data_2QOJ # _entry.id 2QOJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QOJ pdb_00002qoj 10.2210/pdb2qoj/pdb NDB PD1029 ? ? RCSB RCSB043857 ? ? WWPDB D_1000043857 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1p8k _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2QOJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Scalley-Kim, M.' 1 ? 'McConnell Smith, A.' 2 ? 'Stoddard, B.L.' 3 ? # _citation.id primary _citation.title 'Coevolution of a homing endonuclease and its host target sequence.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 372 _citation.page_first 1305 _citation.page_last 1319 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17720189 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.07.052 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scalley-Kim, M.' 1 ? primary 'McConnell-Smith, A.' 2 ? primary 'Stoddard, B.L.' 3 ? # _cell.entry_id 2QOJ _cell.length_a 60.353 _cell.length_b 72.701 _cell.length_c 61.100 _cell.angle_alpha 90.00 _cell.angle_beta 103.88 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QOJ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'LAGLIDADG endonuclease' 29615.154 1 ? ? ? ? 2 polymer syn 'I-AniI DNA target seq1' 9609.168 1 ? ? ? ? 3 polymer syn 'I-AniI DNA target seq2' 9458.087 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 5 water nat water 18.015 46 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;GSDLTYAYLVGLFEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKKILGIGIVSFRKRNEIE(MSE)VALRIRDKNH LKSFILPIFEKYP(MSE)FSNKQYDYLRFRNALLSGIISLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFIEAEGCFS VYKLNKDDDYLIASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLGNKKLQYL LWLKQLRKISRYSEKIKIPSNY ; ;GSDLTYAYLVGLFEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKKILGIGIVSFRKRNEIEMVALRIRDKNHLKSF ILPIFEKYPMFSNKQYDYLRFRNALLSGIISLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFIEAEGCFSVYKLNKDD DYLIASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLGNKKLQYLLWLKQLRK ISRYSEKIKIPSNY ; Z ? 2 polydeoxyribonucleotide no no ;(DG)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DA)(DG)(DG)(DA)(DG)(DG)(DT)(DT)(DT)(DC)(DT)(DC) (DT)(DG)(DT)(DA)(DA)(DA)(DG)(DC)(DG)(DC)(DA) ; GCGCGCTGAGGAGGTTTCTCTGTAAAGCGCA X ? 3 polydeoxyribonucleotide no no ;(DG)(DC)(DG)(DC)(DT)(DT)(DT)(DA)(DC)(DA)(DG)(DA)(DG)(DA)(DA)(DA)(DC)(DC)(DT)(DC) (DC)(DT)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DC)(DT) ; GCGCTTTACAGAGAAACCTCCTCAGCGCGCT Y ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 LEU n 1 5 THR n 1 6 TYR n 1 7 ALA n 1 8 TYR n 1 9 LEU n 1 10 VAL n 1 11 GLY n 1 12 LEU n 1 13 PHE n 1 14 GLU n 1 15 GLY n 1 16 ASP n 1 17 GLY n 1 18 TYR n 1 19 PHE n 1 20 SER n 1 21 ILE n 1 22 THR n 1 23 LYS n 1 24 LYS n 1 25 GLY n 1 26 LYS n 1 27 TYR n 1 28 LEU n 1 29 THR n 1 30 TYR n 1 31 GLU n 1 32 LEU n 1 33 GLY n 1 34 ILE n 1 35 GLU n 1 36 LEU n 1 37 SER n 1 38 ILE n 1 39 LYS n 1 40 ASP n 1 41 VAL n 1 42 GLN n 1 43 LEU n 1 44 ILE n 1 45 TYR n 1 46 LYS n 1 47 ILE n 1 48 LYS n 1 49 LYS n 1 50 ILE n 1 51 LEU n 1 52 GLY n 1 53 ILE n 1 54 GLY n 1 55 ILE n 1 56 VAL n 1 57 SER n 1 58 PHE n 1 59 ARG n 1 60 LYS n 1 61 ARG n 1 62 ASN n 1 63 GLU n 1 64 ILE n 1 65 GLU n 1 66 MSE n 1 67 VAL n 1 68 ALA n 1 69 LEU n 1 70 ARG n 1 71 ILE n 1 72 ARG n 1 73 ASP n 1 74 LYS n 1 75 ASN n 1 76 HIS n 1 77 LEU n 1 78 LYS n 1 79 SER n 1 80 PHE n 1 81 ILE n 1 82 LEU n 1 83 PRO n 1 84 ILE n 1 85 PHE n 1 86 GLU n 1 87 LYS n 1 88 TYR n 1 89 PRO n 1 90 MSE n 1 91 PHE n 1 92 SER n 1 93 ASN n 1 94 LYS n 1 95 GLN n 1 96 TYR n 1 97 ASP n 1 98 TYR n 1 99 LEU n 1 100 ARG n 1 101 PHE n 1 102 ARG n 1 103 ASN n 1 104 ALA n 1 105 LEU n 1 106 LEU n 1 107 SER n 1 108 GLY n 1 109 ILE n 1 110 ILE n 1 111 SER n 1 112 LEU n 1 113 GLU n 1 114 ASP n 1 115 LEU n 1 116 PRO n 1 117 ASP n 1 118 TYR n 1 119 THR n 1 120 ARG n 1 121 SER n 1 122 ASP n 1 123 GLU n 1 124 PRO n 1 125 LEU n 1 126 ASN n 1 127 SER n 1 128 ILE n 1 129 GLU n 1 130 SER n 1 131 ILE n 1 132 ILE n 1 133 ASN n 1 134 THR n 1 135 SER n 1 136 TYR n 1 137 PHE n 1 138 SER n 1 139 ALA n 1 140 TRP n 1 141 LEU n 1 142 VAL n 1 143 GLY n 1 144 PHE n 1 145 ILE n 1 146 GLU n 1 147 ALA n 1 148 GLU n 1 149 GLY n 1 150 CYS n 1 151 PHE n 1 152 SER n 1 153 VAL n 1 154 TYR n 1 155 LYS n 1 156 LEU n 1 157 ASN n 1 158 LYS n 1 159 ASP n 1 160 ASP n 1 161 ASP n 1 162 TYR n 1 163 LEU n 1 164 ILE n 1 165 ALA n 1 166 SER n 1 167 PHE n 1 168 ASP n 1 169 ILE n 1 170 ALA n 1 171 GLN n 1 172 ARG n 1 173 ASP n 1 174 GLY n 1 175 ASP n 1 176 ILE n 1 177 LEU n 1 178 ILE n 1 179 SER n 1 180 ALA n 1 181 ILE n 1 182 ARG n 1 183 LYS n 1 184 TYR n 1 185 LEU n 1 186 SER n 1 187 PHE n 1 188 THR n 1 189 THR n 1 190 LYS n 1 191 VAL n 1 192 TYR n 1 193 LEU n 1 194 ASP n 1 195 LYS n 1 196 THR n 1 197 ASN n 1 198 CYS n 1 199 SER n 1 200 LYS n 1 201 LEU n 1 202 LYS n 1 203 VAL n 1 204 THR n 1 205 SER n 1 206 VAL n 1 207 ARG n 1 208 SER n 1 209 VAL n 1 210 GLU n 1 211 ASN n 1 212 ILE n 1 213 ILE n 1 214 LYS n 1 215 PHE n 1 216 LEU n 1 217 GLN n 1 218 ASN n 1 219 ALA n 1 220 PRO n 1 221 VAL n 1 222 LYS n 1 223 LEU n 1 224 LEU n 1 225 GLY n 1 226 ASN n 1 227 LYS n 1 228 LYS n 1 229 LEU n 1 230 GLN n 1 231 TYR n 1 232 LEU n 1 233 LEU n 1 234 TRP n 1 235 LEU n 1 236 LYS n 1 237 GLN n 1 238 LEU n 1 239 ARG n 1 240 LYS n 1 241 ILE n 1 242 SER n 1 243 ARG n 1 244 TYR n 1 245 SER n 1 246 GLU n 1 247 LYS n 1 248 ILE n 1 249 LYS n 1 250 ILE n 1 251 PRO n 1 252 SER n 1 253 ASN n 1 254 TYR n 2 1 DG n 2 2 DC n 2 3 DG n 2 4 DC n 2 5 DG n 2 6 DC n 2 7 DT n 2 8 DG n 2 9 DA n 2 10 DG n 2 11 DG n 2 12 DA n 2 13 DG n 2 14 DG n 2 15 DT n 2 16 DT n 2 17 DT n 2 18 DC n 2 19 DT n 2 20 DC n 2 21 DT n 2 22 DG n 2 23 DT n 2 24 DA n 2 25 DA n 2 26 DA n 2 27 DG n 2 28 DC n 2 29 DG n 2 30 DC n 2 31 DA n 3 1 DG n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DT n 3 6 DT n 3 7 DT n 3 8 DA n 3 9 DC n 3 10 DA n 3 11 DG n 3 12 DA n 3 13 DG n 3 14 DA n 3 15 DA n 3 16 DA n 3 17 DC n 3 18 DC n 3 19 DT n 3 20 DC n 3 21 DC n 3 22 DT n 3 23 DC n 3 24 DA n 3 25 DG n 3 26 DC n 3 27 DG n 3 28 DC n 3 29 DG n 3 30 DC n 3 31 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 254 _entity_src_gen.gene_src_common_name 'Aspergillus nidulans' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ANID_20006 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 227321 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 31 ? ? ? ? 3 1 sample 1 31 ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP H9D0N7_EMENI H9D0N7 ? 1 ;AGDLTYAYLVGLFEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKKILGIGIVSFRKRNEIEMVALRIRDKNHLKSF ILPIFEKYPMFSNKQYDYLRFRNALLSGIISLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFIEAEGCFSVYKLNKDD DYLIASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLGNKKLQYLLWLKQLRK ISRYSEKIKIPSNY ; 23 2 PDB 2QOJ 2QOJ ? 2 ? 1 3 PDB 2QOJ 2QOJ ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QOJ Z 1 ? 254 ? H9D0N7 23 ? 276 ? 1 254 2 2 2QOJ X 1 ? 31 ? 2QOJ 399 ? 429 ? 399 429 3 3 2QOJ Y 1 ? 31 ? 2QOJ 501 ? 531 ? 501 531 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QOJ GLY Z 1 ? UNP H9D0N7 ALA 23 conflict 1 1 1 2QOJ SER Z 2 ? UNP H9D0N7 GLY 24 conflict 2 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QOJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_percent_sol 53.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 5' # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-12-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength 0.9794 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2QOJ _reflns.observed_criterion_sigma_I 1.840 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.300 _reflns.d_resolution_high 2.400 _reflns.number_obs 20093 _reflns.number_all ? _reflns.percent_possible_obs 92.1 _reflns.pdbx_Rmerge_I_obs 0.03500 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.4000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.300 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.47 _reflns_shell.percent_possible_all 76.8 _reflns_shell.Rmerge_I_obs 0.14000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.700 _reflns_shell.pdbx_redundancy 2.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QOJ _refine.ls_number_reflns_obs 15421 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.30 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 92.1 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.276 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 778 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.922 _refine.correlation_coeff_Fo_to_Fc_free 0.870 _refine.B_iso_mean 29.85 _refine.aniso_B[1][1] 0.02000 _refine.aniso_B[2][2] 0.01000 _refine.aniso_B[3][3] -0.02000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.01000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.936 _refine.pdbx_overall_ESU_R_Free 0.353 _refine.overall_SU_ML 0.205 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.455 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2085 _refine_hist.pdbx_number_atoms_nucleic_acid 1210 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 3344 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 29.30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 3482 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.753 2.414 ? 4950 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.585 5.000 ? 253 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.126 23.696 ? 92 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.131 15.000 ? 414 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.992 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 557 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 2165 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.219 0.200 ? 1355 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.200 ? 2192 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.173 0.200 ? 146 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.004 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.234 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.669 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.772 1.500 ? 1307 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.236 2.000 ? 2049 'X-RAY DIFFRACTION' ? r_scbond_it 1.534 3.000 ? 2917 'X-RAY DIFFRACTION' ? r_scangle_it 2.364 4.500 ? 2901 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.47 _refine_ls_shell.number_reflns_R_work 1088 _refine_ls_shell.R_factor_R_work 0.2290 _refine_ls_shell.percent_reflns_obs 78.74 _refine_ls_shell.R_factor_R_free 0.3200 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 2QOJ _struct.title 'Coevolution of a homing endonuclease and its host target sequence' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QOJ _struct_keywords.pdbx_keywords hydrolase/DNA _struct_keywords.text ;LAGLIDADG homing endonuclease, I-AniI, Hydrolase, Intron homing, Mitochondrion, mRNA processing, mRNA splicing, hydrolase-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 4 ? ASP A 16 ? LEU Z 4 ASP Z 16 1 ? 13 HELX_P HELX_P2 2 ASP A 40 ? GLY A 52 ? ASP Z 40 GLY Z 52 1 ? 13 HELX_P HELX_P3 3 ASP A 73 ? TYR A 88 ? ASP Z 73 TYR Z 88 1 ? 16 HELX_P HELX_P4 4 ASN A 93 ? GLY A 108 ? ASN Z 93 GLY Z 108 1 ? 16 HELX_P HELX_P5 5 SER A 127 ? ASN A 133 ? SER Z 127 ASN Z 133 1 ? 7 HELX_P HELX_P6 6 TYR A 136 ? GLU A 148 ? TYR Z 136 GLU Z 148 1 ? 13 HELX_P HELX_P7 7 GLY A 174 ? LEU A 185 ? GLY Z 174 LEU Z 185 1 ? 12 HELX_P HELX_P8 8 SER A 205 ? ALA A 219 ? SER Z 205 ALA Z 219 1 ? 15 HELX_P HELX_P9 9 GLY A 225 ? ARG A 239 ? GLY Z 225 ARG Z 239 1 ? 15 HELX_P HELX_P10 10 ILE A 241 ? GLU A 246 ? ILE Z 241 GLU Z 246 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 65 C ? ? ? 1_555 A MSE 66 N ? ? Z GLU 65 Z MSE 66 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 66 C ? ? ? 1_555 A VAL 67 N ? ? Z MSE 66 Z VAL 67 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A PRO 89 C ? ? ? 1_555 A MSE 90 N ? ? Z PRO 89 Z MSE 90 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 90 C ? ? ? 1_555 A PHE 91 N ? ? Z MSE 90 Z PHE 91 1_555 ? ? ? ? ? ? ? 1.328 ? ? metalc1 metalc ? ? A GLY 15 O ? ? ? 1_555 F MG . MG ? ? Z GLY 15 Z MG 603 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc2 metalc ? ? A ALA 147 O ? ? ? 1_555 E MG . MG ? ? Z ALA 147 Z MG 602 1_555 ? ? ? ? ? ? ? 2.269 ? ? metalc3 metalc ? ? A GLU 148 OE2 ? ? ? 1_555 F MG . MG ? ? Z GLU 148 Z MG 603 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 C DA 16 "O3'" ? ? Z MG 601 Y DA 516 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 C DC 17 OP2 ? ? Z MG 601 Y DC 517 1_555 ? ? ? ? ? ? ? 2.028 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 B DT 19 OP2 ? ? Z MG 602 X DT 417 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 C DA 16 OP1 ? ? Z MG 602 Y DA 516 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc8 metalc ? ? F MG . MG ? ? ? 1_555 B DC 18 OP1 ? ? Z MG 603 X DC 416 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc9 metalc ? ? F MG . MG ? ? ? 1_555 C DC 17 OP2 ? ? Z MG 603 Y DC 517 1_555 ? ? ? ? ? ? ? 2.224 ? ? hydrog1 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 28 O2 ? ? X DG 401 Y DC 528 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 27 N1 ? ? X DC 402 Y DG 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 27 O6 ? ? X DC 402 Y DG 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 27 N2 ? ? X DC 402 Y DG 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 26 N3 ? ? X DG 403 Y DC 526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 26 O2 ? ? X DG 403 Y DC 526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 26 N4 ? ? X DG 403 Y DC 526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 25 N1 ? ? X DC 404 Y DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 25 O6 ? ? X DC 404 Y DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 25 N2 ? ? X DC 404 Y DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 24 N1 ? ? X DT 405 Y DA 524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 24 N6 ? ? X DT 405 Y DA 524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 23 N3 ? ? X DG 406 Y DC 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 23 O2 ? ? X DG 406 Y DC 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 23 N4 ? ? X DG 406 Y DC 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 22 N3 ? ? X DA 407 Y DT 522 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 22 O4 ? ? X DA 407 Y DT 522 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 21 N3 ? ? X DG 408 Y DC 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 21 O2 ? ? X DG 408 Y DC 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 21 N4 ? ? X DG 408 Y DC 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 20 N3 ? ? X DG 409 Y DC 520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 20 O2 ? ? X DG 409 Y DC 520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 20 N4 ? ? X DG 409 Y DC 520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 19 N3 ? ? X DA 410 Y DT 519 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 19 O4 ? ? X DA 410 Y DT 519 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 18 N3 ? ? X DG 411 Y DC 518 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 18 O2 ? ? X DG 411 Y DC 518 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 18 N4 ? ? X DG 411 Y DC 518 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 17 N3 ? ? X DG 412 Y DC 517 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 17 O2 ? ? X DG 412 Y DC 517 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 17 N4 ? ? X DG 412 Y DC 517 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DT 15 N3 ? ? ? 1_555 C DA 16 N1 ? ? X DT 413 Y DA 516 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DT 15 O4 ? ? ? 1_555 C DA 16 N6 ? ? X DT 413 Y DA 516 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DT 16 N3 ? ? ? 1_555 C DA 15 N1 ? ? X DT 414 Y DA 515 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DT 16 O4 ? ? ? 1_555 C DA 15 N6 ? ? X DT 414 Y DA 515 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DT 17 N3 ? ? ? 1_555 C DA 14 N1 ? ? X DT 415 Y DA 514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DT 17 O4 ? ? ? 1_555 C DA 14 N6 ? ? X DT 415 Y DA 514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DC 18 N3 ? ? ? 1_555 C DG 13 N1 ? ? X DC 416 Y DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DC 18 N4 ? ? ? 1_555 C DG 13 O6 ? ? X DC 416 Y DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DC 18 O2 ? ? ? 1_555 C DG 13 N2 ? ? X DC 416 Y DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DT 19 N3 ? ? ? 1_555 C DA 12 N1 ? ? X DT 417 Y DA 512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DT 19 O4 ? ? ? 1_555 C DA 12 N6 ? ? X DT 417 Y DA 512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DC 20 N3 ? ? ? 1_555 C DG 11 N1 ? ? X DC 418 Y DG 511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DC 20 N4 ? ? ? 1_555 C DG 11 O6 ? ? X DC 418 Y DG 511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DC 20 O2 ? ? ? 1_555 C DG 11 N2 ? ? X DC 418 Y DG 511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DT 21 N3 ? ? ? 1_555 C DA 10 N1 ? ? X DT 419 Y DA 510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DT 21 O4 ? ? ? 1_555 C DA 10 N6 ? ? X DT 419 Y DA 510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DG 22 N1 ? ? ? 1_555 C DC 9 N3 ? ? X DG 420 Y DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B DG 22 N2 ? ? ? 1_555 C DC 9 O2 ? ? X DG 420 Y DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DG 22 O6 ? ? ? 1_555 C DC 9 N4 ? ? X DG 420 Y DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DT 23 N3 ? ? ? 1_555 C DA 8 N1 ? ? X DT 421 Y DA 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DT 23 O4 ? ? ? 1_555 C DA 8 N6 ? ? X DT 421 Y DA 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DA 24 N1 ? ? ? 1_555 C DT 7 N3 ? ? X DA 422 Y DT 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DA 24 N6 ? ? ? 1_555 C DT 7 O4 ? ? X DA 422 Y DT 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DA 25 N1 ? ? ? 1_555 C DT 6 N3 ? ? X DA 423 Y DT 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B DA 25 N6 ? ? ? 1_555 C DT 6 O4 ? ? X DA 423 Y DT 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DA 26 N1 ? ? ? 1_555 C DT 5 N3 ? ? X DA 424 Y DT 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DA 26 N6 ? ? ? 1_555 C DT 5 O4 ? ? X DA 424 Y DT 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B DG 27 N1 ? ? ? 1_555 C DC 4 N3 ? ? X DG 425 Y DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B DG 27 N2 ? ? ? 1_555 C DC 4 O2 ? ? X DG 425 Y DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DG 27 O6 ? ? ? 1_555 C DC 4 N4 ? ? X DG 425 Y DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DC 28 N3 ? ? ? 1_555 C DG 3 N1 ? ? X DC 426 Y DG 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B DC 28 N4 ? ? ? 1_555 C DG 3 O6 ? ? X DC 426 Y DG 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B DC 28 O2 ? ? ? 1_555 C DG 3 N2 ? ? X DC 426 Y DG 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B DG 29 N1 ? ? ? 1_555 C DC 2 N3 ? ? X DG 427 Y DC 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B DG 29 N2 ? ? ? 1_555 C DC 2 O2 ? ? X DG 427 Y DC 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B DG 29 O6 ? ? ? 1_555 C DC 2 N4 ? ? X DG 427 Y DC 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 17 ? LYS A 24 ? GLY Z 17 LYS Z 24 A 2 TYR A 27 ? SER A 37 ? TYR Z 27 SER Z 37 A 3 MSE A 66 ? ILE A 71 ? MSE Z 66 ILE Z 71 A 4 ILE A 55 ? ARG A 59 ? ILE Z 55 ARG Z 59 B 1 GLY A 149 ? SER A 152 ? GLY Z 149 SER Z 152 B 2 SER A 166 ? ARG A 172 ? SER Z 166 ARG Z 172 B 3 CYS A 198 ? VAL A 203 ? CYS Z 198 VAL Z 203 B 4 TYR A 192 ? LEU A 193 ? TYR Z 192 LEU Z 193 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 22 ? N THR Z 22 O THR A 29 ? O THR Z 29 A 2 3 N LEU A 36 ? N LEU Z 36 O VAL A 67 ? O VAL Z 67 A 3 4 O ARG A 70 ? O ARG Z 70 N ILE A 55 ? N ILE Z 55 B 1 2 N SER A 152 ? N SER Z 152 O SER A 166 ? O SER Z 166 B 2 3 N PHE A 167 ? N PHE Z 167 O VAL A 203 ? O VAL Z 203 B 3 4 O LYS A 200 ? O LYS Z 200 N TYR A 192 ? N TYR Z 192 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software Z MG 601 ? 8 'BINDING SITE FOR RESIDUE MG Z 601' AC2 Software Z MG 602 ? 5 'BINDING SITE FOR RESIDUE MG Z 602' AC3 Software Z MG 603 ? 5 'BINDING SITE FOR RESIDUE MG Z 603' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC B 18 ? DC X 416 . ? 1_555 ? 2 AC1 8 DT B 19 ? DT X 417 . ? 1_555 ? 3 AC1 8 DA C 16 ? DA Y 516 . ? 1_555 ? 4 AC1 8 DC C 17 ? DC Y 517 . ? 1_555 ? 5 AC1 8 GLY A 15 ? GLY Z 15 . ? 1_555 ? 6 AC1 8 ASP A 16 ? ASP Z 16 . ? 1_555 ? 7 AC1 8 GLU A 148 ? GLU Z 148 . ? 1_555 ? 8 AC1 8 MG F . ? MG Z 603 . ? 1_555 ? 9 AC2 5 DT B 19 ? DT X 417 . ? 1_555 ? 10 AC2 5 HOH I . ? HOH Y 1 . ? 1_555 ? 11 AC2 5 DA C 16 ? DA Y 516 . ? 1_555 ? 12 AC2 5 ASP A 16 ? ASP Z 16 . ? 1_555 ? 13 AC2 5 ALA A 147 ? ALA Z 147 . ? 1_555 ? 14 AC3 5 DC B 18 ? DC X 416 . ? 1_555 ? 15 AC3 5 DC C 17 ? DC Y 517 . ? 1_555 ? 16 AC3 5 GLY A 15 ? GLY Z 15 . ? 1_555 ? 17 AC3 5 GLU A 148 ? GLU Z 148 . ? 1_555 ? 18 AC3 5 MG D . ? MG Z 601 . ? 1_555 ? # _atom_sites.entry_id 2QOJ _atom_sites.fract_transf_matrix[1][1] 0.016569 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004094 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013755 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016859 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY Z . n A 1 2 SER 2 2 2 SER SER Z . n A 1 3 ASP 3 3 3 ASP ASP Z . n A 1 4 LEU 4 4 4 LEU LEU Z . n A 1 5 THR 5 5 5 THR THR Z . n A 1 6 TYR 6 6 6 TYR TYR Z . n A 1 7 ALA 7 7 7 ALA ALA Z . n A 1 8 TYR 8 8 8 TYR TYR Z . n A 1 9 LEU 9 9 9 LEU LEU Z . n A 1 10 VAL 10 10 10 VAL VAL Z . n A 1 11 GLY 11 11 11 GLY GLY Z . n A 1 12 LEU 12 12 12 LEU LEU Z . n A 1 13 PHE 13 13 13 PHE PHE Z . n A 1 14 GLU 14 14 14 GLU GLU Z . n A 1 15 GLY 15 15 15 GLY GLY Z . n A 1 16 ASP 16 16 16 ASP ASP Z . n A 1 17 GLY 17 17 17 GLY GLY Z . n A 1 18 TYR 18 18 18 TYR TYR Z . n A 1 19 PHE 19 19 19 PHE PHE Z . n A 1 20 SER 20 20 20 SER SER Z . n A 1 21 ILE 21 21 21 ILE ILE Z . n A 1 22 THR 22 22 22 THR THR Z . n A 1 23 LYS 23 23 23 LYS LYS Z . n A 1 24 LYS 24 24 24 LYS LYS Z . n A 1 25 GLY 25 25 25 GLY GLY Z . n A 1 26 LYS 26 26 26 LYS LYS Z . n A 1 27 TYR 27 27 27 TYR TYR Z . n A 1 28 LEU 28 28 28 LEU LEU Z . n A 1 29 THR 29 29 29 THR THR Z . n A 1 30 TYR 30 30 30 TYR TYR Z . n A 1 31 GLU 31 31 31 GLU GLU Z . n A 1 32 LEU 32 32 32 LEU LEU Z . n A 1 33 GLY 33 33 33 GLY GLY Z . n A 1 34 ILE 34 34 34 ILE ILE Z . n A 1 35 GLU 35 35 35 GLU GLU Z . n A 1 36 LEU 36 36 36 LEU LEU Z . n A 1 37 SER 37 37 37 SER SER Z . n A 1 38 ILE 38 38 38 ILE ILE Z . n A 1 39 LYS 39 39 39 LYS LYS Z . n A 1 40 ASP 40 40 40 ASP ASP Z . n A 1 41 VAL 41 41 41 VAL VAL Z . n A 1 42 GLN 42 42 42 GLN GLN Z . n A 1 43 LEU 43 43 43 LEU LEU Z . n A 1 44 ILE 44 44 44 ILE ILE Z . n A 1 45 TYR 45 45 45 TYR TYR Z . n A 1 46 LYS 46 46 46 LYS LYS Z . n A 1 47 ILE 47 47 47 ILE ILE Z . n A 1 48 LYS 48 48 48 LYS LYS Z . n A 1 49 LYS 49 49 49 LYS LYS Z . n A 1 50 ILE 50 50 50 ILE ILE Z . n A 1 51 LEU 51 51 51 LEU LEU Z . n A 1 52 GLY 52 52 52 GLY GLY Z . n A 1 53 ILE 53 53 53 ILE ILE Z . n A 1 54 GLY 54 54 54 GLY GLY Z . n A 1 55 ILE 55 55 55 ILE ILE Z . n A 1 56 VAL 56 56 56 VAL VAL Z . n A 1 57 SER 57 57 57 SER SER Z . n A 1 58 PHE 58 58 58 PHE PHE Z . n A 1 59 ARG 59 59 59 ARG ARG Z . n A 1 60 LYS 60 60 60 LYS LYS Z . n A 1 61 ARG 61 61 61 ARG ARG Z . n A 1 62 ASN 62 62 62 ASN ASN Z . n A 1 63 GLU 63 63 63 GLU GLU Z . n A 1 64 ILE 64 64 64 ILE ILE Z . n A 1 65 GLU 65 65 65 GLU GLU Z . n A 1 66 MSE 66 66 66 MSE MSE Z . n A 1 67 VAL 67 67 67 VAL VAL Z . n A 1 68 ALA 68 68 68 ALA ALA Z . n A 1 69 LEU 69 69 69 LEU LEU Z . n A 1 70 ARG 70 70 70 ARG ARG Z . n A 1 71 ILE 71 71 71 ILE ILE Z . n A 1 72 ARG 72 72 72 ARG ARG Z . n A 1 73 ASP 73 73 73 ASP ASP Z . n A 1 74 LYS 74 74 74 LYS LYS Z . n A 1 75 ASN 75 75 75 ASN ASN Z . n A 1 76 HIS 76 76 76 HIS HIS Z . n A 1 77 LEU 77 77 77 LEU LEU Z . n A 1 78 LYS 78 78 78 LYS LYS Z . n A 1 79 SER 79 79 79 SER SER Z . n A 1 80 PHE 80 80 80 PHE PHE Z . n A 1 81 ILE 81 81 81 ILE ILE Z . n A 1 82 LEU 82 82 82 LEU LEU Z . n A 1 83 PRO 83 83 83 PRO PRO Z . n A 1 84 ILE 84 84 84 ILE ILE Z . n A 1 85 PHE 85 85 85 PHE PHE Z . n A 1 86 GLU 86 86 86 GLU GLU Z . n A 1 87 LYS 87 87 87 LYS LYS Z . n A 1 88 TYR 88 88 88 TYR TYR Z . n A 1 89 PRO 89 89 89 PRO PRO Z . n A 1 90 MSE 90 90 90 MSE MSE Z . n A 1 91 PHE 91 91 91 PHE PHE Z . n A 1 92 SER 92 92 92 SER SER Z . n A 1 93 ASN 93 93 93 ASN ASN Z . n A 1 94 LYS 94 94 94 LYS LYS Z . n A 1 95 GLN 95 95 95 GLN GLN Z . n A 1 96 TYR 96 96 96 TYR TYR Z . n A 1 97 ASP 97 97 97 ASP ASP Z . n A 1 98 TYR 98 98 98 TYR TYR Z . n A 1 99 LEU 99 99 99 LEU LEU Z . n A 1 100 ARG 100 100 100 ARG ARG Z . n A 1 101 PHE 101 101 101 PHE PHE Z . n A 1 102 ARG 102 102 102 ARG ARG Z . n A 1 103 ASN 103 103 103 ASN ASN Z . n A 1 104 ALA 104 104 104 ALA ALA Z . n A 1 105 LEU 105 105 105 LEU LEU Z . n A 1 106 LEU 106 106 106 LEU LEU Z . n A 1 107 SER 107 107 107 SER SER Z . n A 1 108 GLY 108 108 108 GLY GLY Z . n A 1 109 ILE 109 109 109 ILE ILE Z . n A 1 110 ILE 110 110 110 ILE ILE Z . n A 1 111 SER 111 111 111 SER SER Z . n A 1 112 LEU 112 112 112 LEU LEU Z . n A 1 113 GLU 113 113 113 GLU GLU Z . n A 1 114 ASP 114 114 114 ASP ASP Z . n A 1 115 LEU 115 115 115 LEU LEU Z . n A 1 116 PRO 116 116 116 PRO PRO Z . n A 1 117 ASP 117 117 117 ASP ASP Z . n A 1 118 TYR 118 118 118 TYR TYR Z . n A 1 119 THR 119 119 119 THR THR Z . n A 1 120 ARG 120 120 120 ARG ARG Z . n A 1 121 SER 121 121 121 SER SER Z . n A 1 122 ASP 122 122 122 ASP ASP Z . n A 1 123 GLU 123 123 123 GLU GLU Z . n A 1 124 PRO 124 124 124 PRO PRO Z . n A 1 125 LEU 125 125 125 LEU LEU Z . n A 1 126 ASN 126 126 126 ASN ASN Z . n A 1 127 SER 127 127 127 SER SER Z . n A 1 128 ILE 128 128 128 ILE ILE Z . n A 1 129 GLU 129 129 129 GLU GLU Z . n A 1 130 SER 130 130 130 SER SER Z . n A 1 131 ILE 131 131 131 ILE ILE Z . n A 1 132 ILE 132 132 132 ILE ILE Z . n A 1 133 ASN 133 133 133 ASN ASN Z . n A 1 134 THR 134 134 134 THR THR Z . n A 1 135 SER 135 135 135 SER SER Z . n A 1 136 TYR 136 136 136 TYR TYR Z . n A 1 137 PHE 137 137 137 PHE PHE Z . n A 1 138 SER 138 138 138 SER SER Z . n A 1 139 ALA 139 139 139 ALA ALA Z . n A 1 140 TRP 140 140 140 TRP TRP Z . n A 1 141 LEU 141 141 141 LEU LEU Z . n A 1 142 VAL 142 142 142 VAL VAL Z . n A 1 143 GLY 143 143 143 GLY GLY Z . n A 1 144 PHE 144 144 144 PHE PHE Z . n A 1 145 ILE 145 145 145 ILE ILE Z . n A 1 146 GLU 146 146 146 GLU GLU Z . n A 1 147 ALA 147 147 147 ALA ALA Z . n A 1 148 GLU 148 148 148 GLU GLU Z . n A 1 149 GLY 149 149 149 GLY GLY Z . n A 1 150 CYS 150 150 150 CYS CYS Z . n A 1 151 PHE 151 151 151 PHE PHE Z . n A 1 152 SER 152 152 152 SER SER Z . n A 1 153 VAL 153 153 153 VAL VAL Z . n A 1 154 TYR 154 154 154 TYR TYR Z . n A 1 155 LYS 155 155 155 LYS LYS Z . n A 1 156 LEU 156 156 156 LEU LEU Z . n A 1 157 ASN 157 157 157 ASN ASN Z . n A 1 158 LYS 158 158 158 LYS LYS Z . n A 1 159 ASP 159 159 159 ASP ASP Z . n A 1 160 ASP 160 160 160 ASP ASP Z . n A 1 161 ASP 161 161 161 ASP ASP Z . n A 1 162 TYR 162 162 162 TYR TYR Z . n A 1 163 LEU 163 163 163 LEU LEU Z . n A 1 164 ILE 164 164 164 ILE ILE Z . n A 1 165 ALA 165 165 165 ALA ALA Z . n A 1 166 SER 166 166 166 SER SER Z . n A 1 167 PHE 167 167 167 PHE PHE Z . n A 1 168 ASP 168 168 168 ASP ASP Z . n A 1 169 ILE 169 169 169 ILE ILE Z . n A 1 170 ALA 170 170 170 ALA ALA Z . n A 1 171 GLN 171 171 171 GLN GLN Z . n A 1 172 ARG 172 172 172 ARG ARG Z . n A 1 173 ASP 173 173 173 ASP ASP Z . n A 1 174 GLY 174 174 174 GLY GLY Z . n A 1 175 ASP 175 175 175 ASP ASP Z . n A 1 176 ILE 176 176 176 ILE ILE Z . n A 1 177 LEU 177 177 177 LEU LEU Z . n A 1 178 ILE 178 178 178 ILE ILE Z . n A 1 179 SER 179 179 179 SER SER Z . n A 1 180 ALA 180 180 180 ALA ALA Z . n A 1 181 ILE 181 181 181 ILE ILE Z . n A 1 182 ARG 182 182 182 ARG ARG Z . n A 1 183 LYS 183 183 183 LYS LYS Z . n A 1 184 TYR 184 184 184 TYR TYR Z . n A 1 185 LEU 185 185 185 LEU LEU Z . n A 1 186 SER 186 186 186 SER SER Z . n A 1 187 PHE 187 187 187 PHE PHE Z . n A 1 188 THR 188 188 188 THR THR Z . n A 1 189 THR 189 189 189 THR THR Z . n A 1 190 LYS 190 190 190 LYS LYS Z . n A 1 191 VAL 191 191 191 VAL VAL Z . n A 1 192 TYR 192 192 192 TYR TYR Z . n A 1 193 LEU 193 193 193 LEU LEU Z . n A 1 194 ASP 194 194 194 ASP ASP Z . n A 1 195 LYS 195 195 195 LYS LYS Z . n A 1 196 THR 196 196 196 THR THR Z . n A 1 197 ASN 197 197 197 ASN ASN Z . n A 1 198 CYS 198 198 198 CYS CYS Z . n A 1 199 SER 199 199 199 SER SER Z . n A 1 200 LYS 200 200 200 LYS LYS Z . n A 1 201 LEU 201 201 201 LEU LEU Z . n A 1 202 LYS 202 202 202 LYS LYS Z . n A 1 203 VAL 203 203 203 VAL VAL Z . n A 1 204 THR 204 204 204 THR THR Z . n A 1 205 SER 205 205 205 SER SER Z . n A 1 206 VAL 206 206 206 VAL VAL Z . n A 1 207 ARG 207 207 207 ARG ARG Z . n A 1 208 SER 208 208 208 SER SER Z . n A 1 209 VAL 209 209 209 VAL VAL Z . n A 1 210 GLU 210 210 210 GLU GLU Z . n A 1 211 ASN 211 211 211 ASN ASN Z . n A 1 212 ILE 212 212 212 ILE ILE Z . n A 1 213 ILE 213 213 213 ILE ILE Z . n A 1 214 LYS 214 214 214 LYS LYS Z . n A 1 215 PHE 215 215 215 PHE PHE Z . n A 1 216 LEU 216 216 216 LEU LEU Z . n A 1 217 GLN 217 217 217 GLN GLN Z . n A 1 218 ASN 218 218 218 ASN ASN Z . n A 1 219 ALA 219 219 219 ALA ALA Z . n A 1 220 PRO 220 220 220 PRO PRO Z . n A 1 221 VAL 221 221 221 VAL VAL Z . n A 1 222 LYS 222 222 222 LYS LYS Z . n A 1 223 LEU 223 223 223 LEU LEU Z . n A 1 224 LEU 224 224 224 LEU LEU Z . n A 1 225 GLY 225 225 225 GLY GLY Z . n A 1 226 ASN 226 226 226 ASN ASN Z . n A 1 227 LYS 227 227 227 LYS LYS Z . n A 1 228 LYS 228 228 228 LYS LYS Z . n A 1 229 LEU 229 229 229 LEU LEU Z . n A 1 230 GLN 230 230 230 GLN GLN Z . n A 1 231 TYR 231 231 231 TYR TYR Z . n A 1 232 LEU 232 232 232 LEU LEU Z . n A 1 233 LEU 233 233 233 LEU LEU Z . n A 1 234 TRP 234 234 234 TRP TRP Z . n A 1 235 LEU 235 235 235 LEU LEU Z . n A 1 236 LYS 236 236 236 LYS LYS Z . n A 1 237 GLN 237 237 237 GLN GLN Z . n A 1 238 LEU 238 238 238 LEU LEU Z . n A 1 239 ARG 239 239 239 ARG ARG Z . n A 1 240 LYS 240 240 240 LYS LYS Z . n A 1 241 ILE 241 241 241 ILE ILE Z . n A 1 242 SER 242 242 242 SER SER Z . n A 1 243 ARG 243 243 243 ARG ARG Z . n A 1 244 TYR 244 244 244 TYR TYR Z . n A 1 245 SER 245 245 245 SER SER Z . n A 1 246 GLU 246 246 246 GLU GLU Z . n A 1 247 LYS 247 247 247 LYS LYS Z . n A 1 248 ILE 248 248 248 ILE ILE Z . n A 1 249 LYS 249 249 249 LYS LYS Z . n A 1 250 ILE 250 250 250 ILE ILE Z . n A 1 251 PRO 251 251 251 PRO PRO Z . n A 1 252 SER 252 252 252 SER SER Z . n A 1 253 ASN 253 253 253 ASN ASN Z . n A 1 254 TYR 254 254 254 TYR TYR Z . n B 2 1 DG 1 399 ? ? ? X . n B 2 2 DC 2 400 ? ? ? X . n B 2 3 DG 3 401 401 DG DG X . n B 2 4 DC 4 402 402 DC DC X . n B 2 5 DG 5 403 403 DG DG X . n B 2 6 DC 6 404 404 DC DC X . n B 2 7 DT 7 405 405 DT DT X . n B 2 8 DG 8 406 406 DG DG X . n B 2 9 DA 9 407 407 DA DA X . n B 2 10 DG 10 408 408 DG DG X . n B 2 11 DG 11 409 409 DG DG X . n B 2 12 DA 12 410 410 DA DA X . n B 2 13 DG 13 411 411 DG DG X . n B 2 14 DG 14 412 412 DG DG X . n B 2 15 DT 15 413 413 DT DT X . n B 2 16 DT 16 414 414 DT DT X . n B 2 17 DT 17 415 415 DT DT X . n B 2 18 DC 18 416 416 DC DC X . n B 2 19 DT 19 417 417 DT DT X . n B 2 20 DC 20 418 418 DC DC X . n B 2 21 DT 21 419 419 DT DT X . n B 2 22 DG 22 420 420 DG DG X . n B 2 23 DT 23 421 421 DT DT X . n B 2 24 DA 24 422 422 DA DA X . n B 2 25 DA 25 423 423 DA DA X . n B 2 26 DA 26 424 424 DA DA X . n B 2 27 DG 27 425 425 DG DG X . n B 2 28 DC 28 426 426 DC DC X . n B 2 29 DG 29 427 427 DG DG X . n B 2 30 DC 30 428 428 DC DC X . n B 2 31 DA 31 429 429 DA DA X . n C 3 1 DG 1 501 501 DG DG Y . n C 3 2 DC 2 502 502 DC DC Y . n C 3 3 DG 3 503 503 DG DG Y . n C 3 4 DC 4 504 504 DC DC Y . n C 3 5 DT 5 505 505 DT DT Y . n C 3 6 DT 6 506 506 DT DT Y . n C 3 7 DT 7 507 507 DT DT Y . n C 3 8 DA 8 508 508 DA DA Y . n C 3 9 DC 9 509 509 DC DC Y . n C 3 10 DA 10 510 510 DA DA Y . n C 3 11 DG 11 511 511 DG DG Y . n C 3 12 DA 12 512 512 DA DA Y . n C 3 13 DG 13 513 513 DG DG Y . n C 3 14 DA 14 514 514 DA DA Y . n C 3 15 DA 15 515 515 DA DA Y . n C 3 16 DA 16 516 516 DA DA Y . n C 3 17 DC 17 517 517 DC DC Y . n C 3 18 DC 18 518 518 DC DC Y . n C 3 19 DT 19 519 519 DT DT Y . n C 3 20 DC 20 520 520 DC DC Y . n C 3 21 DC 21 521 521 DC DC Y . n C 3 22 DT 22 522 522 DT DT Y . n C 3 23 DC 23 523 523 DC DC Y . n C 3 24 DA 24 524 524 DA DA Y . n C 3 25 DG 25 525 525 DG DG Y . n C 3 26 DC 26 526 526 DC DC Y . n C 3 27 DG 27 527 527 DG DG Y . n C 3 28 DC 28 528 528 DC DC Y . n C 3 29 DG 29 529 529 DG DG Y . n C 3 30 DC 30 530 530 DC DC Y . n C 3 31 DT 31 531 ? ? ? Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 601 601 MG MG Z . E 4 MG 1 602 602 MG MG Z . F 4 MG 1 603 603 MG MG Z . G 5 HOH 1 604 604 HOH HOH Z . G 5 HOH 2 605 605 HOH HOH Z . G 5 HOH 3 606 606 HOH HOH Z . G 5 HOH 4 607 607 HOH HOH Z . G 5 HOH 5 608 608 HOH HOH Z . G 5 HOH 6 609 609 HOH HOH Z . G 5 HOH 7 610 610 HOH HOH Z . G 5 HOH 8 611 611 HOH HOH Z . G 5 HOH 9 612 612 HOH HOH Z . G 5 HOH 10 613 613 HOH HOH Z . G 5 HOH 11 614 614 HOH HOH Z . G 5 HOH 12 615 615 HOH HOH Z . G 5 HOH 13 616 616 HOH HOH Z . G 5 HOH 14 617 617 HOH HOH Z . G 5 HOH 15 618 618 HOH HOH Z . G 5 HOH 16 619 619 HOH HOH Z . G 5 HOH 17 620 620 HOH HOH Z . G 5 HOH 18 621 621 HOH HOH Z . G 5 HOH 19 622 622 HOH HOH Z . G 5 HOH 20 623 623 HOH HOH Z . G 5 HOH 21 624 624 HOH HOH Z . G 5 HOH 22 625 625 HOH HOH Z . G 5 HOH 23 626 626 HOH HOH Z . G 5 HOH 24 627 627 HOH HOH Z . G 5 HOH 25 628 628 HOH HOH Z . G 5 HOH 26 629 629 HOH HOH Z . G 5 HOH 27 630 630 HOH HOH Z . G 5 HOH 28 631 631 HOH HOH Z . G 5 HOH 29 632 632 HOH HOH Z . G 5 HOH 30 633 633 HOH HOH Z . G 5 HOH 31 634 634 HOH HOH Z . G 5 HOH 32 635 635 HOH HOH Z . G 5 HOH 33 636 636 HOH HOH Z . G 5 HOH 34 637 637 HOH HOH Z . G 5 HOH 35 638 638 HOH HOH Z . G 5 HOH 36 639 639 HOH HOH Z . G 5 HOH 37 640 640 HOH HOH Z . G 5 HOH 38 641 641 HOH HOH Z . H 5 HOH 1 3 3 HOH HOH X . H 5 HOH 2 4 4 HOH HOH X . H 5 HOH 3 24 24 HOH HOH X . H 5 HOH 4 39 39 HOH HOH X . I 5 HOH 1 1 1 HOH HOH Y . I 5 HOH 2 6 6 HOH HOH Y . I 5 HOH 3 16 16 HOH HOH Y . I 5 HOH 4 40 40 HOH HOH Y . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 66 Z MSE 66 ? MET 'modified residue' 2 A MSE 90 Z MSE 90 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8830 ? 1 MORE -89 ? 1 'SSA (A^2)' 18720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLY 15 ? Z GLY 15 ? 1_555 MG ? F MG . ? Z MG 603 ? 1_555 OE2 ? A GLU 148 ? Z GLU 148 ? 1_555 94.7 ? 2 O ? A GLY 15 ? Z GLY 15 ? 1_555 MG ? F MG . ? Z MG 603 ? 1_555 OP1 ? B DC 18 ? X DC 416 ? 1_555 176.5 ? 3 OE2 ? A GLU 148 ? Z GLU 148 ? 1_555 MG ? F MG . ? Z MG 603 ? 1_555 OP1 ? B DC 18 ? X DC 416 ? 1_555 88.6 ? 4 O ? A GLY 15 ? Z GLY 15 ? 1_555 MG ? F MG . ? Z MG 603 ? 1_555 OP2 ? C DC 17 ? Y DC 517 ? 1_555 84.8 ? 5 OE2 ? A GLU 148 ? Z GLU 148 ? 1_555 MG ? F MG . ? Z MG 603 ? 1_555 OP2 ? C DC 17 ? Y DC 517 ? 1_555 131.1 ? 6 OP1 ? B DC 18 ? X DC 416 ? 1_555 MG ? F MG . ? Z MG 603 ? 1_555 OP2 ? C DC 17 ? Y DC 517 ? 1_555 93.8 ? 7 O ? A ALA 147 ? Z ALA 147 ? 1_555 MG ? E MG . ? Z MG 602 ? 1_555 OP2 ? B DT 19 ? X DT 417 ? 1_555 77.5 ? 8 O ? A ALA 147 ? Z ALA 147 ? 1_555 MG ? E MG . ? Z MG 602 ? 1_555 OP1 ? C DA 16 ? Y DA 516 ? 1_555 158.7 ? 9 OP2 ? B DT 19 ? X DT 417 ? 1_555 MG ? E MG . ? Z MG 602 ? 1_555 OP1 ? C DA 16 ? Y DA 516 ? 1_555 123.7 ? 10 "O3'" ? C DA 16 ? Y DA 516 ? 1_555 MG ? D MG . ? Z MG 601 ? 1_555 OP2 ? C DC 17 ? Y DC 517 ? 1_555 70.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Source and taxonomy' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' entity 4 4 'Structure model' entity_name_com 5 4 'Structure model' entity_src_gen 6 4 'Structure model' pdbx_entity_src_syn 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' pdbx_struct_mod_residue 9 4 'Structure model' struct_conn 10 4 'Structure model' struct_conn_type 11 4 'Structure model' struct_ref 12 4 'Structure model' struct_ref_seq 13 4 'Structure model' struct_ref_seq_dif 14 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_entity.pdbx_description' 13 4 'Structure model' '_entity.pdbx_ec' 14 4 'Structure model' '_entity_src_gen.gene_src_strain' 15 4 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 16 4 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 17 4 'Structure model' '_entity_src_gen.pdbx_gene_src_gene' 18 4 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 19 4 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 20 4 'Structure model' '_entity_src_gen.pdbx_seq_type' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 33 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 34 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 35 4 'Structure model' '_pdbx_struct_conn_angle.value' 36 4 'Structure model' '_pdbx_struct_mod_residue.details' 37 4 'Structure model' '_struct_conn.conn_type_id' 38 4 'Structure model' '_struct_conn.id' 39 4 'Structure model' '_struct_conn.pdbx_dist_value' 40 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 41 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 42 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 43 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 44 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 45 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 46 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 47 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 48 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 49 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 50 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 51 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 52 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 53 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 54 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 55 4 'Structure model' '_struct_conn_type.id' 56 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 57 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 58 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O Z HOH 632 ? ? O Z HOH 633 ? ? 1.51 2 1 O Z THR 196 ? ? N Z CYS 198 ? ? 2.04 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 Z _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 610 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 Z _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 630 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_545 _pdbx_validate_symm_contact.dist 1.29 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" X DG 406 ? ? "C3'" X DG 406 ? ? 1.382 1.419 -0.037 0.006 N 2 1 "O3'" Y DC 523 ? ? "C3'" Y DC 523 ? ? 1.368 1.419 -0.051 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N Z ASN 62 ? ? CA Z ASN 62 ? ? C Z ASN 62 ? ? 128.42 111.00 17.42 2.70 N 2 1 "O4'" X DG 401 ? ? "C1'" X DG 401 ? ? N9 X DG 401 ? ? 101.54 108.00 -6.46 0.70 N 3 1 "O4'" X DC 404 ? ? "C4'" X DC 404 ? ? "C3'" X DC 404 ? ? 101.39 104.50 -3.11 0.40 N 4 1 "C1'" X DC 404 ? ? "O4'" X DC 404 ? ? "C4'" X DC 404 ? ? 103.74 110.10 -6.36 1.00 N 5 1 "O4'" X DC 404 ? ? "C1'" X DC 404 ? ? N1 X DC 404 ? ? 110.33 108.30 2.03 0.30 N 6 1 N3 X DT 405 ? ? C2 X DT 405 ? ? O2 X DT 405 ? ? 118.60 122.30 -3.70 0.60 N 7 1 "O4'" X DG 406 ? ? "C1'" X DG 406 ? ? N9 X DG 406 ? ? 111.68 108.30 3.38 0.30 N 8 1 "O4'" X DG 409 ? ? "C1'" X DG 409 ? ? N9 X DG 409 ? ? 114.28 108.30 5.98 0.30 N 9 1 C8 X DG 409 ? ? N9 X DG 409 ? ? C4 X DG 409 ? ? 103.82 106.40 -2.58 0.40 N 10 1 "O4'" X DA 410 ? ? "C1'" X DA 410 ? ? N9 X DA 410 ? ? 113.68 108.30 5.38 0.30 N 11 1 "O4'" X DG 411 ? ? "C1'" X DG 411 ? ? N9 X DG 411 ? ? 111.25 108.30 2.95 0.30 N 12 1 "O4'" X DT 415 ? ? "C1'" X DT 415 ? ? N1 X DT 415 ? ? 103.54 108.00 -4.46 0.70 N 13 1 "C3'" X DC 416 ? ? "C2'" X DC 416 ? ? "C1'" X DC 416 ? ? 97.57 102.40 -4.83 0.80 N 14 1 N1 X DC 416 ? ? "C1'" X DC 416 ? ? "C2'" X DC 416 ? ? 123.10 114.30 8.80 1.40 N 15 1 "O4'" X DT 417 ? ? "C1'" X DT 417 ? ? N1 X DT 417 ? ? 113.01 108.30 4.71 0.30 N 16 1 "O4'" X DT 419 ? ? "C1'" X DT 419 ? ? N1 X DT 419 ? ? 112.40 108.30 4.10 0.30 N 17 1 "O4'" X DA 423 ? ? "C1'" X DA 423 ? ? N9 X DA 423 ? ? 111.97 108.30 3.67 0.30 N 18 1 "O4'" X DA 424 ? ? "C1'" X DA 424 ? ? N9 X DA 424 ? ? 112.39 108.30 4.09 0.30 N 19 1 "O4'" X DG 425 ? ? "C1'" X DG 425 ? ? N9 X DG 425 ? ? 111.33 108.30 3.03 0.30 N 20 1 "O4'" X DC 428 ? ? "C1'" X DC 428 ? ? N1 X DC 428 ? ? 112.84 108.30 4.54 0.30 N 21 1 "O4'" X DA 429 ? ? "C1'" X DA 429 ? ? N9 X DA 429 ? ? 111.54 108.30 3.24 0.30 N 22 1 "C3'" Y DG 501 ? ? "O3'" Y DG 501 ? ? P Y DC 502 ? ? 128.08 119.70 8.38 1.20 Y 23 1 "O4'" Y DC 502 ? ? "C1'" Y DC 502 ? ? N1 Y DC 502 ? ? 110.50 108.30 2.20 0.30 N 24 1 "O4'" Y DT 505 ? ? "C1'" Y DT 505 ? ? N1 Y DT 505 ? ? 111.74 108.30 3.44 0.30 N 25 1 "O4'" Y DT 506 ? ? "C1'" Y DT 506 ? ? N1 Y DT 506 ? ? 110.29 108.30 1.99 0.30 N 26 1 "O4'" Y DT 507 ? ? "C1'" Y DT 507 ? ? N1 Y DT 507 ? ? 112.55 108.30 4.25 0.30 N 27 1 "O4'" Y DA 510 ? ? "C1'" Y DA 510 ? ? N9 Y DA 510 ? ? 110.26 108.30 1.96 0.30 N 28 1 "O4'" Y DG 513 ? ? "C1'" Y DG 513 ? ? N9 Y DG 513 ? ? 112.15 108.30 3.85 0.30 N 29 1 "C3'" Y DA 514 ? ? "O3'" Y DA 514 ? ? P Y DA 515 ? ? 126.99 119.70 7.29 1.20 Y 30 1 N1 Y DA 516 ? ? C2 Y DA 516 ? ? N3 Y DA 516 ? ? 125.96 129.30 -3.34 0.50 N 31 1 "O5'" Y DC 517 ? ? "C5'" Y DC 517 ? ? "C4'" Y DC 517 ? ? 103.06 109.40 -6.34 0.80 N 32 1 "O4'" Y DC 517 ? ? "C1'" Y DC 517 ? ? N1 Y DC 517 ? ? 110.23 108.30 1.93 0.30 N 33 1 "O4'" Y DC 518 ? ? "C1'" Y DC 518 ? ? N1 Y DC 518 ? ? 113.00 108.30 4.70 0.30 N 34 1 "O4'" Y DT 519 ? ? "C1'" Y DT 519 ? ? N1 Y DT 519 ? ? 112.47 108.30 4.17 0.30 N 35 1 "O4'" Y DC 520 ? ? "C1'" Y DC 520 ? ? N1 Y DC 520 ? ? 111.63 108.30 3.33 0.30 N 36 1 "O4'" Y DC 521 ? ? "C1'" Y DC 521 ? ? N1 Y DC 521 ? ? 110.82 108.30 2.52 0.30 N 37 1 "O4'" Y DC 523 ? ? "C1'" Y DC 523 ? ? N1 Y DC 523 ? ? 110.19 108.30 1.89 0.30 N 38 1 "O4'" Y DA 524 ? ? "C1'" Y DA 524 ? ? N9 Y DA 524 ? ? 110.59 108.30 2.29 0.30 N 39 1 "C3'" Y DG 525 ? ? "C2'" Y DG 525 ? ? "C1'" Y DG 525 ? ? 97.52 102.40 -4.88 0.80 N 40 1 "O4'" Y DG 525 ? ? "C1'" Y DG 525 ? ? N9 Y DG 525 ? ? 110.43 108.30 2.13 0.30 N 41 1 "O4'" Y DG 529 ? ? "C1'" Y DG 529 ? ? N9 Y DG 529 ? ? 112.96 108.30 4.66 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER Z 2 ? ? 4.00 170.86 2 1 TYR Z 27 ? ? -129.31 -157.58 3 1 ARG Z 61 ? ? 24.44 82.53 4 1 ASN Z 62 ? ? -37.65 -12.81 5 1 ILE Z 164 ? ? -98.74 -61.32 6 1 ALA Z 165 ? ? 72.48 94.30 7 1 ASN Z 197 ? ? -11.69 35.38 8 1 THR Z 204 ? ? -148.71 -38.44 9 1 PRO Z 251 ? ? -87.59 -151.13 10 1 SER Z 252 ? ? 158.53 -168.56 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ARG _pdbx_validate_peptide_omega.auth_asym_id_1 Z _pdbx_validate_peptide_omega.auth_seq_id_1 61 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 Z _pdbx_validate_peptide_omega.auth_seq_id_2 62 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -120.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X DG 399 ? B DG 1 2 1 Y 1 X DC 400 ? B DC 2 3 1 Y 1 Y DT 531 ? C DT 31 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2QOJ 'double helix' 2QOJ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 3 1_555 C DC 28 1_555 0.688 0.855 0.945 6.486 -18.576 22.250 1 X_DG401:DC528_Y X 401 ? Y 528 ? ? 1 1 B DC 4 1_555 C DG 27 1_555 0.547 -0.460 -0.047 -1.538 -13.089 -1.269 2 X_DC402:DG527_Y X 402 ? Y 527 ? 19 1 1 B DG 5 1_555 C DC 26 1_555 -0.213 -0.283 -0.092 -7.395 -10.658 -1.152 3 X_DG403:DC526_Y X 403 ? Y 526 ? 19 1 1 B DC 6 1_555 C DG 25 1_555 0.332 0.002 -0.149 -7.362 -4.213 -1.895 4 X_DC404:DG525_Y X 404 ? Y 525 ? 19 1 1 B DT 7 1_555 C DA 24 1_555 0.129 -0.178 0.312 -8.631 -13.167 1.154 5 X_DT405:DA524_Y X 405 ? Y 524 ? 20 1 1 B DG 8 1_555 C DC 23 1_555 -0.421 -0.235 -0.013 1.684 -5.125 -1.668 6 X_DG406:DC523_Y X 406 ? Y 523 ? 19 1 1 B DA 9 1_555 C DT 22 1_555 0.448 -0.077 -0.120 3.865 -16.844 -2.572 7 X_DA407:DT522_Y X 407 ? Y 522 ? 20 1 1 B DG 10 1_555 C DC 21 1_555 -0.724 -0.078 0.282 7.601 -14.428 -0.978 8 X_DG408:DC521_Y X 408 ? Y 521 ? 19 1 1 B DG 11 1_555 C DC 20 1_555 -0.210 -0.352 -0.472 -7.047 -4.724 -0.828 9 X_DG409:DC520_Y X 409 ? Y 520 ? 19 1 1 B DA 12 1_555 C DT 19 1_555 0.456 -0.301 -0.135 5.782 -9.435 2.635 10 X_DA410:DT519_Y X 410 ? Y 519 ? 20 1 1 B DG 13 1_555 C DC 18 1_555 -0.302 -0.259 -0.102 -0.920 -11.202 -1.243 11 X_DG411:DC518_Y X 411 ? Y 518 ? 19 1 1 B DG 14 1_555 C DC 17 1_555 -0.368 -0.314 -0.230 -10.764 -16.026 0.689 12 X_DG412:DC517_Y X 412 ? Y 517 ? 19 1 1 B DT 15 1_555 C DA 16 1_555 -0.212 -0.202 0.180 -2.862 -18.096 -1.854 13 X_DT413:DA516_Y X 413 ? Y 516 ? 20 1 1 B DT 16 1_555 C DA 15 1_555 -0.569 -0.050 0.429 -3.025 -15.304 5.900 14 X_DT414:DA515_Y X 414 ? Y 515 ? 20 1 1 B DT 17 1_555 C DA 14 1_555 -0.570 -0.144 0.317 -8.036 -38.440 -7.308 15 X_DT415:DA514_Y X 415 ? Y 514 ? 20 1 1 B DC 18 1_555 C DG 13 1_555 0.384 0.061 0.623 -23.024 -24.268 4.006 16 X_DC416:DG513_Y X 416 ? Y 513 ? 19 1 1 B DT 19 1_555 C DA 12 1_555 -0.450 -0.077 0.171 -16.898 -21.288 -1.222 17 X_DT417:DA512_Y X 417 ? Y 512 ? 20 1 1 B DC 20 1_555 C DG 11 1_555 -0.054 -0.075 -0.049 -5.783 -6.984 0.212 18 X_DC418:DG511_Y X 418 ? Y 511 ? 19 1 1 B DT 21 1_555 C DA 10 1_555 -0.055 -0.062 -0.350 -5.218 4.165 -3.591 19 X_DT419:DA510_Y X 419 ? Y 510 ? 20 1 1 B DG 22 1_555 C DC 9 1_555 -0.672 -0.224 0.184 -8.151 -11.918 0.416 20 X_DG420:DC509_Y X 420 ? Y 509 ? 19 1 1 B DT 23 1_555 C DA 8 1_555 -0.004 -0.016 0.162 0.010 -9.700 -0.648 21 X_DT421:DA508_Y X 421 ? Y 508 ? 20 1 1 B DA 24 1_555 C DT 7 1_555 0.128 -0.113 -0.215 -2.338 -16.738 0.317 22 X_DA422:DT507_Y X 422 ? Y 507 ? 20 1 1 B DA 25 1_555 C DT 6 1_555 0.379 -0.070 -0.100 -0.786 -5.180 -1.269 23 X_DA423:DT506_Y X 423 ? Y 506 ? 20 1 1 B DA 26 1_555 C DT 5 1_555 0.175 -0.407 0.171 7.316 -5.658 -4.792 24 X_DA424:DT505_Y X 424 ? Y 505 ? 20 1 1 B DG 27 1_555 C DC 4 1_555 -0.548 -0.133 -0.095 -1.281 -3.914 -9.230 25 X_DG425:DC504_Y X 425 ? Y 504 ? 19 1 1 B DC 28 1_555 C DG 3 1_555 -0.092 -0.187 0.299 -1.548 -11.726 -2.428 26 X_DC426:DG503_Y X 426 ? Y 503 ? 19 1 1 B DG 29 1_555 C DC 2 1_555 -0.173 -0.334 0.369 2.871 -9.777 -3.508 27 X_DG427:DC502_Y X 427 ? Y 502 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 3 1_555 C DC 28 1_555 B DC 4 1_555 C DG 27 1_555 -1.104 0.054 3.595 3.988 -0.349 30.221 0.177 2.957 3.423 -0.666 -7.607 30.478 1 XX_DG401DC402:DG527DC528_YY X 401 ? Y 528 ? X 402 ? Y 527 ? 1 B DC 4 1_555 C DG 27 1_555 B DG 5 1_555 C DC 26 1_555 -0.061 0.806 3.435 -0.367 12.725 30.902 -0.924 0.039 3.488 22.711 0.654 33.362 2 XX_DC402DG403:DC526DG527_YY X 402 ? Y 527 ? X 403 ? Y 526 ? 1 B DG 5 1_555 C DC 26 1_555 B DC 6 1_555 C DG 25 1_555 0.869 -0.374 3.275 1.944 1.745 34.337 -0.905 -1.163 3.295 2.951 -3.287 34.434 3 XX_DG403DC404:DG525DC526_YY X 403 ? Y 526 ? X 404 ? Y 525 ? 1 B DC 6 1_555 C DG 25 1_555 B DT 7 1_555 C DA 24 1_555 -0.351 -1.046 3.338 -0.759 3.659 30.171 -2.730 0.517 3.200 6.995 1.451 30.396 4 XX_DC404DT405:DA524DG525_YY X 404 ? Y 525 ? X 405 ? Y 524 ? 1 B DT 7 1_555 C DA 24 1_555 B DG 8 1_555 C DC 23 1_555 0.510 1.245 3.157 5.479 4.880 34.358 1.330 -0.022 3.337 8.147 -9.147 35.110 5 XX_DT405DG406:DC523DA524_YY X 405 ? Y 524 ? X 406 ? Y 523 ? 1 B DG 8 1_555 C DC 23 1_555 B DA 9 1_555 C DT 22 1_555 -0.945 0.941 3.473 -2.193 0.345 40.827 1.306 1.095 3.525 0.495 3.140 40.885 6 XX_DG406DA407:DT522DC523_YY X 406 ? Y 523 ? X 407 ? Y 522 ? 1 B DA 9 1_555 C DT 22 1_555 B DG 10 1_555 C DC 21 1_555 0.870 -0.404 3.269 -2.270 -0.392 27.975 -0.741 -2.322 3.195 -0.810 4.685 28.068 7 XX_DA407DG408:DC521DT522_YY X 407 ? Y 522 ? X 408 ? Y 521 ? 1 B DG 10 1_555 C DC 21 1_555 B DG 11 1_555 C DC 20 1_555 1.073 -1.021 3.732 5.943 5.713 33.124 -2.779 -0.750 3.643 9.832 -10.228 34.106 8 XX_DG408DG409:DC520DC521_YY X 408 ? Y 521 ? X 409 ? Y 520 ? 1 B DG 11 1_555 C DC 20 1_555 B DA 12 1_555 C DT 19 1_555 0.734 -0.811 3.156 -0.802 4.975 29.021 -2.597 -1.605 2.958 9.833 1.585 29.446 9 XX_DG409DA410:DT519DC520_YY X 409 ? Y 520 ? X 410 ? Y 519 ? 1 B DA 12 1_555 C DT 19 1_555 B DG 13 1_555 C DC 18 1_555 -1.055 -0.816 3.464 -3.377 3.264 33.691 -1.949 1.230 3.458 5.598 5.792 34.007 10 XX_DA410DG411:DC518DT519_YY X 410 ? Y 519 ? X 411 ? Y 518 ? 1 B DG 13 1_555 C DC 18 1_555 B DG 14 1_555 C DC 17 1_555 -0.198 -1.440 3.567 -1.917 4.991 32.317 -3.466 0.001 3.319 8.891 3.415 32.745 11 XX_DG411DG412:DC517DC518_YY X 411 ? Y 518 ? X 412 ? Y 517 ? 1 B DG 14 1_555 C DC 17 1_555 B DT 15 1_555 C DA 16 1_555 -0.732 -0.879 3.075 -6.024 2.625 35.005 -1.800 0.366 3.082 4.317 9.906 35.598 12 XX_DG412DT413:DA516DC517_YY X 412 ? Y 517 ? X 413 ? Y 516 ? 1 B DT 15 1_555 C DA 16 1_555 B DT 16 1_555 C DA 15 1_555 -0.390 -0.805 3.357 -3.327 -6.871 29.211 -0.062 0.030 3.474 -13.339 6.458 30.171 13 XX_DT413DT414:DA515DA516_YY X 413 ? Y 516 ? X 414 ? Y 515 ? 1 B DT 16 1_555 C DA 15 1_555 B DT 17 1_555 C DA 14 1_555 -1.771 1.306 3.471 -2.476 -22.063 48.454 2.884 1.825 2.759 -25.395 2.850 53.018 14 XX_DT414DT415:DA514DA515_YY X 414 ? Y 515 ? X 415 ? Y 514 ? 1 B DT 17 1_555 C DA 14 1_555 B DC 18 1_555 C DG 13 1_555 1.503 1.493 3.732 3.232 -10.928 45.186 2.908 -1.602 3.397 -13.961 -4.129 46.528 15 XX_DT415DC416:DG513DA514_YY X 415 ? Y 514 ? X 416 ? Y 513 ? 1 B DC 18 1_555 C DG 13 1_555 B DT 19 1_555 C DA 12 1_555 -0.838 0.563 3.261 -0.183 1.461 29.842 0.789 1.587 3.289 2.835 0.355 29.877 16 XX_DC416DT417:DA512DG513_YY X 416 ? Y 513 ? X 417 ? Y 512 ? 1 B DT 19 1_555 C DA 12 1_555 B DC 20 1_555 C DG 11 1_555 0.989 0.231 3.124 4.008 4.652 36.948 -0.236 -1.028 3.215 7.278 -6.271 37.437 17 XX_DT417DC418:DG511DA512_YY X 417 ? Y 512 ? X 418 ? Y 511 ? 1 B DC 20 1_555 C DG 11 1_555 B DT 21 1_555 C DA 10 1_555 1.179 -0.019 3.428 4.085 1.356 33.142 -0.272 -1.327 3.540 2.366 -7.125 33.413 18 XX_DC418DT419:DA510DG511_YY X 418 ? Y 511 ? X 419 ? Y 510 ? 1 B DT 21 1_555 C DA 10 1_555 B DG 22 1_555 C DC 9 1_555 0.599 -1.213 3.328 -2.501 6.417 19.624 -5.988 -2.685 2.701 18.120 7.063 20.786 19 XX_DT419DG420:DC509DA510_YY X 419 ? Y 510 ? X 420 ? Y 509 ? 1 B DG 22 1_555 C DC 9 1_555 B DT 23 1_555 C DA 8 1_555 -1.045 -0.337 3.189 1.574 0.176 38.683 -0.529 1.763 3.144 0.265 -2.376 38.715 20 XX_DG420DT421:DA508DC509_YY X 420 ? Y 509 ? X 421 ? Y 508 ? 1 B DT 23 1_555 C DA 8 1_555 B DA 24 1_555 C DT 7 1_555 0.706 0.670 3.374 6.709 4.297 39.805 0.459 -0.225 3.493 6.235 -9.735 40.563 21 XX_DT421DA422:DT507DA508_YY X 421 ? Y 508 ? X 422 ? Y 507 ? 1 B DA 24 1_555 C DT 7 1_555 B DA 25 1_555 C DT 6 1_555 0.113 -0.670 3.339 -4.648 0.644 32.146 -1.312 -1.030 3.277 1.155 8.339 32.478 22 XX_DA422DA423:DT506DT507_YY X 422 ? Y 507 ? X 423 ? Y 506 ? 1 B DA 25 1_555 C DT 6 1_555 B DA 26 1_555 C DT 5 1_555 0.363 -0.965 3.099 -1.870 -1.804 26.060 -1.664 -1.285 3.124 -3.988 4.135 26.187 23 XX_DA423DA424:DT505DT506_YY X 423 ? Y 506 ? X 424 ? Y 505 ? 1 B DA 26 1_555 C DT 5 1_555 B DG 27 1_555 C DC 4 1_555 -1.332 -0.568 3.506 -2.761 4.263 34.692 -1.633 1.765 3.506 7.101 4.600 35.051 24 XX_DA424DG425:DC504DT505_YY X 424 ? Y 505 ? X 425 ? Y 504 ? 1 B DG 27 1_555 C DC 4 1_555 B DC 28 1_555 C DG 3 1_555 -0.246 -0.849 3.265 -3.394 3.068 33.685 -1.939 -0.116 3.186 5.263 5.823 33.985 25 XX_DG425DC426:DG503DC504_YY X 425 ? Y 504 ? X 426 ? Y 503 ? 1 B DC 28 1_555 C DG 3 1_555 B DG 29 1_555 C DC 2 1_555 0.808 0.248 3.176 0.962 5.358 37.954 -0.279 -1.112 3.199 8.187 -1.469 38.328 26 XX_DC426DG427:DC502DG503_YY X 426 ? Y 503 ? X 427 ? Y 502 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH #