HEADER TRANSCRIPTION REGULATOR 17-JUL-07 2QMV TITLE HIGH RESOLUTION STRUCTURE OF PEROXISONE PROLIFERATION-ACTIVATED TITLE 2 RECEPTOR GAMMA AND CHARACTERISATION OF ITS INTERACTION WITH THE CO- TITLE 3 ACTIVATOR TRANSCRIPTIONAL INTERMEDIARY FACTOR 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, RESIDUES 235-504; COMPND 5 SYNONYM: PPAR-GAMMA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS PEROXISOME PROFILERATION ACTIVATED RECEPTOR GAMMA, PPARG, KEYWDS 2 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2 (TIF2), PROTEIN STRUCTURE, KEYWDS 3 ACTIVATOR, DIABETES MELLITUS, DISEASE MUTATION, DNA-BINDING, METAL- KEYWDS 4 BINDING, NUCLEUS, OBESITY, PHOSPHORYLATION, TRANSCRIPTION KEYWDS 5 REGULATION, ZINC-FINGER, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 9 AUTHOR R.HARTL,H.RIEPL,S.KAUSCHKE,H.R.KALBITZER,T.MAURER REVDAT 4 01-MAY-24 2QMV 1 REMARK REVDAT 3 22-FEB-12 2QMV 1 JRNL VERSN REVDAT 2 24-FEB-09 2QMV 1 VERSN REVDAT 1 02-SEP-08 2QMV 0 JRNL AUTH D.MORAS,H.GRONEMEYER,V.L.GAAL,A.J.SCHEEN,T.-A.COCK, JRNL AUTH 2 S.M.HOUTEN,J.AUWERX,M.STUMVOLL,H.HAERING,J.UPPENBERG, JRNL AUTH 3 C.SVENSSON,M.JAKI,G.BERTILSSON,L.JENDEBERG,A.BERKENSTAM JRNL TITL HIGH RESOLUTION STRUCTURE OF PEROXISONE JRNL TITL 2 PROLIFERATION-ACTIVATED RECEPTOR GAMMA AND CHARACTERISATION JRNL TITL 3 OF ITS INTERACTION WITH THE CO-ACTIVATOR TRANSCRIPTIONAL JRNL TITL 4 INTERMEDIARY FACTOR 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, DYANA 1.5 REMARK 3 AUTHORS : GUENTERT P. (DYANA), GUENTERT P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 TOTAL OF 3017 RESTRAINTS, 2352 ARE NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 439 DIHEDRAL ANGLE RESTRAINTS,226 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 2QMV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000043797. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; CNH-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1024 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 HIS A 466 HD2 PRO A 467 1.22 REMARK 500 O ILE A 296 H ALA A 300 1.23 REMARK 500 O ALA A 371 H ASN A 375 1.30 REMARK 500 O ASP A 381 H ALA A 385 1.34 REMARK 500 O THR A 229 H ALA A 233 1.35 REMARK 500 O ILE A 281 H CYS A 285 1.37 REMARK 500 O VAL A 450 H GLN A 454 1.39 REMARK 500 O ILE A 392 H SER A 394 1.41 REMARK 500 O ALA A 278 H PHE A 282 1.41 REMARK 500 O ASN A 312 H THR A 316 1.42 REMARK 500 O TYR A 219 H ILE A 223 1.42 REMARK 500 O VAL A 315 H LYS A 319 1.43 REMARK 500 OD1 ASP A 380 H ASP A 383 1.46 REMARK 500 O ASN A 402 HD2 PRO A 405 1.48 REMARK 500 OD1 ASP A 383 HE21 GLN A 420 1.49 REMARK 500 O ASP A 411 HE21 GLN A 415 1.50 REMARK 500 OD1 ASN A 335 H ASP A 337 1.51 REMARK 500 O ALA A 292 H ILE A 296 1.54 REMARK 500 O ASP A 251 H LEU A 255 1.56 REMARK 500 HE ARG A 350 OE1 GLU A 365 1.57 REMARK 500 O PHE A 432 H LEU A 436 1.58 REMARK 500 HH TYR A 299 O ALA A 385 1.58 REMARK 500 O ILE A 296 H TYR A 299 1.58 REMARK 500 O LYS A 240 H ASP A 243 1.59 REMARK 500 O PRO A 405 H ILE A 409 1.59 REMARK 500 O ILE A 445 H HIS A 449 1.59 REMARK 500 O ALA A 235 N GLY A 239 1.98 REMARK 500 O VAL A 450 N GLN A 454 2.13 REMARK 500 O ILE A 296 N ALA A 300 2.16 REMARK 500 O ALA A 235 C GLY A 239 2.16 REMARK 500 O LEU A 317 N GLY A 321 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 208 -69.02 -19.66 REMARK 500 1 ALA A 209 -109.60 2.80 REMARK 500 1 LEU A 211 -77.03 -46.66 REMARK 500 1 ASP A 220 -76.51 -60.02 REMARK 500 1 ILE A 223 -6.36 -57.13 REMARK 500 1 SER A 225 -82.57 -65.80 REMARK 500 1 LEU A 228 109.38 -57.74 REMARK 500 1 THR A 238 -30.94 -173.54 REMARK 500 1 LYS A 240 -154.10 147.40 REMARK 500 1 ASP A 243 73.38 63.19 REMARK 500 1 LYS A 244 -53.47 -156.16 REMARK 500 1 SER A 245 152.80 158.61 REMARK 500 1 PHE A 247 77.10 -12.26 REMARK 500 1 TYR A 250 -28.16 166.09 REMARK 500 1 MET A 257 -3.43 -58.62 REMARK 500 1 LYS A 261 -77.27 -77.72 REMARK 500 1 LYS A 263 -81.29 -94.06 REMARK 500 1 PHE A 264 164.21 55.44 REMARK 500 1 LYS A 265 87.13 36.68 REMARK 500 1 HIS A 266 60.76 -160.31 REMARK 500 1 LEU A 270 -105.54 -88.60 REMARK 500 1 GLN A 271 -167.26 42.11 REMARK 500 1 GLU A 272 -70.74 67.69 REMARK 500 1 GLN A 273 71.29 -163.96 REMARK 500 1 LYS A 275 80.21 31.20 REMARK 500 1 ILE A 279 -36.18 -31.59 REMARK 500 1 LYS A 301 -1.86 -50.78 REMARK 500 1 PRO A 304 47.46 -74.95 REMARK 500 1 LEU A 309 -109.88 -69.91 REMARK 500 1 VAL A 322 -32.41 -37.16 REMARK 500 1 GLU A 324 -2.98 -58.86 REMARK 500 1 ILE A 325 -61.14 -93.92 REMARK 500 1 LEU A 333 31.94 -77.52 REMARK 500 1 SER A 342 -96.23 -36.27 REMARK 500 1 GLU A 343 -148.32 34.61 REMARK 500 1 GLN A 345 73.90 68.24 REMARK 500 1 PHE A 347 143.60 -178.03 REMARK 500 1 GLU A 351 -19.99 -46.81 REMARK 500 1 PHE A 352 -74.00 -89.14 REMARK 500 1 SER A 355 78.88 -51.28 REMARK 500 1 LEU A 356 -159.55 165.81 REMARK 500 1 ARG A 357 127.45 -29.95 REMARK 500 1 PRO A 359 -78.74 -75.02 REMARK 500 1 PHE A 360 -13.91 -45.70 REMARK 500 1 ASP A 362 58.57 178.15 REMARK 500 1 MET A 364 -42.08 -157.03 REMARK 500 1 ASN A 375 -15.01 -49.34 REMARK 500 1 ALA A 376 36.25 -88.75 REMARK 500 1 LEU A 377 2.36 -160.52 REMARK 500 1 LEU A 379 -111.27 -81.96 REMARK 500 REMARK 500 THIS ENTRY HAS 626 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2QMV A 207 476 UNP P37231 PPARG_HUMAN 235 504 SEQRES 1 A 270 GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR SEQRES 2 A 270 ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS SEQRES 3 A 270 ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER SEQRES 4 A 270 PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY SEQRES 5 A 270 GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN SEQRES 6 A 270 GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY SEQRES 7 A 270 CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR SEQRES 8 A 270 GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP SEQRES 9 A 270 LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS SEQRES 10 A 270 GLU ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS SEQRES 11 A 270 ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR SEQRES 12 A 270 ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP SEQRES 13 A 270 PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN SEQRES 14 A 270 ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE SEQRES 15 A 270 ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU SEQRES 16 A 270 ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU SEQRES 17 A 270 GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SEQRES 18 A 270 SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR SEQRES 19 A 270 ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU SEQRES 20 A 270 GLN VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS SEQRES 21 A 270 PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU HELIX 1 1 GLU A 207 PHE A 226 1 20 HELIX 2 2 THR A 229 LEU A 237 1 9 HELIX 3 3 LYS A 240 SER A 245 1 6 HELIX 4 4 ASP A 251 ASP A 260 1 10 HELIX 5 5 GLU A 276 LYS A 301 1 26 HELIX 6 6 ASP A 310 ALA A 331 1 22 HELIX 7 7 THR A 349 LYS A 354 1 6 HELIX 8 8 MET A 364 ASN A 375 1 12 HELIX 9 9 ALA A 376 GLU A 378 5 3 HELIX 10 10 ASP A 380 LEU A 393 1 14 HELIX 11 11 ASN A 402 HIS A 425 1 24 HELIX 12 12 GLN A 430 GLN A 437 1 8 HELIX 13 13 LYS A 438 LYS A 458 1 21 HELIX 14 14 HIS A 466 LYS A 474 1 9 SHEET 1 A 4 PHE A 247 ILE A 249 0 SHEET 2 A 4 GLY A 346 MET A 348 1 O PHE A 347 N ILE A 249 SHEET 3 A 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 A 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1