HEADER TRANSFERASE 11-JUL-07 2QKQ TITLE STRUCTURE OF THE SAM DOMAIN OF HUMAN EPHRIN TYPE-B RECEPTOR 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SAM (STERILE ALPHA MOTIF) DOMAIN; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR HTK, TYROSINE-PROTEIN COMPND 6 KINASE TYRO11; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHB4, HTK, TYRO11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS ATP-BINDING, GLYCOPROTEIN, KINASE, MEMBRANE, NUCLEOTIDE-BINDING, KEYWDS 2 PHOSPHORYLATION, RECEPTOR, TRANSFERASE, TRANSMEMBRANE, TYROSINE- KEYWDS 3 PROTEIN KINASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 4 SGC EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,D.CUERRIER,C.BUTLER-COLE,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 4 30-AUG-23 2QKQ 1 REMARK SEQADV REVDAT 3 24-FEB-09 2QKQ 1 VERSN REVDAT 2 20-NOV-07 2QKQ 1 AUTHOR KEYWDS REVDAT 1 24-JUL-07 2QKQ 0 JRNL AUTH J.R.WALKER,D.CUERRIER,C.BUTLER-COLE,J.WEIGELT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL SAM DOMAIN OF HUMAN EPHRIN TYPE-B RECEPTOR 4 (EPHB4) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 7859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : 1.25000 REMARK 3 B33 (A**2) : -2.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.755 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 967 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1300 ; 1.006 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 126 ; 4.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 41 ;38.574 ;23.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 167 ;17.196 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 141 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 726 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 400 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 689 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 39 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 630 ; 0.320 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 962 ; 0.525 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 386 ; 0.984 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 338 ; 1.389 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 908 A 914 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4130 8.6990 9.8531 REMARK 3 T TENSOR REMARK 3 T11: -0.1650 T22: 0.2949 REMARK 3 T33: 0.3231 T12: -0.1176 REMARK 3 T13: -0.0903 T23: 0.1851 REMARK 3 L TENSOR REMARK 3 L11: 11.6657 L22: 53.6231 REMARK 3 L33: 64.7216 L12: 5.1510 REMARK 3 L13: -9.2796 L23: 8.6690 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: -1.8960 S13: -1.3626 REMARK 3 S21: 1.0737 S22: -0.5018 S23: -2.9897 REMARK 3 S31: 0.6109 S32: 3.2468 S33: 0.4233 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 915 A 924 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6508 12.1483 5.0382 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: -0.0989 REMARK 3 T33: 0.0102 T12: -0.1252 REMARK 3 T13: 0.0110 T23: 0.0869 REMARK 3 L TENSOR REMARK 3 L11: 32.7050 L22: 3.1552 REMARK 3 L33: 7.2666 L12: 3.1195 REMARK 3 L13: -1.5469 L23: 2.0634 REMARK 3 S TENSOR REMARK 3 S11: -0.9195 S12: 0.3983 S13: 0.6303 REMARK 3 S21: -0.2325 S22: 0.4192 S23: -0.3095 REMARK 3 S31: -1.2323 S32: 0.2872 S33: 0.5004 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 925 A 929 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1973 10.1300 12.6215 REMARK 3 T TENSOR REMARK 3 T11: -0.1150 T22: -0.0322 REMARK 3 T33: 0.0150 T12: 0.0013 REMARK 3 T13: -0.0317 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 34.6852 L22: 4.5455 REMARK 3 L33: 48.9946 L12: 8.6374 REMARK 3 L13: -5.8410 L23: 9.2678 REMARK 3 S TENSOR REMARK 3 S11: -0.4493 S12: -1.2288 S13: 1.9244 REMARK 3 S21: -0.0666 S22: -0.0919 S23: 0.2239 REMARK 3 S31: -1.1353 S32: -0.1498 S33: 0.5412 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 930 A 941 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1849 -0.0844 12.3288 REMARK 3 T TENSOR REMARK 3 T11: -0.0274 T22: 0.1242 REMARK 3 T33: 0.2063 T12: 0.1222 REMARK 3 T13: 0.1074 T23: 0.2092 REMARK 3 L TENSOR REMARK 3 L11: 5.2751 L22: 11.6592 REMARK 3 L33: 9.3455 L12: -3.7764 REMARK 3 L13: -4.6132 L23: 0.7642 REMARK 3 S TENSOR REMARK 3 S11: -0.6491 S12: -1.1047 S13: -1.0301 REMARK 3 S21: 0.0916 S22: 0.0411 S23: -0.6659 REMARK 3 S31: 0.6469 S32: 0.9693 S33: 0.6080 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 942 A 953 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9133 2.5169 6.4426 REMARK 3 T TENSOR REMARK 3 T11: -0.1080 T22: 0.0905 REMARK 3 T33: -0.0090 T12: -0.0434 REMARK 3 T13: 0.0118 T23: 0.1104 REMARK 3 L TENSOR REMARK 3 L11: 20.1835 L22: 18.3824 REMARK 3 L33: 7.5616 L12: -2.8895 REMARK 3 L13: -2.2369 L23: -0.4886 REMARK 3 S TENSOR REMARK 3 S11: -0.3907 S12: -1.0795 S13: -1.2240 REMARK 3 S21: 0.0654 S22: 0.4549 S23: 0.5044 REMARK 3 S31: 0.2802 S32: -0.9457 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 954 A 959 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9080 7.0748 -1.8322 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1080 REMARK 3 T33: -0.1546 T12: 0.1131 REMARK 3 T13: -0.0167 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 35.8803 L22: 19.6534 REMARK 3 L33: 11.5798 L12: -21.7475 REMARK 3 L13: 0.5231 L23: 8.3371 REMARK 3 S TENSOR REMARK 3 S11: -0.5228 S12: 2.0282 S13: -1.4526 REMARK 3 S21: -1.7121 S22: -0.5894 S23: 0.8422 REMARK 3 S31: -1.9738 S32: 0.3222 S33: 1.1122 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 960 A 968 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6675 2.3120 0.0203 REMARK 3 T TENSOR REMARK 3 T11: -0.0039 T22: 0.1562 REMARK 3 T33: 0.2456 T12: 0.0063 REMARK 3 T13: 0.2738 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 24.2593 L22: 27.8510 REMARK 3 L33: 35.7654 L12: 13.7175 REMARK 3 L13: 9.5839 L23: 13.9589 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: 0.7965 S13: -1.7152 REMARK 3 S21: -1.2909 S22: 0.4542 S23: -3.1911 REMARK 3 S31: 0.9574 S32: 1.9350 S33: -0.4032 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 908 B 914 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1708 13.3680 0.8251 REMARK 3 T TENSOR REMARK 3 T11: 0.2602 T22: -0.1700 REMARK 3 T33: 0.3385 T12: -0.1242 REMARK 3 T13: 0.1390 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 29.1603 L22: 17.8778 REMARK 3 L33: 44.2767 L12: 21.5034 REMARK 3 L13: 1.1457 L23: 10.2989 REMARK 3 S TENSOR REMARK 3 S11: -0.8512 S12: 0.1798 S13: -2.2754 REMARK 3 S21: -0.7363 S22: 0.3021 S23: -0.9849 REMARK 3 S31: 2.3640 S32: 0.6370 S33: 0.5491 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 915 B 923 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4948 20.2049 5.9953 REMARK 3 T TENSOR REMARK 3 T11: -0.0771 T22: 0.0676 REMARK 3 T33: 0.0291 T12: -0.1492 REMARK 3 T13: 0.0995 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 4.3361 L22: 18.7569 REMARK 3 L33: 11.9175 L12: 2.8832 REMARK 3 L13: 6.1244 L23: -3.3451 REMARK 3 S TENSOR REMARK 3 S11: 0.2170 S12: -0.7575 S13: 0.0983 REMARK 3 S21: -0.0413 S22: -0.3705 S23: 0.3795 REMARK 3 S31: 0.3250 S32: -1.4686 S33: 0.1535 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 924 B 930 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1727 26.0133 -1.4494 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: -0.0294 REMARK 3 T33: -0.0479 T12: -0.0484 REMARK 3 T13: -0.0217 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 2.6954 L22: 11.3553 REMARK 3 L33: 29.8342 L12: -5.0894 REMARK 3 L13: -0.2971 L23: -6.6516 REMARK 3 S TENSOR REMARK 3 S11: 0.3770 S12: -0.0751 S13: -0.1322 REMARK 3 S21: -1.2326 S22: -0.2941 S23: 0.8294 REMARK 3 S31: -0.2149 S32: -1.3028 S33: -0.0829 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 931 B 940 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1961 20.3214 -1.5316 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: -0.0567 REMARK 3 T33: 0.2252 T12: 0.0813 REMARK 3 T13: 0.2325 T23: 0.1078 REMARK 3 L TENSOR REMARK 3 L11: 19.9525 L22: 3.9504 REMARK 3 L33: 19.0439 L12: -7.9925 REMARK 3 L13: 7.1368 L23: -2.6426 REMARK 3 S TENSOR REMARK 3 S11: -0.5944 S12: 0.2059 S13: -1.6151 REMARK 3 S21: -0.9494 S22: -0.3086 S23: -1.4594 REMARK 3 S31: 0.8611 S32: 0.8386 S33: 0.9030 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 941 B 946 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9347 27.6023 4.2754 REMARK 3 T TENSOR REMARK 3 T11: 0.0079 T22: 0.0014 REMARK 3 T33: 0.1447 T12: -0.0860 REMARK 3 T13: 0.1154 T23: 0.0867 REMARK 3 L TENSOR REMARK 3 L11: 27.8334 L22: 26.6574 REMARK 3 L33: 8.7095 L12: -18.6894 REMARK 3 L13: -4.8605 L23: -3.4750 REMARK 3 S TENSOR REMARK 3 S11: 1.1360 S12: -0.2757 S13: 0.8603 REMARK 3 S21: -0.9275 S22: -0.5467 S23: -1.4601 REMARK 3 S31: -0.2169 S32: 1.4382 S33: -0.5893 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 947 B 962 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9570 29.0310 8.5249 REMARK 3 T TENSOR REMARK 3 T11: -0.0740 T22: -0.0821 REMARK 3 T33: -0.1261 T12: -0.0106 REMARK 3 T13: 0.0048 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 9.1597 L22: 25.1199 REMARK 3 L33: 15.0256 L12: -2.7059 REMARK 3 L13: 1.7373 L23: 0.8120 REMARK 3 S TENSOR REMARK 3 S11: -0.3409 S12: -0.6156 S13: 0.2593 REMARK 3 S21: 0.4837 S22: -0.0383 S23: -0.3946 REMARK 3 S31: -0.3952 S32: -0.6008 S33: 0.3792 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 963 B 968 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4022 17.0819 10.9830 REMARK 3 T TENSOR REMARK 3 T11: 0.3416 T22: 0.6893 REMARK 3 T33: 0.4632 T12: -0.0399 REMARK 3 T13: -0.1643 T23: 0.2064 REMARK 3 L TENSOR REMARK 3 L11: 10.8478 L22: 75.9765 REMARK 3 L33: 1.8419 L12: 4.1926 REMARK 3 L13: 4.4648 L23: 1.1636 REMARK 3 S TENSOR REMARK 3 S11: 0.4131 S12: -1.7633 S13: -2.5831 REMARK 3 S21: 2.2895 S22: 0.7063 S23: -4.0742 REMARK 3 S31: 3.6112 S32: 2.9355 S33: -1.1193 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2QKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8210 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.73000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1F0M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3 M NAKPO4, PH 6.4, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.83950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.83950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 895 REMARK 465 HIS A 896 REMARK 465 PRO A 897 REMARK 465 LEU A 898 REMARK 465 LEU A 899 REMARK 465 ASP A 900 REMARK 465 GLN A 901 REMARK 465 ARG A 902 REMARK 465 GLN A 903 REMARK 465 PRO A 904 REMARK 465 HIS A 905 REMARK 465 TYR A 906 REMARK 465 SER A 907 REMARK 465 LYS A 969 REMARK 465 SER A 970 REMARK 465 GLN A 971 REMARK 465 ALA A 972 REMARK 465 LYS A 973 REMARK 465 PRO A 974 REMARK 465 GLY A 975 REMARK 465 THR A 976 REMARK 465 PRO A 977 REMARK 465 GLY B 895 REMARK 465 HIS B 896 REMARK 465 PRO B 897 REMARK 465 LEU B 898 REMARK 465 LEU B 899 REMARK 465 ASP B 900 REMARK 465 GLN B 901 REMARK 465 ARG B 902 REMARK 465 GLN B 903 REMARK 465 PRO B 904 REMARK 465 HIS B 905 REMARK 465 TYR B 906 REMARK 465 SER B 907 REMARK 465 LYS B 969 REMARK 465 SER B 970 REMARK 465 GLN B 971 REMARK 465 ALA B 972 REMARK 465 LYS B 973 REMARK 465 PRO B 974 REMARK 465 GLY B 975 REMARK 465 THR B 976 REMARK 465 PRO B 977 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 966 CD OE1 NE2 REMARK 470 MET B 968 CG SD CE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002342.2 RELATED DB: TARGETDB DBREF 2QKQ A 896 977 UNP P54760 EPHB4_HUMAN 896 977 DBREF 2QKQ B 896 977 UNP P54760 EPHB4_HUMAN 896 977 SEQADV 2QKQ GLY A 895 UNP P54760 EXPRESSION TAG SEQADV 2QKQ GLY B 895 UNP P54760 EXPRESSION TAG SEQRES 1 A 83 GLY HIS PRO LEU LEU ASP GLN ARG GLN PRO HIS TYR SER SEQRES 2 A 83 ALA PHE GLY SER VAL GLY GLU TRP LEU ARG ALA ILE LYS SEQRES 3 A 83 MET GLY ARG TYR GLU GLU SER PHE ALA ALA ALA GLY PHE SEQRES 4 A 83 GLY SER PHE GLU LEU VAL SER GLN ILE SER ALA GLU ASP SEQRES 5 A 83 LEU LEU ARG ILE GLY VAL THR LEU ALA GLY HIS GLN LYS SEQRES 6 A 83 LYS ILE LEU ALA SER VAL GLN HIS MET LYS SER GLN ALA SEQRES 7 A 83 LYS PRO GLY THR PRO SEQRES 1 B 83 GLY HIS PRO LEU LEU ASP GLN ARG GLN PRO HIS TYR SER SEQRES 2 B 83 ALA PHE GLY SER VAL GLY GLU TRP LEU ARG ALA ILE LYS SEQRES 3 B 83 MET GLY ARG TYR GLU GLU SER PHE ALA ALA ALA GLY PHE SEQRES 4 B 83 GLY SER PHE GLU LEU VAL SER GLN ILE SER ALA GLU ASP SEQRES 5 B 83 LEU LEU ARG ILE GLY VAL THR LEU ALA GLY HIS GLN LYS SEQRES 6 B 83 LYS ILE LEU ALA SER VAL GLN HIS MET LYS SER GLN ALA SEQRES 7 B 83 LYS PRO GLY THR PRO HET CL A 2 1 HET CL B 1 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *32(H2 O) HELIX 1 1 SER A 911 ILE A 919 1 9 HELIX 2 2 MET A 921 ARG A 923 5 3 HELIX 3 3 TYR A 924 ALA A 931 1 8 HELIX 4 4 SER A 935 SER A 940 1 6 HELIX 5 5 SER A 943 GLY A 951 1 9 HELIX 6 6 LEU A 954 GLN A 966 1 13 HELIX 7 7 SER B 911 ILE B 919 1 9 HELIX 8 8 MET B 921 ARG B 923 5 3 HELIX 9 9 TYR B 924 GLY B 932 1 9 HELIX 10 10 SER B 935 SER B 940 1 6 HELIX 11 11 SER B 943 GLY B 951 1 9 HELIX 12 12 LEU B 954 GLN B 966 1 13 SITE 1 AC1 1 ARG A 917 CRYST1 73.566 73.566 25.679 90.00 90.00 90.00 P 42 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.038942 0.00000