HEADER TRANSFERASE 11-JUL-07 2QKX TITLE N-ACETYL GLUCOSAMINE 1-PHOSPHATE URIDYLTRANSFERASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPLEX WITH N-ACETYL GLUCOSAMINE 1-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN GLMU; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: [INCLUDES: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE (EC COMPND 5 2.7.7.23) (N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE); COMPND 6 GLUCOSAMINE-1-PHOSPHATE N-ACETYLTRANSFERASE (EC 2.3.1.157)]; COMPND 7 EC: 2.3.1.157; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 STRAIN: H37RV; SOURCE 4 ATCC: 25618; SOURCE 5 GENE: GLMU, RV1018C, MT1046; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS ROSSMANN, BETA-HELIX, SUBSTRATE COMPLEX, STRUCTURAL GENOMICS, TB KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, TBSGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,C.J.SQUIRE,E.N.BAKER,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (TBSGC) REVDAT 6 30-AUG-23 2QKX 1 HETSYN REVDAT 5 29-JUL-20 2QKX 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 SITE ATOM REVDAT 4 13-JUL-11 2QKX 1 VERSN REVDAT 3 10-MAR-09 2QKX 1 JRNL REVDAT 2 24-FEB-09 2QKX 1 VERSN REVDAT 1 15-JUL-08 2QKX 0 JRNL AUTH Z.ZHANG,E.M.BULLOCH,R.D.BUNKER,E.N.BAKER,C.J.SQUIRE JRNL TITL STRUCTURE AND FUNCTION OF GLMU FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 275 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19237750 JRNL DOI 10.1107/S0907444909001036 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 0.97000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.847 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.785 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2852 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3907 ; 1.673 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 7.136 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;37.028 ;24.078 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;16.716 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.322 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2119 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1227 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1910 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1940 ; 0.631 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3081 ; 1.140 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 971 ; 1.611 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 826 ; 2.599 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8397 -14.4516 14.9037 REMARK 3 T TENSOR REMARK 3 T11: -0.0096 T22: 0.0153 REMARK 3 T33: 0.1409 T12: 0.0212 REMARK 3 T13: 0.0351 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.8554 L22: 1.4863 REMARK 3 L33: 2.3796 L12: -0.0067 REMARK 3 L13: -0.3531 L23: 0.6775 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: -0.2161 S13: 0.2638 REMARK 3 S21: 0.2726 S22: -0.0629 S23: 0.1780 REMARK 3 S31: -0.3672 S32: -0.2825 S33: -0.0086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13239 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 42.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM NITRATE, 20% PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.15150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.22293 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 96.01367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.15150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.22293 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 96.01367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.15150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.22293 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.01367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.15150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.22293 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.01367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.15150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.22293 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.01367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.15150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.22293 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.01367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.44586 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 192.02733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.44586 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 192.02733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.44586 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 192.02733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.44586 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 192.02733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.44586 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 192.02733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.44586 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 192.02733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED BY THE 3-FOLD REMARK 300 AXIS: -X+Y,-X,Z AND -Y,X-Y,Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 47.15150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -81.66879 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 94.30300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 HIS A 58 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 87 CG CD1 CD2 REMARK 470 SER A 98 OG REMARK 470 ARG A 131 CZ NH1 NH2 REMARK 470 HIS A 159 ND1 CD2 CE1 NE2 REMARK 470 GLU A 176 CD OE1 OE2 REMARK 470 LEU A 199 CG CD1 CD2 REMARK 470 SER A 200 OG REMARK 470 ASN A 203 CB CG OD1 ND2 REMARK 470 GLN A 206 CD OE1 NE2 REMARK 470 ILE A 214 CD1 REMARK 470 ARG A 218 NE CZ NH1 NH2 REMARK 470 ARG A 295 NE CZ NH1 NH2 REMARK 470 ARG A 301 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 302 CB CYS A 302 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 5 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 31 103.69 -163.98 REMARK 500 ALA A 48 65.90 63.01 REMARK 500 HIS A 58 -74.27 -7.49 REMARK 500 PRO A 65 -36.69 -39.74 REMARK 500 LEU A 87 30.39 -94.11 REMARK 500 SER A 98 -9.49 -51.48 REMARK 500 ASP A 158 27.24 -67.95 REMARK 500 HIS A 159 18.88 50.76 REMARK 500 ALA A 163 163.26 178.77 REMARK 500 ASN A 202 92.61 -69.13 REMARK 500 ASN A 203 138.50 89.13 REMARK 500 GLN A 206 73.60 37.63 REMARK 500 ASP A 283 12.77 59.96 REMARK 500 THR A 296 123.65 -33.86 REMARK 500 ARG A 323 51.27 39.08 REMARK 500 SER A 328 60.25 39.90 REMARK 500 TYR A 386 39.12 38.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 2QKX A 1 389 UNP P96382 GLMU_MYCTU 1 389 SEQADV 2QKX GLY A -1 UNP P96382 EXPRESSION TAG SEQADV 2QKX SER A 0 UNP P96382 EXPRESSION TAG SEQRES 1 A 391 GLY SER MET THR PHE PRO GLY ASP THR ALA VAL LEU VAL SEQRES 2 A 391 LEU ALA ALA GLY PRO GLY THR ARG MET ARG SER ASP THR SEQRES 3 A 391 PRO LYS VAL LEU HIS THR LEU ALA GLY ARG SER MET LEU SEQRES 4 A 391 SER HIS VAL LEU HIS ALA ILE ALA LYS LEU ALA PRO GLN SEQRES 5 A 391 ARG LEU ILE VAL VAL LEU GLY HIS ASP HIS GLN ARG ILE SEQRES 6 A 391 ALA PRO LEU VAL GLY GLU LEU ALA ASP THR LEU GLY ARG SEQRES 7 A 391 THR ILE ASP VAL ALA LEU GLN ASP ARG PRO LEU GLY THR SEQRES 8 A 391 GLY HIS ALA VAL LEU CYS GLY LEU SER ALA LEU PRO ASP SEQRES 9 A 391 ASP TYR ALA GLY ASN VAL VAL VAL THR SER GLY ASP THR SEQRES 10 A 391 PRO LEU LEU ASP ALA ASP THR LEU ALA ASP LEU ILE ALA SEQRES 11 A 391 THR HIS ARG ALA VAL SER ALA ALA VAL THR VAL LEU THR SEQRES 12 A 391 THR THR LEU ASP ASP PRO PHE GLY TYR GLY ARG ILE LEU SEQRES 13 A 391 ARG THR GLN ASP HIS GLU VAL MET ALA ILE VAL GLU GLN SEQRES 14 A 391 THR ASP ALA THR PRO SER GLN ARG GLU ILE ARG GLU VAL SEQRES 15 A 391 ASN ALA GLY VAL TYR ALA PHE ASP ILE ALA ALA LEU ARG SEQRES 16 A 391 SER ALA LEU SER ARG LEU SER SER ASN ASN ALA GLN GLN SEQRES 17 A 391 GLU LEU TYR LEU THR ASP VAL ILE ALA ILE LEU ARG SER SEQRES 18 A 391 ASP GLY GLN THR VAL HIS ALA SER HIS VAL ASP ASP SER SEQRES 19 A 391 ALA LEU VAL ALA GLY VAL ASN ASN ARG VAL GLN LEU ALA SEQRES 20 A 391 GLU LEU ALA SER GLU LEU ASN ARG ARG VAL VAL ALA ALA SEQRES 21 A 391 HIS GLN LEU ALA GLY VAL THR VAL VAL ASP PRO ALA THR SEQRES 22 A 391 THR TRP ILE ASP VAL ASP VAL THR ILE GLY ARG ASP THR SEQRES 23 A 391 VAL ILE HIS PRO GLY THR GLN LEU LEU GLY ARG THR GLN SEQRES 24 A 391 ILE GLY GLY ARG CYS VAL VAL GLY PRO ASP THR THR LEU SEQRES 25 A 391 THR ASP VAL ALA VAL GLY ASP GLY ALA SER VAL VAL ARG SEQRES 26 A 391 THR HIS GLY SER SER SER SER ILE GLY ASP GLY ALA ALA SEQRES 27 A 391 VAL GLY PRO PHE THR TYR LEU ARG PRO GLY THR ALA LEU SEQRES 28 A 391 GLY ALA ASP GLY LYS LEU GLY ALA PHE VAL GLU VAL LYS SEQRES 29 A 391 ASN SER THR ILE GLY THR GLY THR LYS VAL PRO HIS LEU SEQRES 30 A 391 THR TYR VAL GLY ASP ALA ASP ILE GLY GLU TYR SER ASN SEQRES 31 A 391 ILE HET GN1 A 401 19 HETNAM GN1 2-ACETAMIDO-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETSYN GN1 2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D- HETSYN 2 GN1 GLUCOPYRANOSE; N-ACETYL-D-GLUCOSAMINE-1-PHOSPHATE; N- HETSYN 3 GN1 ACETYL-1-O-PHOSPHONO-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO- HETSYN 4 GN1 2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOSE; 2-ACETAMIDO-2- HETSYN 5 GN1 DEOXY-1-O-PHOSPHONO-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-1- HETSYN 6 GN1 O-PHOSPHONO-GLUCOSE FORMUL 2 GN1 C8 H16 N O9 P FORMUL 3 HOH *39(H2 O) HELIX 1 1 GLY A 17 ARG A 21 5 5 HELIX 2 2 PRO A 25 LEU A 28 5 4 HELIX 3 3 MET A 36 ALA A 48 1 13 HELIX 4 4 ASP A 59 LEU A 74 1 16 HELIX 5 5 GLY A 88 SER A 98 1 11 HELIX 6 6 ASP A 119 VAL A 133 1 15 HELIX 7 7 ASP A 188 ARG A 198 1 11 HELIX 8 8 ASP A 212 GLY A 221 1 10 HELIX 9 9 ASP A 231 ALA A 236 5 6 HELIX 10 10 ASN A 240 ALA A 262 1 23 HELIX 11 11 ASP A 268 ALA A 270 5 3 CISPEP 1 PRO A 4 GLY A 5 0 -25.79 CISPEP 2 ASN A 203 ALA A 204 0 -18.93 CISPEP 3 GLY A 305 PRO A 306 0 1.08 CISPEP 4 GLY A 338 PRO A 339 0 2.60 CRYST1 94.303 94.303 288.041 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010604 0.006122 0.000000 0.00000 SCALE2 0.000000 0.012245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003472 0.00000