data_2QRR # _entry.id 2QRR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QRR RCSB RCSB043972 WWPDB D_1000043972 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC91258.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QRR _pdbx_database_status.recvd_initial_deposition_date 2007-07-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Zhou, M.' 2 'Freeman, L.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The Soluble Domain of the ABC Transporter, ATP-binding Protein from Vibrio parahaemolyticus.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Zhou, M.' 2 primary 'Freeman, L.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2QRR _cell.length_a 103.134 _cell.length_b 47.780 _cell.length_c 53.347 _cell.angle_alpha 90.00 _cell.angle_beta 118.48 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QRR _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methionine import ATP-binding protein metN' 11391.136 2 3.6.3.- ? 'Residues 247-344' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 128 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNALSIPEDYQARLQPNRVEGSYPLVR(MSE)EFTGATVDAPL(MSE)SQISRKYNIDVSILSSDLDYAGGVKFG(MSE) (MSE)VAELFGNEQDDSAAIEYLRENNVKVEVLGYVL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNALSIPEDYQARLQPNRVEGSYPLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDD SAAIEYLRENNVKVEVLGYVL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC91258.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 LEU n 1 5 SER n 1 6 ILE n 1 7 PRO n 1 8 GLU n 1 9 ASP n 1 10 TYR n 1 11 GLN n 1 12 ALA n 1 13 ARG n 1 14 LEU n 1 15 GLN n 1 16 PRO n 1 17 ASN n 1 18 ARG n 1 19 VAL n 1 20 GLU n 1 21 GLY n 1 22 SER n 1 23 TYR n 1 24 PRO n 1 25 LEU n 1 26 VAL n 1 27 ARG n 1 28 MSE n 1 29 GLU n 1 30 PHE n 1 31 THR n 1 32 GLY n 1 33 ALA n 1 34 THR n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 PRO n 1 39 LEU n 1 40 MSE n 1 41 SER n 1 42 GLN n 1 43 ILE n 1 44 SER n 1 45 ARG n 1 46 LYS n 1 47 TYR n 1 48 ASN n 1 49 ILE n 1 50 ASP n 1 51 VAL n 1 52 SER n 1 53 ILE n 1 54 LEU n 1 55 SER n 1 56 SER n 1 57 ASP n 1 58 LEU n 1 59 ASP n 1 60 TYR n 1 61 ALA n 1 62 GLY n 1 63 GLY n 1 64 VAL n 1 65 LYS n 1 66 PHE n 1 67 GLY n 1 68 MSE n 1 69 MSE n 1 70 VAL n 1 71 ALA n 1 72 GLU n 1 73 LEU n 1 74 PHE n 1 75 GLY n 1 76 ASN n 1 77 GLU n 1 78 GLN n 1 79 ASP n 1 80 ASP n 1 81 SER n 1 82 ALA n 1 83 ALA n 1 84 ILE n 1 85 GLU n 1 86 TYR n 1 87 LEU n 1 88 ARG n 1 89 GLU n 1 90 ASN n 1 91 ASN n 1 92 VAL n 1 93 LYS n 1 94 VAL n 1 95 GLU n 1 96 VAL n 1 97 LEU n 1 98 GLY n 1 99 TYR n 1 100 VAL n 1 101 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Vibrio _entity_src_gen.pdbx_gene_src_gene 'metN, VP0706' _entity_src_gen.gene_src_species 'Vibrio parahaemolyticus' _entity_src_gen.gene_src_strain 'RIMD 2210633' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio parahaemolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223926 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code METN_VIBPA _struct_ref.pdbx_db_accession Q87RS1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LSIPEDYQARLQPNRVEGSYPLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAA IEYLREHNVKVEVLGYVL ; _struct_ref.pdbx_align_begin 247 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QRR A 4 ? 101 ? Q87RS1 247 ? 344 ? 1 98 2 1 2QRR B 4 ? 101 ? Q87RS1 247 ? 344 ? 1 98 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QRR SER A 1 ? UNP Q87RS1 ? ? 'EXPRESSION TAG' -2 1 1 2QRR ASN A 2 ? UNP Q87RS1 ? ? 'EXPRESSION TAG' -1 2 1 2QRR ALA A 3 ? UNP Q87RS1 ? ? 'EXPRESSION TAG' 0 3 1 2QRR ASN A 90 ? UNP Q87RS1 HIS 333 'SEE REMARK 999' 87 4 2 2QRR SER B 1 ? UNP Q87RS1 ? ? 'EXPRESSION TAG' -2 5 2 2QRR ASN B 2 ? UNP Q87RS1 ? ? 'EXPRESSION TAG' -1 6 2 2QRR ALA B 3 ? UNP Q87RS1 ? ? 'EXPRESSION TAG' 0 7 2 2QRR ASN B 90 ? UNP Q87RS1 HIS 333 'SEE REMARK 999' 87 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QRR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '2.4 M Ammonium phosphate dibasic, 0.1 M Tris-HCl pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-06-27 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal, Si111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97940 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97940 # _reflns.entry_id 2QRR _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 46.88 _reflns.number_all 23458 _reflns.number_obs 23458 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.121 _reflns.pdbx_netI_over_sigmaI 10.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 89.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.365 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2186 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QRR _refine.ls_number_reflns_obs 21072 _refine.ls_number_reflns_all 21072 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.88 _refine.ls_d_res_high 1.71 _refine.ls_percent_reflns_obs 94.30 _refine.ls_R_factor_obs 0.203 _refine.ls_R_factor_all 0.203 _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.240 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 2383 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 30.868 _refine.aniso_B[1][1] 0.95 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.65 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.31 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.126 _refine.pdbx_overall_ESU_R_Free 0.124 _refine.overall_SU_ML 0.069 _refine.overall_SU_B 4.153 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1526 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 1655 _refine_hist.d_res_high 1.71 _refine_hist.d_res_low 46.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1632 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.680 1.982 ? 2222 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.012 5.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.324 25.422 ? 83 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.498 15.000 ? 281 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 25.232 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.124 0.200 ? 243 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1288 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.226 0.200 ? 671 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.313 0.200 ? 1137 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.187 0.200 ? 110 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.170 0.200 ? 23 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.237 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.421 1.500 ? 1054 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.849 2.000 ? 1656 'X-RAY DIFFRACTION' ? r_scbond_it 3.404 3.000 ? 656 'X-RAY DIFFRACTION' ? r_scangle_it 4.894 4.500 ? 566 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.710 _refine_ls_shell.d_res_low 1.754 _refine_ls_shell.number_reflns_R_work 1115 _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.percent_reflns_obs 68.79 _refine_ls_shell.R_factor_R_free 0.236 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 126 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1258 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QRR _struct.title 'Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus' _struct.pdbx_descriptor 'Methionine import ATP-binding protein metN (E.C.3.6.3.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QRR _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;alpha-beta structure, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Amino-acid transport, ATP-binding, Hydrolase, Inner membrane, Membrane, Nucleotide-binding, Transport ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 7 ? ARG A 13 ? PRO A 4 ARG A 10 1 ? 7 HELX_P HELX_P2 2 PRO A 38 ? TYR A 47 ? PRO A 35 TYR A 44 1 ? 10 HELX_P HELX_P3 3 ASN A 76 ? ASN A 90 ? ASN A 73 ASN A 87 1 ? 15 HELX_P HELX_P4 4 PRO B 7 ? ARG B 13 ? PRO B 4 ARG B 10 1 ? 7 HELX_P HELX_P5 5 PRO B 38 ? TYR B 47 ? PRO B 35 TYR B 44 1 ? 10 HELX_P HELX_P6 6 ASN B 76 ? ASN B 90 ? ASN B 73 ASN B 87 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 27 C ? ? ? 1_555 A MSE 28 N ? ? A ARG 24 A MSE 25 1_555 ? ? ? ? ? ? ? 1.339 ? covale2 covale ? ? A MSE 28 C ? ? ? 1_555 A GLU 29 N ? ? A MSE 25 A GLU 26 1_555 ? ? ? ? ? ? ? 1.345 ? covale3 covale ? ? A LEU 39 C ? ? ? 1_555 A MSE 40 N ? ? A LEU 36 A MSE 37 1_555 ? ? ? ? ? ? ? 1.345 ? covale4 covale ? ? A MSE 40 C ? ? ? 1_555 A SER 41 N ? ? A MSE 37 A SER 38 1_555 ? ? ? ? ? ? ? 1.339 ? covale5 covale ? ? A GLY 67 C ? ? ? 1_555 A MSE 68 N ? ? A GLY 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 68 C ? ? ? 1_555 A MSE 69 N ? ? A MSE 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.322 ? covale7 covale ? ? A MSE 69 C ? ? ? 1_555 A VAL 70 N ? ? A MSE 66 A VAL 67 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? B ARG 27 C ? ? ? 1_555 B MSE 28 N ? ? B ARG 24 B MSE 25 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? B MSE 28 C ? ? ? 1_555 B GLU 29 N ? ? B MSE 25 B GLU 26 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? B LEU 39 C ? ? ? 1_555 B MSE 40 N ? ? B LEU 36 B MSE 37 1_555 ? ? ? ? ? ? ? 1.321 ? covale11 covale ? ? B MSE 40 C ? ? ? 1_555 B SER 41 N ? ? B MSE 37 B SER 38 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale ? ? B GLY 67 C ? ? ? 1_555 B MSE 68 N ? ? B GLY 64 B MSE 65 1_555 ? ? ? ? ? ? ? 1.338 ? covale13 covale ? ? B MSE 68 C ? ? ? 1_555 B MSE 69 N ? ? B MSE 65 B MSE 66 1_555 ? ? ? ? ? ? ? 1.323 ? covale14 covale ? ? B MSE 69 C ? ? ? 1_555 B VAL 70 N ? ? B MSE 66 B VAL 67 1_555 ? ? ? ? ? ? ? 1.344 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 14 ? GLN A 15 ? LEU A 11 GLN A 12 A 2 LYS A 93 ? VAL A 100 ? LYS A 90 VAL A 97 A 3 TYR A 23 ? PHE A 30 ? TYR A 20 PHE A 27 A 4 VAL A 64 ? PHE A 74 ? VAL A 61 PHE A 71 A 5 ASP A 50 ? ALA A 61 ? ASP A 47 ALA A 58 A 6 ASP B 50 ? ALA B 61 ? ASP B 47 ALA B 58 A 7 VAL B 64 ? PHE B 74 ? VAL B 61 PHE B 71 A 8 TYR B 23 ? PHE B 30 ? TYR B 20 PHE B 27 A 9 LYS B 93 ? VAL B 100 ? LYS B 90 VAL B 97 A 10 LEU B 14 ? GLN B 15 ? LEU B 11 GLN B 12 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 15 ? N GLN A 12 O TYR A 99 ? O TYR A 96 A 2 3 O VAL A 100 ? O VAL A 97 N TYR A 23 ? N TYR A 20 A 3 4 N MSE A 28 ? N MSE A 25 O MSE A 69 ? O MSE A 66 A 4 5 O GLU A 72 ? O GLU A 69 N SER A 52 ? N SER A 49 A 5 6 N SER A 56 ? N SER A 53 O LEU B 58 ? O LEU B 55 A 6 7 N SER B 52 ? N SER B 49 O GLU B 72 ? O GLU B 69 A 7 8 O GLY B 67 ? O GLY B 64 N PHE B 30 ? N PHE B 27 A 8 9 N TYR B 23 ? N TYR B 20 O VAL B 100 ? O VAL B 97 A 9 10 O TYR B 99 ? O TYR B 96 N GLN B 15 ? N GLN B 12 # _database_PDB_matrix.entry_id 2QRR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QRR _atom_sites.fract_transf_matrix[1][1] 0.009696 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005260 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020929 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021326 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 LEU 4 1 ? ? ? A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 ILE 6 3 3 ILE ILE A . n A 1 7 PRO 7 4 4 PRO PRO A . n A 1 8 GLU 8 5 5 GLU GLU A . n A 1 9 ASP 9 6 6 ASP ASP A . n A 1 10 TYR 10 7 7 TYR TYR A . n A 1 11 GLN 11 8 8 GLN GLN A . n A 1 12 ALA 12 9 9 ALA ALA A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 GLN 15 12 12 GLN GLN A . n A 1 16 PRO 16 13 13 PRO PRO A . n A 1 17 ASN 17 14 14 ASN ASN A . n A 1 18 ARG 18 15 15 ARG ARG A . n A 1 19 VAL 19 16 16 VAL VAL A . n A 1 20 GLU 20 17 17 GLU GLU A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 SER 22 19 19 SER SER A . n A 1 23 TYR 23 20 20 TYR TYR A . n A 1 24 PRO 24 21 21 PRO PRO A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 VAL 26 23 23 VAL VAL A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 MSE 28 25 25 MSE MSE A . n A 1 29 GLU 29 26 26 GLU GLU A . n A 1 30 PHE 30 27 27 PHE PHE A . n A 1 31 THR 31 28 28 THR THR A . n A 1 32 GLY 32 29 29 GLY GLY A . n A 1 33 ALA 33 30 30 ALA ALA A . n A 1 34 THR 34 31 31 THR THR A . n A 1 35 VAL 35 32 32 VAL VAL A . n A 1 36 ASP 36 33 33 ASP ASP A . n A 1 37 ALA 37 34 34 ALA ALA A . n A 1 38 PRO 38 35 35 PRO PRO A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 MSE 40 37 37 MSE MSE A . n A 1 41 SER 41 38 38 SER SER A . n A 1 42 GLN 42 39 39 GLN GLN A . n A 1 43 ILE 43 40 40 ILE ILE A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 ARG 45 42 42 ARG ARG A . n A 1 46 LYS 46 43 43 LYS LYS A . n A 1 47 TYR 47 44 44 TYR TYR A . n A 1 48 ASN 48 45 45 ASN ASN A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 VAL 51 48 48 VAL VAL A . n A 1 52 SER 52 49 49 SER SER A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 LEU 54 51 51 LEU LEU A . n A 1 55 SER 55 52 52 SER SER A . n A 1 56 SER 56 53 53 SER SER A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 ASP 59 56 56 ASP ASP A . n A 1 60 TYR 60 57 57 TYR TYR A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 GLY 62 59 59 GLY GLY A . n A 1 63 GLY 63 60 60 GLY GLY A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 LYS 65 62 62 LYS LYS A . n A 1 66 PHE 66 63 63 PHE PHE A . n A 1 67 GLY 67 64 64 GLY GLY A . n A 1 68 MSE 68 65 65 MSE MSE A . n A 1 69 MSE 69 66 66 MSE MSE A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 ALA 71 68 68 ALA ALA A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 GLY 75 72 72 GLY GLY A . n A 1 76 ASN 76 73 73 ASN ASN A . n A 1 77 GLU 77 74 74 GLU GLU A . n A 1 78 GLN 78 75 75 GLN GLN A . n A 1 79 ASP 79 76 76 ASP ASP A . n A 1 80 ASP 80 77 77 ASP ASP A . n A 1 81 SER 81 78 78 SER SER A . n A 1 82 ALA 82 79 79 ALA ALA A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 ILE 84 81 81 ILE ILE A . n A 1 85 GLU 85 82 82 GLU GLU A . n A 1 86 TYR 86 83 83 TYR TYR A . n A 1 87 LEU 87 84 84 LEU LEU A . n A 1 88 ARG 88 85 85 ARG ARG A . n A 1 89 GLU 89 86 86 GLU GLU A . n A 1 90 ASN 90 87 87 ASN ASN A . n A 1 91 ASN 91 88 88 ASN ASN A . n A 1 92 VAL 92 89 89 VAL VAL A . n A 1 93 LYS 93 90 90 LYS LYS A . n A 1 94 VAL 94 91 91 VAL VAL A . n A 1 95 GLU 95 92 92 GLU GLU A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 LEU 97 94 94 LEU LEU A . n A 1 98 GLY 98 95 95 GLY GLY A . n A 1 99 TYR 99 96 96 TYR TYR A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 LEU 101 98 98 LEU LEU A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 LEU 4 1 1 LEU LEU B . n B 1 5 SER 5 2 2 SER SER B . n B 1 6 ILE 6 3 3 ILE ILE B . n B 1 7 PRO 7 4 4 PRO PRO B . n B 1 8 GLU 8 5 5 GLU GLU B . n B 1 9 ASP 9 6 6 ASP ASP B . n B 1 10 TYR 10 7 7 TYR TYR B . n B 1 11 GLN 11 8 8 GLN GLN B . n B 1 12 ALA 12 9 9 ALA ALA B . n B 1 13 ARG 13 10 10 ARG ARG B . n B 1 14 LEU 14 11 11 LEU LEU B . n B 1 15 GLN 15 12 12 GLN GLN B . n B 1 16 PRO 16 13 13 PRO PRO B . n B 1 17 ASN 17 14 14 ASN ASN B . n B 1 18 ARG 18 15 15 ARG ARG B . n B 1 19 VAL 19 16 16 VAL VAL B . n B 1 20 GLU 20 17 17 GLU GLU B . n B 1 21 GLY 21 18 18 GLY GLY B . n B 1 22 SER 22 19 19 SER SER B . n B 1 23 TYR 23 20 20 TYR TYR B . n B 1 24 PRO 24 21 21 PRO PRO B . n B 1 25 LEU 25 22 22 LEU LEU B . n B 1 26 VAL 26 23 23 VAL VAL B . n B 1 27 ARG 27 24 24 ARG ARG B . n B 1 28 MSE 28 25 25 MSE MSE B . n B 1 29 GLU 29 26 26 GLU GLU B . n B 1 30 PHE 30 27 27 PHE PHE B . n B 1 31 THR 31 28 28 THR THR B . n B 1 32 GLY 32 29 29 GLY GLY B . n B 1 33 ALA 33 30 30 ALA ALA B . n B 1 34 THR 34 31 31 THR THR B . n B 1 35 VAL 35 32 32 VAL VAL B . n B 1 36 ASP 36 33 33 ASP ASP B . n B 1 37 ALA 37 34 34 ALA ALA B . n B 1 38 PRO 38 35 35 PRO PRO B . n B 1 39 LEU 39 36 36 LEU LEU B . n B 1 40 MSE 40 37 37 MSE MSE B . n B 1 41 SER 41 38 38 SER SER B . n B 1 42 GLN 42 39 39 GLN GLN B . n B 1 43 ILE 43 40 40 ILE ILE B . n B 1 44 SER 44 41 41 SER SER B . n B 1 45 ARG 45 42 42 ARG ARG B . n B 1 46 LYS 46 43 43 LYS LYS B . n B 1 47 TYR 47 44 44 TYR TYR B . n B 1 48 ASN 48 45 45 ASN ASN B . n B 1 49 ILE 49 46 46 ILE ILE B . n B 1 50 ASP 50 47 47 ASP ASP B . n B 1 51 VAL 51 48 48 VAL VAL B . n B 1 52 SER 52 49 49 SER SER B . n B 1 53 ILE 53 50 50 ILE ILE B . n B 1 54 LEU 54 51 51 LEU LEU B . n B 1 55 SER 55 52 52 SER SER B . n B 1 56 SER 56 53 53 SER SER B . n B 1 57 ASP 57 54 54 ASP ASP B . n B 1 58 LEU 58 55 55 LEU LEU B . n B 1 59 ASP 59 56 56 ASP ASP B . n B 1 60 TYR 60 57 57 TYR TYR B . n B 1 61 ALA 61 58 58 ALA ALA B . n B 1 62 GLY 62 59 59 GLY GLY B . n B 1 63 GLY 63 60 60 GLY GLY B . n B 1 64 VAL 64 61 61 VAL VAL B . n B 1 65 LYS 65 62 62 LYS LYS B . n B 1 66 PHE 66 63 63 PHE PHE B . n B 1 67 GLY 67 64 64 GLY GLY B . n B 1 68 MSE 68 65 65 MSE MSE B . n B 1 69 MSE 69 66 66 MSE MSE B . n B 1 70 VAL 70 67 67 VAL VAL B . n B 1 71 ALA 71 68 68 ALA ALA B . n B 1 72 GLU 72 69 69 GLU GLU B . n B 1 73 LEU 73 70 70 LEU LEU B . n B 1 74 PHE 74 71 71 PHE PHE B . n B 1 75 GLY 75 72 72 GLY GLY B . n B 1 76 ASN 76 73 73 ASN ASN B . n B 1 77 GLU 77 74 74 GLU GLU B . n B 1 78 GLN 78 75 75 GLN GLN B . n B 1 79 ASP 79 76 76 ASP ASP B . n B 1 80 ASP 80 77 77 ASP ASP B . n B 1 81 SER 81 78 78 SER SER B . n B 1 82 ALA 82 79 79 ALA ALA B . n B 1 83 ALA 83 80 80 ALA ALA B . n B 1 84 ILE 84 81 81 ILE ILE B . n B 1 85 GLU 85 82 82 GLU GLU B . n B 1 86 TYR 86 83 83 TYR TYR B . n B 1 87 LEU 87 84 84 LEU LEU B . n B 1 88 ARG 88 85 85 ARG ARG B . n B 1 89 GLU 89 86 86 GLU GLU B . n B 1 90 ASN 90 87 87 ASN ASN B . n B 1 91 ASN 91 88 88 ASN ASN B . n B 1 92 VAL 92 89 89 VAL VAL B . n B 1 93 LYS 93 90 90 LYS LYS B . n B 1 94 VAL 94 91 91 VAL VAL B . n B 1 95 GLU 95 92 92 GLU GLU B . n B 1 96 VAL 96 93 93 VAL VAL B . n B 1 97 LEU 97 94 94 LEU LEU B . n B 1 98 GLY 98 95 95 GLY GLY B . n B 1 99 TYR 99 96 96 TYR TYR B . n B 1 100 VAL 100 97 97 VAL VAL B . n B 1 101 LEU 101 98 98 LEU LEU B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 99 1 CL CL B . D 3 HOH 1 99 1 HOH HOH A . D 3 HOH 2 100 2 HOH HOH A . D 3 HOH 3 101 3 HOH HOH A . D 3 HOH 4 102 4 HOH HOH A . D 3 HOH 5 103 8 HOH HOH A . D 3 HOH 6 104 11 HOH HOH A . D 3 HOH 7 105 13 HOH HOH A . D 3 HOH 8 106 14 HOH HOH A . D 3 HOH 9 107 15 HOH HOH A . D 3 HOH 10 108 16 HOH HOH A . D 3 HOH 11 109 17 HOH HOH A . D 3 HOH 12 110 18 HOH HOH A . D 3 HOH 13 111 19 HOH HOH A . D 3 HOH 14 112 23 HOH HOH A . D 3 HOH 15 113 24 HOH HOH A . D 3 HOH 16 114 32 HOH HOH A . D 3 HOH 17 115 33 HOH HOH A . D 3 HOH 18 116 36 HOH HOH A . D 3 HOH 19 117 37 HOH HOH A . D 3 HOH 20 118 38 HOH HOH A . D 3 HOH 21 119 41 HOH HOH A . D 3 HOH 22 120 42 HOH HOH A . D 3 HOH 23 121 46 HOH HOH A . D 3 HOH 24 122 49 HOH HOH A . D 3 HOH 25 123 51 HOH HOH A . D 3 HOH 26 124 52 HOH HOH A . D 3 HOH 27 125 55 HOH HOH A . D 3 HOH 28 126 58 HOH HOH A . D 3 HOH 29 127 59 HOH HOH A . D 3 HOH 30 128 63 HOH HOH A . D 3 HOH 31 129 67 HOH HOH A . D 3 HOH 32 130 68 HOH HOH A . D 3 HOH 33 131 69 HOH HOH A . D 3 HOH 34 132 71 HOH HOH A . D 3 HOH 35 133 76 HOH HOH A . D 3 HOH 36 134 78 HOH HOH A . D 3 HOH 37 135 79 HOH HOH A . D 3 HOH 38 136 80 HOH HOH A . D 3 HOH 39 137 81 HOH HOH A . D 3 HOH 40 138 82 HOH HOH A . D 3 HOH 41 139 87 HOH HOH A . D 3 HOH 42 140 88 HOH HOH A . D 3 HOH 43 141 89 HOH HOH A . D 3 HOH 44 142 91 HOH HOH A . D 3 HOH 45 143 93 HOH HOH A . D 3 HOH 46 144 95 HOH HOH A . D 3 HOH 47 145 98 HOH HOH A . D 3 HOH 48 146 100 HOH HOH A . D 3 HOH 49 147 101 HOH HOH A . D 3 HOH 50 148 102 HOH HOH A . D 3 HOH 51 149 104 HOH HOH A . D 3 HOH 52 150 109 HOH HOH A . D 3 HOH 53 151 110 HOH HOH A . D 3 HOH 54 152 111 HOH HOH A . D 3 HOH 55 153 112 HOH HOH A . D 3 HOH 56 154 113 HOH HOH A . D 3 HOH 57 155 115 HOH HOH A . D 3 HOH 58 156 116 HOH HOH A . D 3 HOH 59 157 123 HOH HOH A . D 3 HOH 60 158 125 HOH HOH A . D 3 HOH 61 159 126 HOH HOH A . D 3 HOH 62 160 128 HOH HOH A . E 3 HOH 1 100 5 HOH HOH B . E 3 HOH 2 101 6 HOH HOH B . E 3 HOH 3 102 7 HOH HOH B . E 3 HOH 4 103 9 HOH HOH B . E 3 HOH 5 104 10 HOH HOH B . E 3 HOH 6 105 12 HOH HOH B . E 3 HOH 7 106 20 HOH HOH B . E 3 HOH 8 107 21 HOH HOH B . E 3 HOH 9 108 22 HOH HOH B . E 3 HOH 10 109 25 HOH HOH B . E 3 HOH 11 110 26 HOH HOH B . E 3 HOH 12 111 27 HOH HOH B . E 3 HOH 13 112 28 HOH HOH B . E 3 HOH 14 113 29 HOH HOH B . E 3 HOH 15 114 30 HOH HOH B . E 3 HOH 16 115 31 HOH HOH B . E 3 HOH 17 116 34 HOH HOH B . E 3 HOH 18 117 35 HOH HOH B . E 3 HOH 19 118 39 HOH HOH B . E 3 HOH 20 119 40 HOH HOH B . E 3 HOH 21 120 43 HOH HOH B . E 3 HOH 22 121 44 HOH HOH B . E 3 HOH 23 122 45 HOH HOH B . E 3 HOH 24 123 47 HOH HOH B . E 3 HOH 25 124 48 HOH HOH B . E 3 HOH 26 125 50 HOH HOH B . E 3 HOH 27 126 53 HOH HOH B . E 3 HOH 28 127 54 HOH HOH B . E 3 HOH 29 128 56 HOH HOH B . E 3 HOH 30 129 57 HOH HOH B . E 3 HOH 31 130 60 HOH HOH B . E 3 HOH 32 131 61 HOH HOH B . E 3 HOH 33 132 62 HOH HOH B . E 3 HOH 34 133 64 HOH HOH B . E 3 HOH 35 134 65 HOH HOH B . E 3 HOH 36 135 66 HOH HOH B . E 3 HOH 37 136 70 HOH HOH B . E 3 HOH 38 137 72 HOH HOH B . E 3 HOH 39 138 73 HOH HOH B . E 3 HOH 40 139 74 HOH HOH B . E 3 HOH 41 140 75 HOH HOH B . E 3 HOH 42 141 77 HOH HOH B . E 3 HOH 43 142 83 HOH HOH B . E 3 HOH 44 143 84 HOH HOH B . E 3 HOH 45 144 85 HOH HOH B . E 3 HOH 46 145 86 HOH HOH B . E 3 HOH 47 146 90 HOH HOH B . E 3 HOH 48 147 92 HOH HOH B . E 3 HOH 49 148 94 HOH HOH B . E 3 HOH 50 149 96 HOH HOH B . E 3 HOH 51 150 97 HOH HOH B . E 3 HOH 52 151 99 HOH HOH B . E 3 HOH 53 152 103 HOH HOH B . E 3 HOH 54 153 105 HOH HOH B . E 3 HOH 55 154 106 HOH HOH B . E 3 HOH 56 155 107 HOH HOH B . E 3 HOH 57 156 108 HOH HOH B . E 3 HOH 58 157 114 HOH HOH B . E 3 HOH 59 158 117 HOH HOH B . E 3 HOH 60 159 118 HOH HOH B . E 3 HOH 61 160 119 HOH HOH B . E 3 HOH 62 161 120 HOH HOH B . E 3 HOH 63 162 121 HOH HOH B . E 3 HOH 64 163 122 HOH HOH B . E 3 HOH 65 164 124 HOH HOH B . E 3 HOH 66 165 127 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 28 A MSE 25 ? MET SELENOMETHIONINE 2 A MSE 40 A MSE 37 ? MET SELENOMETHIONINE 3 A MSE 68 A MSE 65 ? MET SELENOMETHIONINE 4 A MSE 69 A MSE 66 ? MET SELENOMETHIONINE 5 B MSE 28 B MSE 25 ? MET SELENOMETHIONINE 6 B MSE 40 B MSE 37 ? MET SELENOMETHIONINE 7 B MSE 68 B MSE 65 ? MET SELENOMETHIONINE 8 B MSE 69 B MSE 66 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 2080 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 16.6014 13.5029 1.3356 -0.0525 -0.0310 -0.0091 -0.0013 -0.0119 -0.0112 1.0572 1.7285 1.1022 0.0790 -0.8640 -0.0203 0.0300 0.0675 -0.0620 -0.0407 -0.0899 -0.0334 -0.0018 -0.0439 0.0599 'X-RAY DIFFRACTION' 2 ? refined 9.0931 25.1532 15.1683 -0.0209 -0.0335 -0.0270 0.0243 -0.0240 -0.0055 0.3440 1.0252 2.0790 -0.1505 -0.4300 0.2511 0.0657 -0.0222 -0.0269 0.0211 -0.1292 0.0110 -0.1924 -0.1488 0.0635 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 A 5 A 98 A 101 ? 'X-RAY DIFFRACTION' ? 2 2 B 1 B 4 B 98 B 101 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data collection' . ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 HKL-3000 phasing . ? 6 SHELXCD phasing . ? 7 SHELXE 'model building' . ? 8 MLPHARE phasing . ? 9 RESOLVE phasing . ? 10 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE AUTHORS CONFIRM THE PRESENCE OF ASN RESIDUE AT THE SEQUENCE POSITION 333 (RESIDUE NUMBER 87 IN COORDINATES) AND STATE THAT IT IS UNCLEAR WHETHER IT IS A MISTAKE FROM PCR OR A MISTAKE IN ORIGINAL SEQUENCING (IN SEQUENCE ANNOTATION IN THE UNIPROT DATABASE). ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NE2 A GLN 12 ? ? O A HOH 160 ? ? 2.14 2 1 NH2 A ARG 15 ? ? OD2 A ASP 77 ? ? 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 54 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id B _pdbx_validate_torsion.phi -146.47 _pdbx_validate_torsion.psi 32.41 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A LEU 1 ? A LEU 4 5 1 Y 1 B SER -2 ? B SER 1 6 1 Y 1 B ASN -1 ? B ASN 2 7 1 Y 1 B ALA 0 ? B ALA 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #