1 15 HELIX 11 11 ASN A 482 GLU A 484 5 3 HELIX 12 12 ALA A 498 ALA A 513 1 16 HELIX 13 13 SER A 540 ALA A 549 1 10 HELIX 14 14 ASP A 576 GLU A 581 5 6 HELIX 15 15 SER A 587 ARG A 596 1 10 HELIX 16 16 ALA A 607 GLU A 622 1 16 HELIX 17 17 PRO B 240 ASN B 242 5 3 HELIX 18 18 LYS B 243 LEU B 254 1 12 HELIX 19 19 ASN B 260 GLU B 272 1 13 HELIX 20 20 ARG B 283 ASP B 294 1 12 HELIX 21 21 THR B 313 ASP B 321 1 9 HELIX 22 22 ARG B 347 GLY B 357 1 11 HELIX 23 23 HIS B 363 GLU B 371 1 9 HELIX 24 24 LEU B 393 ARG B 397 5 5 HELIX 25 25 THR B 399 MET B 410 1 12 HELIX 26 26 HIS B 425 GLY B 443 1 19 HELIX 27 27 PRO B 464 GLU B 478 1 15 HELIX 28 28 ASN B 482 GLU B 484 5 3 HELIX 29 29 GLY B 499 ALA B 513 1 15 HELIX 30 30 SER B 540 ALA B 549 1 10 HELIX 31 31 ASP B 576 GLU B 581 5 6 HELIX 32 32 SER B 587 GLU B 597 1 11 HELIX 33 33 ALA B 607 LEU B 621 1 15 SHEET 1 A 5 ALA A 256 LYS A 258 0 SHEET 2 A 5 ALA A 325 TYR A 330 1 O MET A 329 N LEU A 257 SHEET 3 A 5 ARG A 333 GLU A 345 -1 O LEU A 338 N PHE A 326 SHEET 4 A 5 TRP A 375 VAL A 383 -1 O ASP A 380 N ARG A 339 SHEET 5 A 5 GLY A 280 PHE A 281 -1 N PHE A 281 O GLY A 379 SHEET 1 B 5 ALA A 256 LYS A 258 0 SHEET 2 B 5 ALA A 325 TYR A 330 1 O MET A 329 N LEU A 257 SHEET 3 B 5 ARG A 333 GLU A 345 -1 O LEU A 338 N PHE A 326 SHEET 4 B 5 TRP A 375 VAL A 383 -1 O ASP A 380 N ARG A 339 SHEET 5 B 5 LEU A 310 ALA A 312 -1 N ALA A 312 O TRP A 375 SHEET 1 C 2 CYS A 295 LEU A 296 0 SHEET 2 C 2 ILE A 302 ASN A 303 -1 O ILE A 302 N LEU A 296 SHEET 1 D 5 THR A 486 VAL A 488 0 SHEET 2 D 5 PRO A 447 PRO A 453 1 N LEU A 449 O VAL A 487 SHEET 3 D 5 ALA A 414 LEU A 420 1 N PHE A 418 O LEU A 450 SHEET 4 D 5 PHE A 517 VAL A 520 1 O PHE A 517 N ALA A 417 SHEET 5 D 5 GLU A 556 PRO A 559 1 O VAL A 558 N TYR A 518 SHEET 1 E 3 ARG A 571 TYR A 574 0 SHEET 2 E 3 ALA A 563 ASN A 566 -1 N ASN A 566 O ARG A 571 SHEET 3 E 3 PHE A 583 GLU A 584 -1 O GLU A 584 N TYR A 565 SHEET 1 F 5 ALA B 256 LYS B 258 0 SHEET 2 F 5 ALA B 325 TYR B 330 1 O MET B 329 N LEU B 257 SHEET 3 F 5 ARG B 333 GLU B 345 -1 O LEU B 338 N PHE B 326 SHEET 4 F 5 TRP B 375 VAL B 383 -1 O ASP B 380 N ARG B 339 SHEET 5 F 5 LEU B 310 ALA B 312 -1 N LEU B 310 O ILE B 377 SHEET 1 G 2 CYS B 295 LEU B 296 0 SHEET 2 G 2 ILE B 302 ASN B 303 -1 O ILE B 302 N LEU B 296 SHEET 1 H 5 THR B 486 VAL B 488 0 SHEET 2 H 5 PRO B 447 PRO B 453 1 N LEU B 449 O VAL B 487 SHEET 3 H 5 ALA B 414 LEU B 420 1 N PHE B 416 O LEU B 450 SHEET 4 H 5 PHE B 517 VAL B 520 1 O ILE B 519 N ALA B 417 SHEET 5 H 5 GLU B 556 PRO B 559 1 O VAL B 558 N TYR B 518 SHEET 1 I 3 ARG B 571 TYR B 574 0 SHEET 2 I 3 ALA B 563 ASN B 566 -1 N ALA B 564 O ASP B 573 SHEET 3 I 3 PHE B 583 GLU B 584 -1 O GLU B 584 N TYR B 565 CISPEP 1 THR A 276 PRO A 277 0 2.05 CISPEP 2 THR B 276 PRO B 277 0 2.25 SITE 1 AC1 2 HIS A 314 ASP A 374 SITE 1 AC2 2 HIS B 314 ASP B 374 SITE 1 AC3 21 PHE A 418 GLN A 419 LEU A 420 ARG A 421 SITE 2 AC3 21 ASN A 422 HIS A 428 LEU A 431 MET A 495 SITE 3 AC3 21 VAL A 520 GLY A 521 ARG A 522 PRO A 524 SITE 4 AC3 21 ALA A 525 ARG A 561 VAL A 562 ALA A 563 SITE 5 AC3 21 HOH A1073 HOH A1098 HOH A1100 HOH A1188 SITE 6 AC3 21 HOH A1235 SITE 1 AC4 20 PHE B 418 GLN B 419 LEU B 420 ARG B 421 SITE 2 AC4 20 ASN B 422 HIS B 428 LEU B 431 MET B 495 SITE 3 AC4 20 VAL B 520 GLY B 521 ARG B 522 PRO B 524 SITE 4 AC4 20 ALA B 525 ARG B 561 VAL B 562 ALA B 563 SITE 5 AC4 20 HOH B1018 HOH B1046 HOH B1049 HOH B1068 CRYST1 63.100 99.900 75.900 90.00 113.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015848 0.000000 0.006727 0.00000 SCALE2 0.000000 0.010010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014313 0.00000