HEADER LYASE 26-JUL-07 2QQD TITLE N47A MUTANT OF PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE FROM TITLE 2 METHANOCOCCUS JANNASHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE (EC 4.1.1.19) COMPND 3 (PVLARGDC); COMPND 4 CHAIN: A, D; COMPND 5 FRAGMENT: BETA SUBUNIT; COMPND 6 EC: 4.1.1.19; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE (EC 4.1.1.19) COMPND 11 (PVLARGDC); COMPND 12 CHAIN: B, E; COMPND 13 FRAGMENT: ALPHA SUBUNIT; COMPND 14 EC: 4.1.1.19; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE (EC 4.1.1.19) COMPND 18 (PVLARGDC); COMPND 19 CHAIN: C, F, G, H; COMPND 20 EC: 4.1.1.19; COMPND 21 ENGINEERED: YES; COMPND 22 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: PDAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 9 ORGANISM_TAXID: 2190; SOURCE 10 GENE: PDAD; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 15 ORGANISM_TAXID: 2190; SOURCE 16 GENE: PDAD; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARGININE DECARBOXYLASE, PYRUVOYL, DECARBOXYLATION, AUTOPROCESSING, KEYWDS 2 SERINOLYSIS, LYASE, PYRUVATE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.EALICK,E.S.SORIANO REVDAT 7 15-NOV-23 2QQD 1 LINK ATOM REVDAT 6 30-AUG-23 2QQD 1 REMARK REVDAT 5 20-OCT-21 2QQD 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 2QQD 1 VERSN REVDAT 3 01-APR-08 2QQD 1 JRNL REVDAT 2 25-MAR-08 2QQD 1 JRNL REVDAT 1 18-MAR-08 2QQD 0 JRNL AUTH E.V.SORIANO,D.E.MCCLOSKEY,C.KINSLAND,A.E.PEGG,S.E.EALICK JRNL TITL STRUCTURES OF THE N47A AND E109Q MUTANT PROTEINS OF JRNL TITL 2 PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE FROM METHANOCOCCUS JRNL TITL 3 JANNASCHII. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 377 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18391404 JRNL DOI 10.1107/S0907444908000474 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 371512.570 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 56234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5706 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7075 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 838 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.84000 REMARK 3 B22 (A**2) : 17.66000 REMARK 3 B33 (A**2) : -13.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.410 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.120 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 56.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PYRU.PARAM REMARK 3 PARAMETER FILE 4 : AG.PARAM REMARK 3 PARAMETER FILE 5 : MPD.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : PYRU.TOP REMARK 3 TOPOLOGY FILE 4 : AG.TOP REMARK 3 TOPOLOGY FILE 5 : MPD.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2QQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000043923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9760 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56234 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.04000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1N13 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-20% PEG 2000, 10% MPD, 2.5% REMARK 280 GLYCEROL, 0.1 M HEPES, 0.005 M BETA-OCTYLGLUCOSIDE, 0.005 M EDTA, REMARK 280 0.010 M DTT, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.12450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16190 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 5 REMARK 465 ASN A 6 REMARK 465 PRO A 7 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 ALA C 3 REMARK 465 GLU C 4 REMARK 465 ILE C 5 REMARK 465 ASN C 6 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 ALA F 3 REMARK 465 GLU F 4 REMARK 465 ILE F 5 REMARK 465 ASN F 6 REMARK 465 PRO F 7 REMARK 465 LEU F 8 REMARK 465 HIS F 9 REMARK 465 ALA F 10 REMARK 465 TYR F 11 REMARK 465 PHE F 12 REMARK 465 LYS F 13 REMARK 465 HIS G 0 REMARK 465 MET G 1 REMARK 465 ASN G 2 REMARK 465 ALA G 3 REMARK 465 GLU G 4 REMARK 465 ILE G 5 REMARK 465 ASN G 6 REMARK 465 PRO G 7 REMARK 465 LEU G 8 REMARK 465 HIS G 9 REMARK 465 ALA G 10 REMARK 465 TYR G 11 REMARK 465 PHE G 12 REMARK 465 LYS G 13 REMARK 465 HIS H 0 REMARK 465 MET H 1 REMARK 465 ASN H 2 REMARK 465 ALA H 3 REMARK 465 GLU H 4 REMARK 465 ILE H 5 REMARK 465 ASN H 6 REMARK 465 PRO H 7 REMARK 465 LEU H 8 REMARK 465 HIS H 9 REMARK 465 ALA H 10 REMARK 465 TYR H 11 REMARK 465 PHE H 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 LYS H 13 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 152 -46.66 -133.72 REMARK 500 LEU B 153 113.67 -161.49 REMARK 500 GLU C 58 15.75 59.70 REMARK 500 LYS C 152 -48.84 -138.77 REMARK 500 TRP C 163 -155.58 -143.70 REMARK 500 GLU E 58 -6.32 74.13 REMARK 500 GLU E 151 -63.59 -98.05 REMARK 500 LYS F 152 -50.52 -135.94 REMARK 500 GLU G 58 -9.03 75.04 REMARK 500 GLU G 151 -60.02 -92.04 REMARK 500 SER H 52 -91.05 -53.17 REMARK 500 SER H 53 59.16 -178.30 REMARK 500 LYS H 101 1.50 -62.84 REMARK 500 LYS H 152 -51.38 -134.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 B 671 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 A 671 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 53 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR E 53 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QQC RELATED DB: PDB DBREF 2QQD A 1 52 UNP Q57764 PDAD_METJA 1 52 DBREF 2QQD B 54 165 UNP Q57764 PDAD_METJA 54 165 DBREF 2QQD C 1 165 UNP Q57764 PDAD_METJA 1 165 DBREF 2QQD D 1 52 UNP Q57764 PDAD_METJA 1 52 DBREF 2QQD E 54 165 UNP Q57764 PDAD_METJA 54 165 DBREF 2QQD F 1 165 UNP Q57764 PDAD_METJA 1 165 DBREF 2QQD G 1 165 UNP Q57764 PDAD_METJA 1 165 DBREF 2QQD H 1 165 UNP Q57764 PDAD_METJA 1 165 SEQADV 2QQD HIS A 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQD ALA A 47 UNP Q57764 ASN 47 ENGINEERED MUTATION SEQADV 2QQD HIS C 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQD ALA C 47 UNP Q57764 ASN 47 ENGINEERED MUTATION SEQADV 2QQD HIS D 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQD ALA D 47 UNP Q57764 ASN 47 ENGINEERED MUTATION SEQADV 2QQD HIS F 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQD ALA F 47 UNP Q57764 ASN 47 ENGINEERED MUTATION SEQADV 2QQD HIS G 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQD ALA G 47 UNP Q57764 ASN 47 ENGINEERED MUTATION SEQADV 2QQD HIS H 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQD ALA H 47 UNP Q57764 ASN 47 ENGINEERED MUTATION SEQRES 1 A 53 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 A 53 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 A 53 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 A 53 LEU ASN ALA GLY ILE GLY ASN VAL ALA LEU ILE ARG ILE SEQRES 5 A 53 SER SEQRES 1 B 112 ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO LYS SEQRES 2 B 112 LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY TYR SEQRES 3 B 112 ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA ALA SEQRES 4 B 112 ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS GLY SEQRES 5 B 112 LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS LYS GLU SEQRES 6 B 112 ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY PHE SEQRES 7 B 112 GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER ILE SEQRES 8 B 112 ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA PHE SEQRES 9 B 112 ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 C 166 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 C 166 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 C 166 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 C 166 LEU ASN ALA GLY ILE GLY ASN VAL ALA LEU ILE ARG ILE SEQRES 5 C 166 SER SER ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU SEQRES 6 C 166 PRO LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR SEQRES 7 C 166 GLY TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER SEQRES 8 C 166 ALA ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU SEQRES 9 C 166 CYS GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS SEQRES 10 C 166 LYS GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE SEQRES 11 C 166 GLY PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SEQRES 12 C 166 SER ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS SEQRES 13 C 166 ALA PHE ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 D 53 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 D 53 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 D 53 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 D 53 LEU ASN ALA GLY ILE GLY ASN VAL ALA LEU ILE ARG ILE SEQRES 5 D 53 SER SEQRES 1 E 112 ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO LYS SEQRES 2 E 112 LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY TYR SEQRES 3 E 112 ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA ALA SEQRES 4 E 112 ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS GLY SEQRES 5 E 112 LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS LYS GLU SEQRES 6 E 112 ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY PHE SEQRES 7 E 112 GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER ILE SEQRES 8 E 112 ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA PHE SEQRES 9 E 112 ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 F 166 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 F 166 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 F 166 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 F 166 LEU ASN ALA GLY ILE GLY ASN VAL ALA LEU ILE ARG ILE SEQRES 5 F 166 SER SER ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU SEQRES 6 F 166 PRO LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR SEQRES 7 F 166 GLY TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER SEQRES 8 F 166 ALA ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU SEQRES 9 F 166 CYS GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS SEQRES 10 F 166 LYS GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE SEQRES 11 F 166 GLY PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SEQRES 12 F 166 SER ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS SEQRES 13 F 166 ALA PHE ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 G 166 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 G 166 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 G 166 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 G 166 LEU ASN ALA GLY ILE GLY ASN VAL ALA LEU ILE ARG ILE SEQRES 5 G 166 SER SER ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU SEQRES 6 G 166 PRO LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR SEQRES 7 G 166 GLY TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER SEQRES 8 G 166 ALA ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU SEQRES 9 G 166 CYS GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS SEQRES 10 G 166 LYS GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE SEQRES 11 G 166 GLY PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SEQRES 12 G 166 SER ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS SEQRES 13 G 166 ALA PHE ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 H 166 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 H 166 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 H 166 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 H 166 LEU ASN ALA GLY ILE GLY ASN VAL ALA LEU ILE ARG ILE SEQRES 5 H 166 SER SER ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU SEQRES 6 H 166 PRO LYS LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR SEQRES 7 H 166 GLY TYR ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER SEQRES 8 H 166 ALA ALA ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU SEQRES 9 H 166 CYS GLY LEU ILE MET GLU TYR GLU GLY LYS CYS SER LYS SEQRES 10 H 166 LYS GLU ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE SEQRES 11 H 166 GLY PHE GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SEQRES 12 H 166 SER ILE ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS SEQRES 13 H 166 ALA PHE ALA ALA ALA ALA LEU TRP TYR LYS HET AG2 A 671 9 HET AG2 B 671 9 HET PYR B 53 5 HET MPD C 700 8 HET MPD D 700 8 HET PYR E 53 5 HETNAM AG2 AGMATINE HETNAM PYR PYRUVIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 9 AG2 2(C5 H14 N4) FORMUL 11 PYR 2(C3 H4 O3) FORMUL 12 MPD 2(C6 H14 O2) FORMUL 15 HOH *335(H2 O) HELIX 1 1 THR A 29 GLY A 42 1 14 HELIX 2 2 SER B 115 GLY B 135 1 21 HELIX 3 3 HIS C 9 LYS C 13 5 5 HELIX 4 4 THR C 29 GLY C 42 1 14 HELIX 5 5 SER C 115 GLY C 135 1 21 HELIX 6 6 THR D 29 GLY D 42 1 14 HELIX 7 7 SER E 115 GLY E 135 1 21 HELIX 8 8 THR F 29 GLY F 42 1 14 HELIX 9 9 SER F 115 GLY F 135 1 21 HELIX 10 10 THR G 29 GLY G 42 1 14 HELIX 11 11 SER G 115 GLY G 135 1 21 HELIX 12 12 THR H 29 GLY H 42 1 14 HELIX 13 13 SER H 115 MET H 133 1 19 SHEET 1 A 5 ALA A 47 ARG A 50 0 SHEET 2 A 5 LEU B 72 SER B 82 1 O VAL B 73 N ALA A 47 SHEET 3 A 5 GLY B 154 TRP B 163 -1 O ALA B 160 N ALA B 76 SHEET 4 A 5 THR A 17 GLU A 26 -1 N VAL A 21 O ALA B 159 SHEET 5 A 5 GLU B 60 ILE B 61 1 O GLU B 60 N VAL A 18 SHEET 1 B 3 LEU B 106 GLY B 112 0 SHEET 2 B 3 THR B 88 PRO B 98 -1 N SER B 90 O GLY B 112 SHEET 3 B 3 LEU B 138 THR B 149 -1 O HIS B 148 N ILE B 89 SHEET 1 C 5 ALA C 47 ARG C 50 0 SHEET 2 C 5 LEU C 72 SER C 82 1 O THR C 75 N ILE C 49 SHEET 3 C 5 GLY C 154 TRP C 163 -1 O ALA C 160 N ALA C 76 SHEET 4 C 5 THR C 17 GLU C 26 -1 N GLY C 23 O PHE C 157 SHEET 5 C 5 GLU C 60 ILE C 61 1 O GLU C 60 N VAL C 18 SHEET 1 D 4 ILE C 54 MET C 55 0 SHEET 2 D 4 GLY C 105 GLY C 112 -1 O GLY C 105 N MET C 55 SHEET 3 D 4 THR C 88 PRO C 98 -1 N ALA C 96 O LEU C 106 SHEET 4 D 4 LEU C 138 THR C 149 -1 O ASP C 139 N ILE C 97 SHEET 1 E 5 ALA D 47 ARG D 50 0 SHEET 2 E 5 LEU E 72 SER E 82 1 O VAL E 73 N ALA D 47 SHEET 3 E 5 GLY E 154 TRP E 163 -1 O ALA E 160 N ALA E 76 SHEET 4 E 5 THR D 17 GLU D 26 -1 N VAL D 21 O ALA E 159 SHEET 5 E 5 GLU E 60 ILE E 61 1 O GLU E 60 N VAL D 18 SHEET 1 F 3 LEU E 106 GLY E 112 0 SHEET 2 F 3 THR E 88 PRO E 98 -1 N ALA E 96 O LEU E 106 SHEET 3 F 3 LEU E 138 THR E 149 -1 O GLU E 142 N VAL E 95 SHEET 1 G 5 ALA F 47 ARG F 50 0 SHEET 2 G 5 LEU F 72 SER F 82 1 O THR F 75 N ILE F 49 SHEET 3 G 5 GLY F 154 TRP F 163 -1 O GLY F 154 N SER F 82 SHEET 4 G 5 THR F 17 GLU F 26 -1 N VAL F 21 O ALA F 159 SHEET 5 G 5 GLU F 60 ILE F 61 1 O GLU F 60 N VAL F 18 SHEET 1 H 4 ILE F 54 MET F 55 0 SHEET 2 H 4 GLY F 105 GLY F 112 -1 O GLY F 105 N MET F 55 SHEET 3 H 4 THR F 88 PRO F 98 -1 N ALA F 92 O TYR F 110 SHEET 4 H 4 LEU F 138 THR F 149 -1 O GLU F 142 N VAL F 95 SHEET 1 I 5 ALA G 47 ARG G 50 0 SHEET 2 I 5 LEU G 72 SER G 82 1 O THR G 75 N ILE G 49 SHEET 3 I 5 GLY G 154 TRP G 163 -1 O ALA G 160 N ALA G 76 SHEET 4 I 5 THR G 17 GLU G 26 -1 N GLY G 23 O PHE G 157 SHEET 5 I 5 GLU G 60 ILE G 61 1 O GLU G 60 N VAL G 18 SHEET 1 J 4 ILE G 54 MET G 55 0 SHEET 2 J 4 GLY G 105 GLY G 112 -1 O GLY G 105 N MET G 55 SHEET 3 J 4 THR G 88 PRO G 98 -1 N ALA G 92 O TYR G 110 SHEET 4 J 4 LEU G 138 THR G 149 -1 O HIS G 148 N ILE G 89 SHEET 1 K 5 ALA H 47 ARG H 50 0 SHEET 2 K 5 LEU H 72 SER H 82 1 O VAL H 73 N ALA H 47 SHEET 3 K 5 GLY H 154 TRP H 163 -1 O LEU H 162 N PRO H 74 SHEET 4 K 5 THR H 17 GLU H 26 -1 N VAL H 21 O ALA H 159 SHEET 5 K 5 GLU H 60 ILE H 61 1 O GLU H 60 N VAL H 18 SHEET 1 L 4 ILE H 54 MET H 55 0 SHEET 2 L 4 GLY H 105 GLY H 112 -1 O GLY H 105 N MET H 55 SHEET 3 L 4 THR H 88 PRO H 98 -1 N ALA H 92 O TYR H 110 SHEET 4 L 4 LEU H 138 THR H 149 -1 O HIS H 148 N ILE H 89 LINK C PYR B 53 N ILE B 54 1555 1555 1.33 LINK C PYR E 53 N ILE E 54 1555 1555 1.33 SITE 1 AC1 11 SER A 52 HOH A 689 ILE B 54 ILE B 107 SITE 2 AC1 11 MET B 108 GLU B 109 LEU C 31 PHE C 34 SITE 3 AC1 11 ASP C 35 LEU C 38 GLY C 44 SITE 1 AC2 10 LEU A 31 PHE A 34 ASP A 35 LEU A 38 SITE 2 AC2 10 GLY A 44 SER D 52 ILE E 54 ILE E 107 SITE 3 AC2 10 GLU E 109 ARG E 134 SITE 1 AC3 4 ILE A 51 ILE B 54 LEU B 106 ILE B 107 SITE 1 AC4 5 ILE D 51 SER D 52 ILE E 54 LEU E 106 SITE 2 AC4 5 ILE E 107 SITE 1 AC5 4 HOH A 689 LEU C 31 PHE C 34 TYR C 79 SITE 1 AC6 6 LEU A 31 PHE A 34 TYR B 79 ARG D 50 SITE 2 AC6 6 SER D 52 HOH D 732 CRYST1 57.720 92.249 86.093 90.00 94.89 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017325 0.000000 0.001482 0.00000 SCALE2 0.000000 0.010840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011658 0.00000