HEADER HYDROLASE 13-JUL-07 2QLT TITLE CRYSTAL STRUCTURE OF AN ISOFORM OF DL-GLYCEROL-3-PHOSPHATASE, RHR2P, TITLE 2 FROM SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: (DL)-GLYCEROL-3-PHOSPHATASE 1; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GPP1, RHR2, YIL053W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS APC7326, DL-GLYCEROL-3-PHOSPHATASE ISOFORM, RHR2P, SACCHAROMYCES KEYWDS 2 CEREVISIAE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 21-FEB-24 2QLT 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2QLT 1 VERSN REVDAT 3 24-FEB-09 2QLT 1 VERSN REVDAT 2 04-DEC-07 2QLT 1 AUTHOR JRNL REVDAT 1 07-AUG-07 2QLT 0 JRNL AUTH K.TAN,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF AN ISOFORM OF JRNL TITL 2 DL-GLYCEROL-3-PHOSPHATASE, RHR2P FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1483 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1930 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2106 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2867 ; 1.549 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 265 ; 5.858 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;34.515 ;25.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;13.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.208 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1597 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1023 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1426 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 184 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.272 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.240 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1303 ; 0.882 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2068 ; 1.363 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 908 ; 2.526 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 791 ; 3.915 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3060 30.2140 13.4800 REMARK 3 T TENSOR REMARK 3 T11: -0.0870 T22: 0.0677 REMARK 3 T33: -0.0558 T12: -0.0077 REMARK 3 T13: -0.0104 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1771 L22: 0.4610 REMARK 3 L33: 0.4597 L12: -0.0705 REMARK 3 L13: -0.1157 L23: 0.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0193 S13: -0.0100 REMARK 3 S21: -0.0117 S22: 0.0020 S23: 0.0189 REMARK 3 S31: 0.0057 S32: -0.0047 S33: -0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00932 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29314 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 22.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.6M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.81800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.87400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.78900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.87400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.81800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.78900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS EXPERIMENTALLY UNKNOWN. REMARK 300 THE BIOLOGICAL UNIT ASSEMBLY SHOWN IN REMARK 350 IS REMARK 300 PREDICTED BY THE ANALYSIS OF PROTEIN INTERFACES BASED REMARK 300 ON THIS CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 4 REMARK 465 ASN A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 LYS A 8 REMARK 465 TYR A 9 REMARK 465 ILE A 10 REMARK 465 ARG A 11 REMARK 465 THR A 12 REMARK 465 THR A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 ASN A 16 REMARK 465 ILE A 17 REMARK 465 GLN A 18 REMARK 465 THR A 19 REMARK 465 ILE A 20 REMARK 465 GLY A 272 REMARK 465 SER A 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 31 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 87 62.57 -157.23 REMARK 500 THR A 220 -73.49 -96.48 REMARK 500 ASN A 238 -172.64 -170.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 278 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 39 OD1 REMARK 620 2 ASP A 39 OD2 51.2 REMARK 620 3 ASP A 41 O 104.8 83.5 REMARK 620 4 ASP A 200 OD1 120.7 73.6 86.3 REMARK 620 5 SO4 A 280 O1 73.0 120.4 93.4 165.9 REMARK 620 6 HOH A 500 O 158.8 149.8 81.2 79.6 86.5 REMARK 620 7 HOH A 501 O 74.1 94.6 178.1 92.9 87.8 100.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 277 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 72 ND1 REMARK 620 2 HIS A 75 NE2 121.6 REMARK 620 3 HOH A 449 O 111.2 84.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 275 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 117 O REMARK 620 2 CYS A 121 SG 94.3 REMARK 620 3 CYS A 121 N 55.1 75.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 276 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 178 NH1 REMARK 620 2 ARG A 178 NE 43.6 REMARK 620 3 ALA A 211 O 82.5 85.8 REMARK 620 4 GLY A 212 O 65.8 109.1 79.1 REMARK 620 5 CYS A 213 N 103.9 143.6 71.5 40.1 REMARK 620 6 CYS A 213 SG 171.7 140.3 104.4 110.5 74.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 274 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 227 O REMARK 620 2 LYS A 230 O 76.0 REMARK 620 3 CYS A 232 N 107.8 57.5 REMARK 620 4 CYS A 232 O 159.6 85.9 53.3 REMARK 620 5 CYS A 232 SG 76.1 94.7 58.7 96.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 285 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7326 RELATED DB: TARGETDB DBREF 2QLT A 22 271 UNP P41277 GPP1_YEAST 1 250 SEQADV 2QLT GLY A -1 UNP P41277 CLONING ARTIFACT SEQADV 2QLT HIS A 0 UNP P41277 CLONING ARTIFACT SEQADV 2QLT MET A 1 UNP P41277 CLONING ARTIFACT SEQADV 2QLT LYS A 2 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ARG A 3 UNP P41277 CLONING ARTIFACT SEQADV 2QLT PHE A 4 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ASN A 5 UNP P41277 CLONING ARTIFACT SEQADV 2QLT VAL A 6 UNP P41277 CLONING ARTIFACT SEQADV 2QLT LEU A 7 UNP P41277 CLONING ARTIFACT SEQADV 2QLT LYS A 8 UNP P41277 CLONING ARTIFACT SEQADV 2QLT TYR A 9 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ILE A 10 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ARG A 11 UNP P41277 CLONING ARTIFACT SEQADV 2QLT THR A 12 UNP P41277 CLONING ARTIFACT SEQADV 2QLT THR A 13 UNP P41277 CLONING ARTIFACT SEQADV 2QLT LYS A 14 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ALA A 15 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ASN A 16 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ILE A 17 UNP P41277 CLONING ARTIFACT SEQADV 2QLT GLN A 18 UNP P41277 CLONING ARTIFACT SEQADV 2QLT THR A 19 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ILE A 20 UNP P41277 CLONING ARTIFACT SEQADV 2QLT ALA A 21 UNP P41277 CLONING ARTIFACT SEQADV 2QLT GLY A 272 UNP P41277 CLONING ARTIFACT SEQADV 2QLT SER A 273 UNP P41277 CLONING ARTIFACT SEQRES 1 A 275 GLY HIS MET LYS ARG PHE ASN VAL LEU LYS TYR ILE ARG SEQRES 2 A 275 THR THR LYS ALA ASN ILE GLN THR ILE ALA MET PRO LEU SEQRES 3 A 275 THR THR LYS PRO LEU SER LEU LYS ILE ASN ALA ALA LEU SEQRES 4 A 275 PHE ASP VAL ASP GLY THR ILE ILE ILE SER GLN PRO ALA SEQRES 5 A 275 ILE ALA ALA PHE TRP ARG ASP PHE GLY LYS ASP LYS PRO SEQRES 6 A 275 TYR PHE ASP ALA GLU HIS VAL ILE HIS ILE SER HIS GLY SEQRES 7 A 275 TRP ARG THR TYR ASP ALA ILE ALA LYS PHE ALA PRO ASP SEQRES 8 A 275 PHE ALA ASP GLU GLU TYR VAL ASN LYS LEU GLU GLY GLU SEQRES 9 A 275 ILE PRO GLU LYS TYR GLY GLU HIS SER ILE GLU VAL PRO SEQRES 10 A 275 GLY ALA VAL LYS LEU CYS ASN ALA LEU ASN ALA LEU PRO SEQRES 11 A 275 LYS GLU LYS TRP ALA VAL ALA THR SER GLY THR ARG ASP SEQRES 12 A 275 MET ALA LYS LYS TRP PHE ASP ILE LEU LYS ILE LYS ARG SEQRES 13 A 275 PRO GLU TYR PHE ILE THR ALA ASN ASP VAL LYS GLN GLY SEQRES 14 A 275 LYS PRO HIS PRO GLU PRO TYR LEU LYS GLY ARG ASN GLY SEQRES 15 A 275 LEU GLY PHE PRO ILE ASN GLU GLN ASP PRO SER LYS SER SEQRES 16 A 275 LYS VAL VAL VAL PHE GLU ASP ALA PRO ALA GLY ILE ALA SEQRES 17 A 275 ALA GLY LYS ALA ALA GLY CYS LYS ILE VAL GLY ILE ALA SEQRES 18 A 275 THR THR PHE ASP LEU ASP PHE LEU LYS GLU LYS GLY CYS SEQRES 19 A 275 ASP ILE ILE VAL LYS ASN HIS GLU SER ILE ARG VAL GLY SEQRES 20 A 275 GLU TYR ASN ALA GLU THR ASP GLU VAL GLU LEU ILE PHE SEQRES 21 A 275 ASP ASP TYR LEU TYR ALA LYS ASP ASP LEU LEU LYS TRP SEQRES 22 A 275 GLY SER HET HG A 274 2 HET HG A 275 2 HET HG A 276 1 HET HG A 277 1 HET CA A 278 1 HET CL A 279 1 HET SO4 A 280 5 HET SO4 A 281 5 HET SO4 A 282 5 HET SO4 A 283 5 HET EDO A 284 4 HET EDO A 285 4 HETNAM HG MERCURY (II) ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HG 4(HG 2+) FORMUL 6 CA CA 2+ FORMUL 7 CL CL 1- FORMUL 8 SO4 4(O4 S 2-) FORMUL 12 EDO 2(C2 H6 O2) FORMUL 14 HOH *248(H2 O) HELIX 1 1 SER A 47 LYS A 60 1 14 HELIX 2 2 ASP A 66 SER A 74 1 9 HELIX 3 3 ARG A 78 ALA A 87 1 10 HELIX 4 4 PRO A 88 ALA A 91 5 4 HELIX 5 5 ASP A 92 GLU A 102 1 11 HELIX 6 6 GLU A 102 GLY A 108 1 7 HELIX 7 7 GLY A 116 ALA A 126 1 11 HELIX 8 8 PRO A 128 GLU A 130 5 3 HELIX 9 9 THR A 139 LYS A 151 1 13 HELIX 10 10 THR A 160 VAL A 164 5 5 HELIX 11 11 PRO A 171 LEU A 181 1 11 HELIX 12 12 ASP A 189 SER A 193 5 5 HELIX 13 13 ALA A 201 ALA A 211 1 11 HELIX 14 14 ASP A 223 LYS A 228 1 6 HELIX 15 15 ASN A 238 GLU A 240 5 3 SHEET 1 A 3 LEU A 29 ILE A 33 0 SHEET 2 A 3 VAL A 254 PHE A 258 -1 O LEU A 256 N LEU A 31 SHEET 3 A 3 ILE A 242 VAL A 244 -1 N ARG A 243 O ILE A 257 SHEET 1 B 7 PHE A 158 ILE A 159 0 SHEET 2 B 7 TRP A 132 ALA A 135 1 N VAL A 134 O ILE A 159 SHEET 3 B 7 ALA A 35 PHE A 38 1 N PHE A 38 O ALA A 135 SHEET 4 B 7 VAL A 195 GLU A 199 1 O VAL A 196 N LEU A 37 SHEET 5 B 7 LYS A 214 ILE A 218 1 O VAL A 216 N VAL A 197 SHEET 6 B 7 ILE A 234 VAL A 236 1 O ILE A 234 N GLY A 217 SHEET 7 B 7 TYR A 263 ALA A 264 -1 O TYR A 263 N ILE A 235 SHEET 1 C 2 ILE A 45 ILE A 46 0 SHEET 2 C 2 ILE A 112 GLU A 113 -1 O ILE A 112 N ILE A 46 LINK OD1 ASP A 39 CA CA A 278 1555 1555 2.68 LINK OD2 ASP A 39 CA CA A 278 1555 1555 2.33 LINK O ASP A 41 CA CA A 278 1555 1555 2.37 LINK ND1 HIS A 72 HG HG A 277 1555 1555 2.43 LINK NE2 HIS A 75 HG HG A 277 1555 1555 2.44 LINK O ALA A 117 HG A HG A 275 1555 1555 2.86 LINK SG CYS A 121 HG A HG A 275 1555 1555 2.23 LINK N CYS A 121 HG A HG A 275 1555 1555 3.30 LINK NH1 ARG A 178 HG HG A 276 1555 1555 1.80 LINK NE ARG A 178 HG HG A 276 1555 1555 3.25 LINK OD1 ASP A 200 CA CA A 278 1555 1555 2.23 LINK O ALA A 211 HG HG A 276 1555 1555 2.68 LINK O GLY A 212 HG HG A 276 1555 1555 3.41 LINK N CYS A 213 HG HG A 276 1555 1555 3.13 LINK SG CYS A 213 HG HG A 276 1555 1555 2.02 LINK O LEU A 227 HG A HG A 274 1555 1555 2.81 LINK O LYS A 230 HG A HG A 274 1555 1555 3.06 LINK N CYS A 232 HG A HG A 274 1555 1555 3.30 LINK O CYS A 232 HG A HG A 274 1555 1555 2.77 LINK SG CYS A 232 HG A HG A 274 1555 1555 2.45 LINK O CYS A 232 HG B HG A 274 1555 1555 3.37 LINK NE2 HIS A 239 HG B HG A 275 1555 1555 3.53 LINK HG HG A 277 O HOH A 449 1555 1555 2.97 LINK CA CA A 278 O1 SO4 A 280 1555 1555 2.31 LINK CA CA A 278 O HOH A 500 1555 1555 2.40 LINK CA CA A 278 O HOH A 501 1555 1555 2.47 CISPEP 1 LYS A 27 PRO A 28 0 -4.65 CISPEP 2 LYS A 168 PRO A 169 0 7.86 SITE 1 AC1 6 LEU A 227 LYS A 228 LYS A 230 CYS A 232 SITE 2 AC1 6 ILE A 235 CL A 279 SITE 1 AC2 4 PHE A 38 ALA A 117 CYS A 121 HIS A 239 SITE 1 AC3 4 ARG A 178 ALA A 211 GLY A 212 CYS A 213 SITE 1 AC4 3 HIS A 72 HIS A 75 HOH A 449 SITE 1 AC5 6 ASP A 39 ASP A 41 ASP A 200 SO4 A 280 SITE 2 AC5 6 HOH A 500 HOH A 501 SITE 1 AC6 6 CYS A 232 ASP A 233 ILE A 234 ILE A 235 SITE 2 AC6 6 TYR A 263 HG A 274 SITE 1 AC7 11 ASP A 39 VAL A 40 ASP A 41 GLY A 76 SITE 2 AC7 11 THR A 136 SER A 137 GLY A 138 LYS A 168 SITE 3 AC7 11 CA A 278 HOH A 438 HOH A 442 SITE 1 AC8 8 ARG A 56 PHE A 65 ALA A 67 GLU A 68 SITE 2 AC8 8 HOH A 301 HOH A 352 HOH A 432 HOH A 447 SITE 1 AC9 4 LYS A 60 LYS A 209 HOH A 460 HOH A 512 SITE 1 BC1 6 ALA A 52 ARG A 56 HIS A 72 GLN A 166 SITE 2 BC1 6 HIS A 170 HOH A 476 SITE 1 BC2 3 ARG A 140 LYS A 144 ARG A 154 SITE 1 BC3 5 LYS A 237 ASN A 238 HOH A 387 HOH A 444 SITE 2 BC3 5 HOH A 487 CRYST1 39.636 55.578 97.748 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025230 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010230 0.00000