data_2QS6 # _entry.id 2QS6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QS6 pdb_00002qs6 10.2210/pdb2qs6/pdb NDB UD0077 ? ? RCSB RCSB043987 ? ? WWPDB D_1000043987 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2024-02-21 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QS6 _pdbx_database_status.recvd_initial_deposition_date 2007-07-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pous, J.' 1 'Urpi, L.' 2 'Subirana, J.A.' 3 'Gouyette, C.' 4 'Navaza, J.' 5 'Campos, J.L.' 6 # _citation.id primary _citation.title 'Stabilization by extra-helical thymines of a DNA duplex with Hoogsteen base pairs.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 130 _citation.page_first 6755 _citation.page_last 6760 _citation.year 2008 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18447354 _citation.pdbx_database_id_DOI 10.1021/ja078022+ # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pous, J.' 1 ? primary 'Urpi, L.' 2 ? primary 'Subirana, J.A.' 3 ? primary 'Gouyette, C.' 4 ? primary 'Navaza, J.' 5 ? primary 'Campos, J.L.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DCP*DT)-3') ; 2400.616 14 ? ? ? ? 2 water nat water 18.015 40 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ATATATCT _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L,M,N _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DA n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Phosphoramidite method' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DT 2 2 2 DT DT B . n B 1 3 DA 3 3 3 DA DA B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DT 6 6 6 DT DT B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DT 8 8 8 DT DT B . n C 1 1 DA 1 1 1 DA DA C . n C 1 2 DT 2 2 2 DT DT C . n C 1 3 DA 3 3 3 DA DA C . n C 1 4 DT 4 4 4 DT DT C . n C 1 5 DA 5 5 5 DA DA C . n C 1 6 DT 6 6 6 DT DT C . n C 1 7 DC 7 7 7 DC DC C . n C 1 8 DT 8 8 8 DT DT C . n D 1 1 DA 1 1 1 DA DA D . n D 1 2 DT 2 2 2 DT DT D . n D 1 3 DA 3 3 3 DA DA D . n D 1 4 DT 4 4 4 DT DT D . n D 1 5 DA 5 5 5 DA DA D . n D 1 6 DT 6 6 6 DT DT D . n D 1 7 DC 7 7 7 DC DC D . n D 1 8 DT 8 8 8 DT DT D . n E 1 1 DA 1 1 1 DA DA E . n E 1 2 DT 2 2 2 DT DT E . n E 1 3 DA 3 3 3 DA DA E . n E 1 4 DT 4 4 4 DT DT E . n E 1 5 DA 5 5 5 DA DA E . n E 1 6 DT 6 6 6 DT DT E . n E 1 7 DC 7 7 7 DC DC E . n E 1 8 DT 8 8 8 DT DT E . n F 1 1 DA 1 1 1 DA DA F . n F 1 2 DT 2 2 2 DT DT F . n F 1 3 DA 3 3 3 DA DA F . n F 1 4 DT 4 4 4 DT DT F . n F 1 5 DA 5 5 5 DA DA F . n F 1 6 DT 6 6 6 DT DT F . n F 1 7 DC 7 7 7 DC DC F . n F 1 8 DT 8 8 ? ? ? F . n G 1 1 DA 1 1 1 DA DA G . n G 1 2 DT 2 2 2 DT DT G . n G 1 3 DA 3 3 3 DA DA G . n G 1 4 DT 4 4 4 DT DT G . n G 1 5 DA 5 5 5 DA DA G . n G 1 6 DT 6 6 6 DT DT G . n G 1 7 DC 7 7 7 DC DC G . n G 1 8 DT 8 8 8 DT DT G . n H 1 1 DA 1 1 1 DA DA H . n H 1 2 DT 2 2 2 DT DT H . n H 1 3 DA 3 3 3 DA DA H . n H 1 4 DT 4 4 4 DT DT H . n H 1 5 DA 5 5 5 DA DA H . n H 1 6 DT 6 6 6 DT DT H . n H 1 7 DC 7 7 7 DC DC H . n H 1 8 DT 8 8 8 DT DT H . n I 1 1 DA 1 1 1 DA DA I . n I 1 2 DT 2 2 2 DT DT I . n I 1 3 DA 3 3 3 DA DA I . n I 1 4 DT 4 4 4 DT DT I . n I 1 5 DA 5 5 5 DA DA I . n I 1 6 DT 6 6 6 DT DT I . n I 1 7 DC 7 7 7 DC DC I . n I 1 8 DT 8 8 8 DT DT I . n J 1 1 DA 1 1 1 DA DA J . n J 1 2 DT 2 2 2 DT DT J . n J 1 3 DA 3 3 3 DA DA J . n J 1 4 DT 4 4 4 DT DT J . n J 1 5 DA 5 5 5 DA DA J . n J 1 6 DT 6 6 6 DT DT J . n J 1 7 DC 7 7 7 DC DC J . n J 1 8 DT 8 8 8 DT DT J . n K 1 1 DA 1 1 1 DA DA K . n K 1 2 DT 2 2 2 DT DT K . n K 1 3 DA 3 3 3 DA DA K . n K 1 4 DT 4 4 4 DT DT K . n K 1 5 DA 5 5 5 DA DA K . n K 1 6 DT 6 6 6 DT DT K . n K 1 7 DC 7 7 7 DC DC K . n K 1 8 DT 8 8 8 DT DT K . n L 1 1 DA 1 1 1 DA DA L . n L 1 2 DT 2 2 2 DT DT L . n L 1 3 DA 3 3 3 DA DA L . n L 1 4 DT 4 4 4 DT DT L . n L 1 5 DA 5 5 5 DA DA L . n L 1 6 DT 6 6 6 DT DT L . n L 1 7 DC 7 7 7 DC DC L . n L 1 8 DT 8 8 8 DT DT L . n M 1 1 DA 1 1 1 DA DA M . n M 1 2 DT 2 2 2 DT DT M . n M 1 3 DA 3 3 3 DA DA M . n M 1 4 DT 4 4 4 DT DT M . n M 1 5 DA 5 5 5 DA DA M . n M 1 6 DT 6 6 6 DT DT M . n M 1 7 DC 7 7 7 DC DC M . n M 1 8 DT 8 8 8 DT DT M . n N 1 1 DA 1 1 1 DA DA N . n N 1 2 DT 2 2 2 DT DT N . n N 1 3 DA 3 3 3 DA DA N . n N 1 4 DT 4 4 4 DT DT N . n N 1 5 DA 5 5 5 DA DA N . n N 1 6 DT 6 6 6 DT DT N . n N 1 7 DC 7 7 7 DC DC N . n N 1 8 DT 8 8 8 DT DT N . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 HOH 1 9 9 HOH HOH A . O 2 HOH 2 10 12 HOH HOH A . O 2 HOH 3 11 13 HOH HOH A . P 2 HOH 1 17 17 HOH HOH B . P 2 HOH 2 18 18 HOH HOH B . P 2 HOH 3 19 20 HOH HOH B . P 2 HOH 4 20 29 HOH HOH B . Q 2 HOH 1 10 10 HOH HOH C . Q 2 HOH 2 11 35 HOH HOH C . R 2 HOH 1 49 49 HOH HOH D . R 2 HOH 2 50 17 HOH HOH D . R 2 HOH 3 51 18 HOH HOH D . R 2 HOH 4 52 19 HOH HOH D . R 2 HOH 5 53 20 HOH HOH D . R 2 HOH 6 54 21 HOH HOH D . R 2 HOH 7 55 22 HOH HOH D . R 2 HOH 8 56 23 HOH HOH D . R 2 HOH 9 57 24 HOH HOH D . R 2 HOH 10 58 26 HOH HOH D . R 2 HOH 11 59 27 HOH HOH D . S 2 HOH 1 16 16 HOH HOH E . S 2 HOH 2 17 27 HOH HOH E . T 2 HOH 1 9 8 HOH HOH F . T 2 HOH 2 10 9 HOH HOH F . T 2 HOH 3 11 12 HOH HOH F . T 2 HOH 4 12 13 HOH HOH F . U 2 HOH 1 38 38 HOH HOH G . U 2 HOH 2 39 56 HOH HOH G . V 2 HOH 1 9 9 HOH HOH H . W 2 HOH 1 9 9 HOH HOH I . W 2 HOH 2 10 30 HOH HOH I . W 2 HOH 3 11 51 HOH HOH I . X 2 HOH 1 17 17 HOH HOH J . X 2 HOH 2 18 21 HOH HOH J . Y 2 HOH 1 9 9 HOH HOH K . Y 2 HOH 2 10 10 HOH HOH K . Z 2 HOH 1 10 10 HOH HOH L . Z 2 HOH 2 11 11 HOH HOH L . AA 2 HOH 1 24 24 HOH HOH N . AA 2 HOH 2 25 52 HOH HOH N . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 I DT 8 ? "O5'" ? I DT 8 "O5'" 2 1 Y 1 I DT 8 ? "C5'" ? I DT 8 "C5'" 3 1 Y 1 I DT 8 ? "C4'" ? I DT 8 "C4'" 4 1 Y 1 I DT 8 ? "O4'" ? I DT 8 "O4'" 5 1 Y 1 I DT 8 ? "C3'" ? I DT 8 "C3'" 6 1 Y 1 I DT 8 ? "O3'" ? I DT 8 "O3'" 7 1 Y 1 I DT 8 ? "C2'" ? I DT 8 "C2'" 8 1 Y 1 I DT 8 ? "C1'" ? I DT 8 "C1'" 9 1 Y 1 I DT 8 ? N1 ? I DT 8 N1 10 1 Y 1 I DT 8 ? C2 ? I DT 8 C2 11 1 Y 1 I DT 8 ? O2 ? I DT 8 O2 12 1 Y 1 I DT 8 ? N3 ? I DT 8 N3 13 1 Y 1 I DT 8 ? C4 ? I DT 8 C4 14 1 Y 1 I DT 8 ? O4 ? I DT 8 O4 15 1 Y 1 I DT 8 ? C5 ? I DT 8 C5 16 1 Y 1 I DT 8 ? C7 ? I DT 8 C7 17 1 Y 1 I DT 8 ? C6 ? I DT 8 C6 18 1 Y 1 M DC 7 ? N1 ? M DC 7 N1 19 1 Y 1 M DC 7 ? C2 ? M DC 7 C2 20 1 Y 1 M DC 7 ? O2 ? M DC 7 O2 21 1 Y 1 M DC 7 ? N3 ? M DC 7 N3 22 1 Y 1 M DC 7 ? C4 ? M DC 7 C4 23 1 Y 1 M DC 7 ? N4 ? M DC 7 N4 24 1 Y 1 M DC 7 ? C5 ? M DC 7 C5 25 1 Y 1 M DC 7 ? C6 ? M DC 7 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.3.0034 ? 1 MAR345dtb 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 AMoRE phasing . ? 5 # _cell.entry_id 2QS6 _cell.length_a 120.836 _cell.length_b 39.540 _cell.length_c 71.753 _cell.angle_alpha 90.00 _cell.angle_beta 95.08 _cell.angle_gamma 90.00 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QS6 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2QS6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;Drop: 1.0mM octamer, 10% MPD, 22mM sodium cacodylate, 10mM magnesium chloride, 1.5mM spermine tetrachloride. Reservoir: from 25% to 45% MPD, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 '0% MPD' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 'spermine tetrachloride' ? ? ? 1 5 2 '25% to 45% MPD' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 113.15 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2004-03-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM16' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM16 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9790 # _reflns.entry_id 2QS6 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 71.43 _reflns.d_resolution_high 3.08 _reflns.number_obs 6262 _reflns.number_all 6262 _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.35 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.08 _reflns_shell.d_res_low 3.21 _reflns_shell.percent_possible_all 94.2 _reflns_shell.Rmerge_I_obs 0.222 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QS6 _refine.ls_number_reflns_obs 5188 _refine.ls_number_reflns_all 6503 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 71.43 _refine.ls_d_res_high 3.08 _refine.ls_percent_reflns_obs 88.86 _refine.ls_R_factor_obs .21446 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work .20689 _refine.ls_R_factor_R_free .28950 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.7 _refine.ls_number_reflns_R_free 555 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .958 _refine.correlation_coeff_Fo_to_Fc_free .895 _refine.B_iso_mean 65.775 _refine.aniso_B[1][1] .96 _refine.aniso_B[2][2] -1.18 _refine.aniso_B[3][3] -.59 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] -4.62 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'D(ATATAT)2 model with Hoogsteen base pairs (from NDB entry UD0049)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free .629 _refine.overall_SU_ML .506 _refine.overall_SU_B 59.211 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2181 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 2221 _refine_hist.d_res_high 3.08 _refine_hist.d_res_low 71.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .085 .055 ? 2613 'X-RAY DIFFRACTION' ? r_bond_other_d .002 .020 ? 1164 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.070 3.000 ? 3716 'X-RAY DIFFRACTION' ? r_angle_other_deg .939 3.000 ? 2863 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr .061 .200 ? 425 'X-RAY DIFFRACTION' ? r_gen_planes_refined .007 .020 ? 1119 'X-RAY DIFFRACTION' ? r_gen_planes_other .001 .020 ? 218 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.250 0.200 ? 908 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.404 0.200 ? 64 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.112 0.200 ? 10 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.234 0.200 ? 50 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.290 0.200 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.190 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.184 3.000 ? 2613 'X-RAY DIFFRACTION' ? r_scangle_it 1.668 4.500 ? 3716 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.08 _refine_ls_shell.d_res_low 3.165 _refine_ls_shell.number_reflns_R_work 251 _refine_ls_shell.R_factor_R_work .265 _refine_ls_shell.percent_reflns_obs 58.02 _refine_ls_shell.R_factor_R_free .495 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2QS6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2QS6 _struct.title 'Structure of a Hoogsteen antiparallel duplex with extra-helical thymines' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QS6 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Hoogsteen, Oligonucleotide, DNA, Thymines' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 2 ? Z N N 2 ? AA N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2QS6 _struct_ref.pdbx_db_accession 2QS6 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ATATATCT _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QS6 A 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 2 1 2QS6 B 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 3 1 2QS6 C 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 4 1 2QS6 D 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 5 1 2QS6 E 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 6 1 2QS6 F 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 7 1 2QS6 G 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 8 1 2QS6 H 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 9 1 2QS6 I 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 10 1 2QS6 J 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 11 1 2QS6 K 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 12 1 2QS6 L 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 13 1 2QS6 M 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 14 1 2QS6 N 1 ? 8 ? 2QS6 1 ? 8 ? 1 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 4 author_and_software_defined_assembly PISA dimeric 2 5 author_and_software_defined_assembly PISA dimeric 2 6 author_and_software_defined_assembly PISA dimeric 2 7 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 870 ? 1 MORE -3.4 ? 1 'SSA (A^2)' 2990 ? 2 'ABSA (A^2)' 860 ? 2 MORE -2.4 ? 2 'SSA (A^2)' 2940 ? 3 'ABSA (A^2)' 700 ? 3 MORE -3.6 ? 3 'SSA (A^2)' 2960 ? 4 'ABSA (A^2)' 860 ? 4 MORE -1.9 ? 4 'SSA (A^2)' 2930 ? 5 'ABSA (A^2)' 780 ? 5 MORE -2.5 ? 5 'SSA (A^2)' 2800 ? 6 'ABSA (A^2)' 850 ? 6 MORE -2.9 ? 6 'SSA (A^2)' 2910 ? 7 'ABSA (A^2)' 860 ? 7 MORE -1.8 ? 7 'SSA (A^2)' 2840 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,O,P 2 1 C,D,Q,R 3 1 E,F,S,T 4 1 G,H,U,V 5 1 I,J,W,X 6 1 K,L,Y,Z 7 1 M,N,AA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 1 B DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A DA 1 N7 ? ? ? 1_555 B DT 6 N3 ? ? A DA 1 B DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 5 N7 ? ? A DT 2 B DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 2 B DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog5 hydrog ? ? A DT 2 O2 ? ? ? 1_555 B DT 8 N3 ? ? A DT 2 B DT 8 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog6 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 3 B DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog7 hydrog ? ? A DA 3 N7 ? ? ? 1_555 B DT 4 N3 ? ? A DA 3 B DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 3 N7 ? ? A DT 4 B DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 4 B DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog10 hydrog ? ? A DA 5 N7 ? ? ? 1_555 B DT 2 N3 ? ? A DA 5 B DT 2 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 1 N7 ? ? A DT 6 B DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 6 B DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog13 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DT 2 O2 ? ? A DT 8 B DT 2 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog14 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 1 D DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog15 hydrog ? ? C DA 1 N7 ? ? ? 1_555 D DT 6 N3 ? ? C DA 1 D DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog16 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 5 N7 ? ? C DT 2 D DA 5 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog17 hydrog ? ? C DT 2 O2 ? ? ? 1_555 D DT 8 N3 ? ? C DT 2 D DT 8 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog18 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 3 D DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? C DA 3 N7 ? ? ? 1_555 D DT 4 N3 ? ? C DA 3 D DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog20 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 3 N7 ? ? C DT 4 D DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog21 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 4 D DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog22 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 5 D DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog23 hydrog ? ? C DA 5 N7 ? ? ? 1_555 D DT 2 N3 ? ? C DA 5 D DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog24 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 1 N7 ? ? C DT 6 D DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog25 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 1 N6 ? ? C DT 6 D DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog26 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DT 2 O2 ? ? C DT 8 D DT 2 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog27 hydrog ? ? E DA 1 N6 ? ? ? 1_555 F DT 6 O4 ? ? E DA 1 F DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog28 hydrog ? ? E DA 1 N7 ? ? ? 1_555 F DT 6 N3 ? ? E DA 1 F DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog29 hydrog ? ? E DT 2 N3 ? ? ? 1_555 F DA 5 N7 ? ? E DT 2 F DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog30 hydrog ? ? E DT 2 O4 ? ? ? 1_555 F DA 5 N6 ? ? E DT 2 F DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog31 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 4 O4 ? ? E DA 3 F DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog32 hydrog ? ? E DA 3 N7 ? ? ? 1_555 F DT 4 N3 ? ? E DA 3 F DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? E DT 4 N3 ? ? ? 1_555 F DA 3 N7 ? ? E DT 4 F DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? E DT 4 O4 ? ? ? 1_555 F DA 3 N6 ? ? E DT 4 F DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog35 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 2 O4 ? ? E DA 5 F DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog36 hydrog ? ? E DA 5 N7 ? ? ? 1_555 F DT 2 N3 ? ? E DA 5 F DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog37 hydrog ? ? E DT 6 N3 ? ? ? 1_555 F DA 1 N7 ? ? E DT 6 F DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog38 hydrog ? ? E DT 6 O4 ? ? ? 1_555 F DA 1 N6 ? ? E DT 6 F DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog39 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DT 2 O2 ? ? E DT 8 F DT 2 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog40 hydrog ? ? G DA 1 N6 ? ? ? 1_555 H DT 6 O4 ? ? G DA 1 H DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog41 hydrog ? ? G DA 1 N7 ? ? ? 1_555 H DT 6 N3 ? ? G DA 1 H DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog42 hydrog ? ? G DT 2 N3 ? ? ? 1_555 H DA 5 N7 ? ? G DT 2 H DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog43 hydrog ? ? G DT 2 O4 ? ? ? 1_555 H DA 5 N6 ? ? G DT 2 H DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog44 hydrog ? ? G DT 2 O2 ? ? ? 1_555 H DT 8 N3 ? ? G DT 2 H DT 8 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog45 hydrog ? ? G DA 3 N6 ? ? ? 1_555 H DT 4 O4 ? ? G DA 3 H DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog46 hydrog ? ? G DA 3 N7 ? ? ? 1_555 H DT 4 N3 ? ? G DA 3 H DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog47 hydrog ? ? G DT 4 N3 ? ? ? 1_555 H DA 3 N7 ? ? G DT 4 H DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog48 hydrog ? ? G DT 4 O4 ? ? ? 1_555 H DA 3 N6 ? ? G DT 4 H DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog49 hydrog ? ? G DA 5 N6 ? ? ? 1_555 H DT 2 O4 ? ? G DA 5 H DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog50 hydrog ? ? G DA 5 N7 ? ? ? 1_555 H DT 2 N3 ? ? G DA 5 H DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog51 hydrog ? ? G DT 6 N3 ? ? ? 1_555 H DA 1 N7 ? ? G DT 6 H DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog52 hydrog ? ? G DT 6 O4 ? ? ? 1_555 H DA 1 N6 ? ? G DT 6 H DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog53 hydrog ? ? G DT 8 N3 ? ? ? 1_555 H DT 2 O2 ? ? G DT 8 H DT 2 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog54 hydrog ? ? I DA 1 N6 ? ? ? 1_555 J DT 6 O4 ? ? I DA 1 J DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog55 hydrog ? ? I DA 1 N7 ? ? ? 1_555 J DT 6 N3 ? ? I DA 1 J DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog56 hydrog ? ? I DT 2 N3 ? ? ? 1_555 J DA 5 N7 ? ? I DT 2 J DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog57 hydrog ? ? I DT 2 O4 ? ? ? 1_555 J DA 5 N6 ? ? I DT 2 J DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog58 hydrog ? ? I DT 2 O2 ? ? ? 1_555 J DT 8 N3 ? ? I DT 2 J DT 8 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog59 hydrog ? ? I DA 3 N6 ? ? ? 1_555 J DT 4 O4 ? ? I DA 3 J DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog60 hydrog ? ? I DA 3 N7 ? ? ? 1_555 J DT 4 N3 ? ? I DA 3 J DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog61 hydrog ? ? I DT 4 N3 ? ? ? 1_555 J DA 3 N7 ? ? I DT 4 J DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog62 hydrog ? ? I DT 4 O4 ? ? ? 1_555 J DA 3 N6 ? ? I DT 4 J DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog63 hydrog ? ? I DA 5 N6 ? ? ? 1_555 J DT 2 O4 ? ? I DA 5 J DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog64 hydrog ? ? I DA 5 N7 ? ? ? 1_555 J DT 2 N3 ? ? I DA 5 J DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog65 hydrog ? ? I DT 6 N3 ? ? ? 1_555 J DA 1 N7 ? ? I DT 6 J DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog66 hydrog ? ? I DT 6 O4 ? ? ? 1_555 J DA 1 N6 ? ? I DT 6 J DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog67 hydrog ? ? K DA 1 N6 ? ? ? 1_555 L DT 6 O4 ? ? K DA 1 L DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog68 hydrog ? ? K DA 1 N7 ? ? ? 1_555 L DT 6 N3 ? ? K DA 1 L DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog69 hydrog ? ? K DT 2 N3 ? ? ? 1_555 L DA 5 N7 ? ? K DT 2 L DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog70 hydrog ? ? K DT 2 O4 ? ? ? 1_555 L DA 5 N6 ? ? K DT 2 L DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog71 hydrog ? ? K DT 2 O2 ? ? ? 1_555 L DT 8 N3 ? ? K DT 2 L DT 8 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog72 hydrog ? ? K DA 3 N6 ? ? ? 1_555 L DT 4 O4 ? ? K DA 3 L DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog73 hydrog ? ? K DA 3 N7 ? ? ? 1_555 L DT 4 N3 ? ? K DA 3 L DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog74 hydrog ? ? K DT 4 N3 ? ? ? 1_555 L DA 3 N7 ? ? K DT 4 L DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog75 hydrog ? ? K DT 4 O4 ? ? ? 1_555 L DA 3 N6 ? ? K DT 4 L DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog76 hydrog ? ? K DA 5 N6 ? ? ? 1_555 L DT 2 O4 ? ? K DA 5 L DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog77 hydrog ? ? K DA 5 N7 ? ? ? 1_555 L DT 2 N3 ? ? K DA 5 L DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog78 hydrog ? ? K DT 6 N3 ? ? ? 1_555 L DA 1 N7 ? ? K DT 6 L DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog79 hydrog ? ? K DT 6 O4 ? ? ? 1_555 L DA 1 N6 ? ? K DT 6 L DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog80 hydrog ? ? K DT 8 N3 ? ? ? 1_555 L DT 2 O2 ? ? K DT 8 L DT 2 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog81 hydrog ? ? M DA 1 N6 ? ? ? 1_555 N DT 6 O4 ? ? M DA 1 N DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog82 hydrog ? ? M DA 1 N7 ? ? ? 1_555 N DT 6 N3 ? ? M DA 1 N DT 6 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog83 hydrog ? ? M DT 2 N3 ? ? ? 1_555 N DA 5 N7 ? ? M DT 2 N DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog84 hydrog ? ? M DT 2 O4 ? ? ? 1_555 N DA 5 N6 ? ? M DT 2 N DA 5 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog85 hydrog ? ? M DT 2 O2 ? ? ? 1_555 N DT 8 N3 ? ? M DT 2 N DT 8 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog86 hydrog ? ? M DA 3 N6 ? ? ? 1_555 N DT 4 O4 ? ? M DA 3 N DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog87 hydrog ? ? M DA 3 N7 ? ? ? 1_555 N DT 4 N3 ? ? M DA 3 N DT 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog88 hydrog ? ? M DT 4 N3 ? ? ? 1_555 N DA 3 N7 ? ? M DT 4 N DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog89 hydrog ? ? M DT 4 O4 ? ? ? 1_555 N DA 3 N6 ? ? M DT 4 N DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog90 hydrog ? ? M DA 5 N6 ? ? ? 1_555 N DT 2 O4 ? ? M DA 5 N DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog91 hydrog ? ? M DA 5 N7 ? ? ? 1_555 N DT 2 N3 ? ? M DA 5 N DT 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog92 hydrog ? ? M DT 6 N3 ? ? ? 1_555 N DA 1 N7 ? ? M DT 6 N DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog93 hydrog ? ? M DT 6 O4 ? ? ? 1_555 N DA 1 N6 ? ? M DT 6 N DA 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog94 hydrog ? ? M DT 8 N3 ? ? ? 1_555 N DT 2 O2 ? ? M DT 8 N DT 2 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A DA 5 ? ? O A HOH 10 ? ? 2.01 2 1 "O3'" N DT 4 ? ? O N HOH 25 ? ? 2.04 3 1 "O5'" F DA 5 ? ? O F HOH 11 ? ? 2.15 4 1 "O5'" D DA 3 ? ? O D HOH 50 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C1'" D DC 7 ? ? N1 D DC 7 ? ? 1.566 1.488 0.078 0.013 N 2 1 "O3'" H DA 5 ? ? "C3'" H DA 5 ? ? 1.369 1.419 -0.050 0.006 N 3 1 "O3'" J DT 6 ? ? "C3'" J DT 6 ? ? 1.374 1.419 -0.045 0.006 N 4 1 "O3'" L DA 5 ? ? "C3'" L DA 5 ? ? 1.370 1.419 -0.049 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.96 108.30 2.66 0.30 N 2 1 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 112.93 108.30 4.63 0.30 N 3 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 110.55 108.30 2.25 0.30 N 4 1 "O4'" C DA 5 ? ? "C1'" C DA 5 ? ? N9 C DA 5 ? ? 110.34 108.30 2.04 0.30 N 5 1 "O4'" C DC 7 ? ? "C1'" C DC 7 ? ? N1 C DC 7 ? ? 110.95 108.30 2.65 0.30 N 6 1 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.43 108.30 2.13 0.30 N 7 1 "O4'" D DC 7 ? ? "C1'" D DC 7 ? ? N1 D DC 7 ? ? 110.77 108.30 2.47 0.30 N 8 1 "O4'" E DT 6 ? ? "C1'" E DT 6 ? ? N1 E DT 6 ? ? 112.63 108.30 4.33 0.30 N 9 1 "O4'" F DT 4 ? ? "C1'" F DT 4 ? ? N1 F DT 4 ? ? 110.87 108.30 2.57 0.30 N 10 1 "O4'" F DA 5 ? ? "C1'" F DA 5 ? ? N9 F DA 5 ? ? 110.24 108.30 1.94 0.30 N 11 1 "O4'" F DT 6 ? ? "C1'" F DT 6 ? ? N1 F DT 6 ? ? 110.16 108.30 1.86 0.30 N 12 1 "O4'" G DT 6 ? ? "C1'" G DT 6 ? ? N1 G DT 6 ? ? 110.26 108.30 1.96 0.30 N 13 1 "C1'" G DT 8 ? ? "O4'" G DT 8 ? ? "C4'" G DT 8 ? ? 103.59 110.10 -6.51 1.00 N 14 1 "O4'" G DT 8 ? ? "C1'" G DT 8 ? ? N1 G DT 8 ? ? 113.68 108.30 5.38 0.30 N 15 1 "O4'" H DA 5 ? ? "C1'" H DA 5 ? ? N9 H DA 5 ? ? 110.54 108.30 2.24 0.30 N 16 1 "O4'" H DT 8 ? ? "C1'" H DT 8 ? ? N1 H DT 8 ? ? 110.58 108.30 2.28 0.30 N 17 1 "O4'" I DA 5 ? ? "C1'" I DA 5 ? ? N9 I DA 5 ? ? 110.12 108.30 1.82 0.30 N 18 1 "O4'" J DT 4 ? ? "C1'" J DT 4 ? ? N1 J DT 4 ? ? 110.82 108.30 2.52 0.30 N 19 1 "O4'" J DA 5 ? ? "C1'" J DA 5 ? ? N9 J DA 5 ? ? 111.11 108.30 2.81 0.30 N 20 1 "O4'" J DC 7 ? ? "C1'" J DC 7 ? ? N1 J DC 7 ? ? 112.20 108.30 3.90 0.30 N 21 1 "O4'" J DT 8 ? ? "C1'" J DT 8 ? ? N1 J DT 8 ? ? 110.19 108.30 1.89 0.30 N 22 1 "O4'" K DA 5 ? ? "C1'" K DA 5 ? ? N9 K DA 5 ? ? 110.34 108.30 2.04 0.30 N 23 1 "O4'" L DA 3 ? ? "C1'" L DA 3 ? ? N9 L DA 3 ? ? 110.78 108.30 2.48 0.30 N 24 1 "O4'" L DT 4 ? ? "C1'" L DT 4 ? ? N1 L DT 4 ? ? 111.01 108.30 2.71 0.30 N 25 1 "O4'" L DT 6 ? ? "C1'" L DT 6 ? ? N1 L DT 6 ? ? 111.27 108.30 2.97 0.30 N 26 1 "O4'" N DT 4 ? ? "C1'" N DT 4 ? ? N1 N DT 4 ? ? 112.02 108.30 3.72 0.30 N # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 77.6220 _pdbx_refine_tls.origin_y 6.4140 _pdbx_refine_tls.origin_z 42.4490 _pdbx_refine_tls.T[1][1] -.1341 _pdbx_refine_tls.T[2][2] .0274 _pdbx_refine_tls.T[3][3] -.1792 _pdbx_refine_tls.T[1][2] .1767 _pdbx_refine_tls.T[1][3] .1262 _pdbx_refine_tls.T[2][3] .2242 _pdbx_refine_tls.L[1][1] 2.0275 _pdbx_refine_tls.L[2][2] 5.8677 _pdbx_refine_tls.L[3][3] 3.3643 _pdbx_refine_tls.L[1][2] -2.5723 _pdbx_refine_tls.L[1][3] 2.1497 _pdbx_refine_tls.L[2][3] -4.1624 _pdbx_refine_tls.S[1][1] -.0876 _pdbx_refine_tls.S[1][2] -.1444 _pdbx_refine_tls.S[1][3] -.0793 _pdbx_refine_tls.S[2][1] .0177 _pdbx_refine_tls.S[2][2] .3001 _pdbx_refine_tls.S[2][3] .3277 _pdbx_refine_tls.S[3][1] .0091 _pdbx_refine_tls.S[3][2] -.2120 _pdbx_refine_tls.S[3][3] -.2125 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 6 A 6 ? 'X-RAY DIFFRACTION' ? 2 1 B 1 B 1 B 6 B 6 ? 'X-RAY DIFFRACTION' ? 3 1 C 1 C 1 C 6 C 6 ? 'X-RAY DIFFRACTION' ? 4 1 D 1 D 1 D 6 D 6 ? 'X-RAY DIFFRACTION' ? 5 1 E 1 E 1 E 6 E 6 ? 'X-RAY DIFFRACTION' ? 6 1 F 1 F 1 F 6 F 6 ? 'X-RAY DIFFRACTION' ? 7 1 G 1 G 1 G 6 G 6 ? 'X-RAY DIFFRACTION' ? 8 1 H 1 H 1 H 6 H 6 ? 'X-RAY DIFFRACTION' ? 9 1 I 1 I 1 I 6 I 6 ? 'X-RAY DIFFRACTION' ? 10 1 J 1 J 1 J 6 J 6 ? 'X-RAY DIFFRACTION' ? 11 1 K 1 K 1 K 6 K 6 ? 'X-RAY DIFFRACTION' ? 12 1 L 1 L 1 L 6 L 6 ? 'X-RAY DIFFRACTION' ? 13 1 M 1 M 1 M 6 M 6 ? 'X-RAY DIFFRACTION' ? 14 1 N 1 N 1 N 6 N 6 ? 'X-RAY DIFFRACTION' ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id F _pdbx_unobs_or_zero_occ_residues.auth_comp_id DT _pdbx_unobs_or_zero_occ_residues.auth_seq_id 8 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id F _pdbx_unobs_or_zero_occ_residues.label_comp_id DT _pdbx_unobs_or_zero_occ_residues.label_seq_id 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DT OP3 O N N 71 DT P P N N 72 DT OP1 O N N 73 DT OP2 O N N 74 DT "O5'" O N N 75 DT "C5'" C N N 76 DT "C4'" C N R 77 DT "O4'" O N N 78 DT "C3'" C N S 79 DT "O3'" O N N 80 DT "C2'" C N N 81 DT "C1'" C N R 82 DT N1 N N N 83 DT C2 C N N 84 DT O2 O N N 85 DT N3 N N N 86 DT C4 C N N 87 DT O4 O N N 88 DT C5 C N N 89 DT C7 C N N 90 DT C6 C N N 91 DT HOP3 H N N 92 DT HOP2 H N N 93 DT "H5'" H N N 94 DT "H5''" H N N 95 DT "H4'" H N N 96 DT "H3'" H N N 97 DT "HO3'" H N N 98 DT "H2'" H N N 99 DT "H2''" H N N 100 DT "H1'" H N N 101 DT H3 H N N 102 DT H71 H N N 103 DT H72 H N N 104 DT H73 H N N 105 DT H6 H N N 106 HOH O O N N 107 HOH H1 H N N 108 HOH H2 H N N 109 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DT OP3 P sing N N 74 DT OP3 HOP3 sing N N 75 DT P OP1 doub N N 76 DT P OP2 sing N N 77 DT P "O5'" sing N N 78 DT OP2 HOP2 sing N N 79 DT "O5'" "C5'" sing N N 80 DT "C5'" "C4'" sing N N 81 DT "C5'" "H5'" sing N N 82 DT "C5'" "H5''" sing N N 83 DT "C4'" "O4'" sing N N 84 DT "C4'" "C3'" sing N N 85 DT "C4'" "H4'" sing N N 86 DT "O4'" "C1'" sing N N 87 DT "C3'" "O3'" sing N N 88 DT "C3'" "C2'" sing N N 89 DT "C3'" "H3'" sing N N 90 DT "O3'" "HO3'" sing N N 91 DT "C2'" "C1'" sing N N 92 DT "C2'" "H2'" sing N N 93 DT "C2'" "H2''" sing N N 94 DT "C1'" N1 sing N N 95 DT "C1'" "H1'" sing N N 96 DT N1 C2 sing N N 97 DT N1 C6 sing N N 98 DT C2 O2 doub N N 99 DT C2 N3 sing N N 100 DT N3 C4 sing N N 101 DT N3 H3 sing N N 102 DT C4 O4 doub N N 103 DT C4 C5 sing N N 104 DT C5 C7 sing N N 105 DT C5 C6 doub N N 106 DT C7 H71 sing N N 107 DT C7 H72 sing N N 108 DT C7 H73 sing N N 109 DT C6 H6 sing N N 110 HOH O H1 sing N N 111 HOH O H2 sing N N 112 # _ndb_struct_conf_na.entry_id 2QS6 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 6 1_555 0.246 -3.498 0.121 -4.921 18.750 61.087 1 A_DA1:DT6_B A 1 ? B 6 ? 23 3 1 A DT 2 1_555 B DA 5 1_555 -0.054 3.429 0.551 -21.404 -4.360 -60.676 2 A_DT2:DA5_B A 2 ? B 5 ? 23 3 1 A DA 3 1_555 B DT 4 1_555 0.577 -3.793 -0.496 0.274 0.823 67.174 3 A_DA3:DT4_B A 3 ? B 4 ? 23 3 1 A DT 4 1_555 B DA 3 1_555 -0.236 3.627 0.573 -7.867 -8.483 -65.085 4 A_DT4:DA3_B A 4 ? B 3 ? 23 3 1 A DA 5 1_555 B DT 2 1_555 0.388 -3.897 -0.569 11.857 6.486 59.157 5 A_DA5:DT2_B A 5 ? B 2 ? ? ? 1 A DT 6 1_555 B DA 1 1_555 -0.956 3.664 -0.392 6.261 -14.019 -69.326 6 A_DT6:DA1_B A 6 ? B 1 ? 23 3 1 C DA 1 1_555 D DT 6 1_555 0.229 -3.597 0.722 -5.255 17.742 60.939 7 C_DA1:DT6_D C 1 ? D 6 ? 23 3 1 C DT 2 1_555 D DA 5 1_555 -0.136 3.792 0.743 -13.131 -3.982 -57.488 8 C_DT2:DA5_D C 2 ? D 5 ? ? ? 1 C DA 3 1_555 D DT 4 1_555 0.188 -3.333 -0.206 -2.799 5.754 59.794 9 C_DA3:DT4_D C 3 ? D 4 ? 23 3 1 C DT 4 1_555 D DA 3 1_555 -1.112 3.658 0.927 -12.943 5.712 -68.657 10 C_DT4:DA3_D C 4 ? D 3 ? 23 3 1 C DA 5 1_555 D DT 2 1_555 0.337 -3.405 -0.203 0.028 13.770 63.968 11 C_DA5:DT2_D C 5 ? D 2 ? 23 3 1 C DT 6 1_555 D DA 1 1_555 -0.936 3.470 0.317 -6.505 -7.107 -69.079 12 C_DT6:DA1_D C 6 ? D 1 ? 23 3 1 E DA 1 1_555 F DT 6 1_555 0.691 -3.452 -0.046 -10.636 9.950 64.312 13 E_DA1:DT6_F E 1 ? F 6 ? 23 3 1 E DT 2 1_555 F DA 5 1_555 -0.244 3.339 1.063 -13.108 0.665 -62.936 14 E_DT2:DA5_F E 2 ? F 5 ? 23 3 1 E DA 3 1_555 F DT 4 1_555 1.188 -3.276 -0.864 7.885 3.374 78.687 15 E_DA3:DT4_F E 3 ? F 4 ? 23 3 1 E DT 4 1_555 F DA 3 1_555 -0.907 3.888 0.689 -10.066 -0.392 -70.230 16 E_DT4:DA3_F E 4 ? F 3 ? 23 3 1 E DT 8 1_555 F DT 2 1_555 0.669 4.449 0.537 -27.591 17.590 104.434 17 E_DT8:DT2_F E 8 ? F 2 ? ? ? 1 E DT 6 1_555 F DA 1 1_555 -0.756 3.487 0.032 2.372 -13.679 -67.307 18 E_DT6:DA1_F E 6 ? F 1 ? 23 3 1 G DA 1 1_555 H DT 6 1_555 0.886 -3.680 -0.268 -9.962 9.430 67.856 19 G_DA1:DT6_H G 1 ? H 6 ? 23 3 1 G DT 2 1_555 H DT 8 1_555 -0.801 -4.490 0.367 16.766 -28.166 -108.736 20 G_DT2:DT8_H G 2 ? H 8 ? ? ? 1 G DA 3 1_555 H DT 4 1_555 0.573 -3.726 -0.310 2.356 3.266 66.053 21 G_DA3:DT4_H G 3 ? H 4 ? 23 3 1 G DT 4 1_555 H DA 3 1_555 -0.959 3.604 0.456 -2.847 -4.120 -70.156 22 G_DT4:DA3_H G 4 ? H 3 ? 23 3 1 G DT 8 1_555 H DT 2 1_555 0.462 4.495 -0.218 -18.857 16.572 103.959 23 G_DT8:DT2_H G 8 ? H 2 ? ? ? 1 G DT 6 1_555 H DA 1 1_555 -1.251 3.551 -0.802 5.326 -15.045 -73.272 24 G_DT6:DA1_H G 6 ? H 1 ? 23 3 1 I DA 1 1_555 J DT 6 1_555 0.348 -3.644 -0.223 -5.357 13.808 62.250 25 I_DA1:DT6_J I 1 ? J 6 ? 23 3 1 I DT 2 1_555 J DA 5 1_555 -1.026 3.899 1.073 -16.818 -6.155 -65.752 26 I_DT2:DA5_J I 2 ? J 5 ? 23 3 1 I DA 3 1_555 J DT 4 1_555 0.423 -3.284 -0.175 -1.195 6.874 70.623 27 I_DA3:DT4_J I 3 ? J 4 ? 23 3 1 I DT 4 1_555 J DA 3 1_555 -0.814 3.208 0.614 -0.442 4.294 -78.828 28 I_DT4:DA3_J I 4 ? J 3 ? 23 3 1 I DA 5 1_555 J DT 2 1_555 0.828 -3.324 -0.688 7.444 21.313 67.932 29 I_DA5:DT2_J I 5 ? J 2 ? 23 3 1 I DT 6 1_555 J DA 1 1_555 0.119 2.995 0.868 -1.286 -2.469 -59.357 30 I_DT6:DA1_J I 6 ? J 1 ? 23 3 1 K DA 1 1_555 L DT 6 1_555 0.895 -3.358 0.911 -12.092 13.132 68.498 31 K_DA1:DT6_L K 1 ? L 6 ? 23 3 1 K DT 2 1_555 L DT 8 1_555 -0.547 -4.236 -0.242 22.246 -10.905 -103.056 32 K_DT2:DT8_L K 2 ? L 8 ? ? ? 1 K DA 3 1_555 L DT 4 1_555 0.297 -3.131 -1.122 5.235 0.042 66.425 33 K_DA3:DT4_L K 3 ? L 4 ? 23 3 1 K DT 4 1_555 L DA 3 1_555 -1.154 3.452 0.929 -4.195 -4.097 -74.073 34 K_DT4:DA3_L K 4 ? L 3 ? 23 3 1 K DT 8 1_555 L DT 2 1_555 0.492 4.214 -0.013 -16.315 19.108 107.719 35 K_DT8:DT2_L K 8 ? L 2 ? ? ? 1 K DT 6 1_555 L DA 1 1_555 -0.323 3.326 -0.058 4.813 -12.698 -64.553 36 K_DT6:DA1_L K 6 ? L 1 ? 23 3 1 M DA 1 1_555 N DT 6 1_555 1.118 -3.489 0.182 -8.902 14.168 70.854 37 M_DA1:DT6_N M 1 ? N 6 ? 23 3 1 M DT 2 1_555 N DT 8 1_555 -0.861 -4.017 -0.091 18.653 -12.814 -109.502 38 M_DT2:DT8_N M 2 ? N 8 ? ? ? 1 M DA 3 1_555 N DT 4 1_555 1.036 -3.593 -0.370 0.922 5.658 75.652 39 M_DA3:DT4_N M 3 ? N 4 ? 23 3 1 M DT 4 1_555 N DA 3 1_555 0.148 3.047 0.474 0.024 -4.897 -65.070 40 M_DT4:DA3_N M 4 ? N 3 ? 23 3 1 M DA 5 1_555 N DT 2 1_555 0.803 -3.938 -1.023 16.471 -5.243 60.991 41 M_DA5:DT2_N M 5 ? N 2 ? 23 3 1 M DT 6 1_555 N DA 1 1_555 -0.456 3.521 -0.960 20.547 -22.485 -65.639 42 M_DT6:DA1_N M 6 ? N 1 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 6 1_555 A DT 2 1_555 B DA 5 1_555 0.594 4.242 1.201 -90.675 146.140 -140.545 -2.212 0.241 0.023 -73.269 -45.461 -177.297 1 AA_DA1DT2:DA5DT6_BB A 1 ? B 6 ? A 2 ? B 5 ? 1 A DT 2 1_555 B DA 5 1_555 A DA 3 1_555 B DT 4 1_555 1.600 3.128 -4.815 159.817 -67.416 14.442 0.681 -2.901 -0.350 -34.820 -82.545 173.506 2 AA_DT2DA3:DT4DA5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A DA 3 1_555 B DT 4 1_555 A DT 4 1_555 B DA 3 1_555 0.035 4.889 1.407 -101.706 139.176 -140.957 -2.544 -0.054 0.017 -69.765 -50.982 -177.455 3 AA_DA3DT4:DA3DT4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 A DT 4 1_555 B DA 3 1_555 A DA 5 1_555 B DT 2 1_555 2.367 -4.837 2.133 -164.343 66.581 107.424 -2.510 -1.408 -0.653 33.388 82.413 178.413 4 AA_DT4DA5:DT2DA3_BB A 4 ? B 3 ? A 5 ? B 2 ? 1 A DA 5 1_555 B DT 2 1_555 A DT 6 1_555 B DA 1 1_555 0.011 4.716 2.487 -103.287 142.279 -107.451 -2.655 -0.210 -0.248 -71.467 -51.881 -177.525 5 AA_DA5DT6:DA1DT2_BB A 5 ? B 2 ? A 6 ? B 1 ? 1 A DT 6 1_555 B DA 1 1_555 C DA 1 1_555 D DT 6 1_555 0.607 -4.160 0.586 -162.712 61.843 122.541 -2.086 -0.318 -0.469 31.051 81.697 177.150 6 AC_DT6DA1:DT6DA1_DB A 6 ? B 1 ? C 1 ? D 6 ? 1 C DA 1 1_555 D DT 6 1_555 C DT 2 1_555 D DA 5 1_555 -1.118 -3.548 -3.194 95.069 -140.262 73.605 -2.456 0.102 -0.072 -71.878 -48.719 171.552 7 CC_DA1DT2:DA5DT6_DD C 1 ? D 6 ? C 2 ? D 5 ? 1 C DT 2 1_555 D DA 5 1_555 C DA 3 1_555 D DT 4 1_555 -0.672 4.026 -3.995 162.903 -68.710 -48.846 -2.471 -1.422 0.336 34.720 82.316 -177.087 8 CC_DT2DA3:DT4DA5_DD C 2 ? D 5 ? C 3 ? D 4 ? 1 C DA 3 1_555 D DT 4 1_555 C DT 4 1_555 D DA 3 1_555 0.023 -5.345 -1.167 106.213 -141.538 158.051 -2.730 -0.055 -0.330 -70.791 -53.123 179.421 9 CC_DA3DT4:DA3DT4_DD C 3 ? D 4 ? C 4 ? D 3 ? 1 C DT 4 1_555 D DA 3 1_555 C DA 5 1_555 D DT 2 1_555 -5.147 -1.898 2.232 -166.790 63.545 -138.631 0.856 -2.817 0.628 -31.790 -83.441 -179.465 10 CC_DT4DA5:DT2DA3_DD C 4 ? D 3 ? C 5 ? D 2 ? 1 C DA 5 1_555 D DT 2 1_555 C DT 6 1_555 D DA 1 1_555 0.159 4.424 2.235 -98.062 141.197 -110.272 -2.477 -0.104 -0.186 -71.193 -49.444 -175.378 11 CC_DA5DT6:DA1DT2_DD C 5 ? D 2 ? C 6 ? D 1 ? 1 C DT 6 1_555 D DA 1 1_555 E DA 1 1_555 F DT 6 1_555 1.017 3.289 -1.970 167.681 -55.142 3.402 1.328 -1.473 -0.119 -28.099 -85.447 176.517 12 CE_DT6DA1:DT6DA1_FD C 6 ? D 1 ? E 1 ? F 6 ? 1 E DA 1 1_555 F DT 6 1_555 E DT 2 1_555 F DA 5 1_555 3.835 0.082 3.266 -97.050 146.979 75.749 -0.706 -2.411 0.392 74.113 48.937 176.945 13 EE_DA1DT2:DA5DT6_FF E 1 ? F 6 ? E 2 ? F 5 ? 1 E DT 2 1_555 F DA 5 1_555 E DA 3 1_555 F DT 4 1_555 -0.551 3.838 -3.538 163.838 -67.013 -48.436 -2.311 -1.233 0.338 33.840 82.734 -177.277 14 EE_DT2DA3:DT4DA5_FF E 2 ? F 5 ? E 3 ? F 4 ? 1 E DA 3 1_555 F DT 4 1_555 E DT 4 1_555 F DA 3 1_555 1.950 2.951 3.864 -103.579 142.514 -47.974 -2.607 0.154 0.438 -72.174 -52.456 -176.509 15 EE_DA3DT4:DA3DT4_FF E 3 ? F 4 ? E 4 ? F 3 ? 1 E DT 4 1_555 F DA 3 1_555 E DT 8 1_555 F DT 2 1_555 -0.024 4.084 -0.470 137.035 -74.386 3.382 1.507 -1.057 -1.983 -42.764 -78.781 155.933 16 EE_DT4DT8:DT2DA3_FF E 4 ? F 3 ? E 8 ? F 2 ? 1 E DT 8 1_555 F DT 2 1_555 E DT 6 1_555 F DA 1 1_555 4.555 -2.651 0.717 -67.212 143.009 51.041 -0.521 -1.924 -3.587 77.124 36.247 160.184 17 EE_DT8DT6:DA1DT2_FF E 8 ? F 2 ? E 6 ? F 1 ? 1 E DT 6 1_555 F DA 1 1_555 G DA 1 1_555 H DT 6 1_555 1.491 3.188 -1.800 165.754 -54.184 30.066 1.374 -1.423 -0.055 -27.738 -84.853 174.578 18 EG_DT6DA1:DT6DA1_HF E 6 ? F 1 ? G 1 ? H 6 ? 1 G DA 1 1_555 H DT 6 1_555 G DT 2 1_555 H DT 8 1_555 -3.966 2.788 -1.541 65.738 -149.437 -29.679 -0.674 -1.680 3.609 80.406 35.371 -163.820 19 GG_DA1DT2:DT8DT6_HH G 1 ? H 6 ? G 2 ? H 8 ? 1 G DT 2 1_555 H DT 8 1_555 G DA 3 1_555 H DT 4 1_555 -0.788 -4.147 0.220 -132.583 84.227 -2.289 1.638 -1.154 1.563 -48.136 -75.771 -157.079 20 GG_DT2DA3:DT4DT8_HH G 2 ? H 8 ? G 3 ? H 4 ? 1 G DA 3 1_555 H DT 4 1_555 G DT 4 1_555 H DA 3 1_555 -2.380 -2.084 -4.119 103.248 -145.216 12.502 -2.595 0.086 -0.131 -73.269 -52.094 178.190 21 GG_DA3DT4:DA3DT4_HH G 3 ? H 4 ? G 4 ? H 3 ? 1 G DT 4 1_555 H DA 3 1_555 G DT 8 1_555 H DT 2 1_555 0.149 4.204 -0.414 138.399 -79.973 12.033 1.582 -1.032 -2.007 -44.495 -77.002 159.956 22 GG_DT4DT8:DT2DA3_HH G 4 ? H 3 ? G 8 ? H 2 ? 1 G DT 8 1_555 H DT 2 1_555 G DT 6 1_555 H DA 1 1_555 4.400 -2.605 2.028 -68.287 139.388 15.094 -0.556 -1.871 -3.964 79.338 38.868 155.434 23 GG_DT8DT6:DA1DT2_HH G 8 ? H 2 ? G 6 ? H 1 ? 1 G DT 6 1_555 H DA 1 1_555 I DA 1 1_555 J DT 6 1_555 1.545 3.328 -2.264 163.855 -54.669 10.020 1.369 -1.667 0.213 -28.384 -85.072 172.762 24 GI_DT6DA1:DT6DA1_JH G 6 ? H 1 ? I 1 ? J 6 ? 1 I DA 1 1_555 J DT 6 1_555 I DT 2 1_555 J DA 5 1_555 0.382 -5.374 -0.408 100.068 -144.000 175.881 -2.692 -0.194 -0.242 -72.001 -50.035 179.833 25 II_DA1DT2:DA5DT6_JJ I 1 ? J 6 ? I 2 ? J 5 ? 1 I DT 2 1_555 J DA 5 1_555 I DA 3 1_555 J DT 4 1_555 -2.986 4.967 -0.413 165.745 -66.622 -155.588 -2.480 -1.485 0.573 33.317 82.887 -179.711 26 II_DT2DA3:DT4DA5_JJ I 2 ? J 5 ? I 3 ? J 4 ? 1 I DA 3 1_555 J DT 4 1_555 I DT 4 1_555 J DA 3 1_555 -0.702 -4.544 -1.239 101.089 -143.837 146.874 -2.360 0.289 -0.244 -71.990 -50.594 178.805 27 II_DA3DT4:DA3DT4_JJ I 3 ? J 4 ? I 4 ? J 3 ? 1 I DT 4 1_555 J DA 3 1_555 I DA 5 1_555 J DT 2 1_555 2.449 -4.997 0.708 -160.684 72.621 144.062 -2.500 -1.229 -0.649 36.347 80.423 178.869 28 II_DT4DA5:DT2DA3_JJ I 4 ? J 3 ? I 5 ? J 2 ? 1 I DA 5 1_555 J DT 2 1_555 I DT 6 1_555 J DA 1 1_555 -2.881 -0.587 -4.326 94.175 -150.409 -46.571 -1.126 -2.330 -0.763 75.855 47.495 -177.666 29 II_DA5DT6:DA1DT2_JJ I 5 ? J 2 ? I 6 ? J 1 ? 1 I DT 6 1_555 J DA 1 1_555 K DA 1 1_555 L DT 6 1_555 -1.138 -3.004 2.004 -159.488 56.758 20.732 -1.849 -0.386 0.426 29.851 83.880 169.462 30 IK_DT6DA1:DT6DA1_LJ I 6 ? J 1 ? K 1 ? L 6 ? 1 K DA 1 1_555 L DT 6 1_555 K DT 2 1_555 L DT 8 1_555 -4.748 2.754 -0.888 66.678 -139.945 -41.655 -0.458 -1.972 3.897 77.183 36.774 -156.674 31 KK_DA1DT2:DT8DT6_LL K 1 ? L 6 ? K 2 ? L 8 ? 1 K DT 2 1_555 L DT 8 1_555 K DA 3 1_555 L DT 4 1_555 0.320 -3.874 -0.263 -144.022 84.198 23.209 -1.432 0.724 -2.238 44.752 76.548 167.099 32 KK_DT2DA3:DT4DT8_LL K 2 ? L 8 ? K 3 ? L 4 ? 1 K DA 3 1_555 L DT 4 1_555 K DT 4 1_555 L DA 3 1_555 4.034 -0.079 3.280 -100.351 146.642 85.719 -0.723 -2.484 0.514 73.625 50.384 178.308 33 KK_DA3DT4:DA3DT4_LL K 3 ? L 4 ? K 4 ? L 3 ? 1 K DT 4 1_555 L DA 3 1_555 K DT 8 1_555 L DT 2 1_555 0.118 3.953 -0.725 138.118 -84.196 23.611 1.405 -1.037 -2.064 -45.867 -75.241 162.147 34 KK_DT4DT8:DT2DA3_LL K 4 ? L 3 ? K 8 ? L 2 ? 1 K DT 8 1_555 L DT 2 1_555 K DT 6 1_555 L DA 1 1_555 4.524 -3.007 1.630 -64.136 144.742 31.207 -0.710 -1.937 -3.962 79.588 35.266 159.124 35 KK_DT8DT6:DA1DT2_LL K 8 ? L 2 ? K 6 ? L 1 ? 1 K DT 6 1_555 L DA 1 1_555 M DA 1 1_555 N DT 6 1_555 0.538 -3.855 0.540 -165.135 60.173 134.467 -1.939 -0.300 -0.208 30.143 82.723 178.358 36 KM_DT6DA1:DT6DA1_NL K 6 ? L 1 ? M 1 ? N 6 ? 1 M DA 1 1_555 N DT 6 1_555 M DT 2 1_555 N DT 8 1_555 -4.732 2.834 0.354 64.698 -145.198 -68.859 -0.407 -1.936 3.906 76.734 34.191 -162.677 37 MM_DA1DT2:DT8DT6_NN M 1 ? N 6 ? M 2 ? N 8 ? 1 M DT 2 1_555 N DT 8 1_555 M DA 3 1_555 N DT 4 1_555 -0.304 -3.788 -0.190 -137.595 84.317 7.141 -1.443 0.932 -1.729 46.718 76.239 161.411 38 MM_DT2DA3:DT4DT8_NN M 2 ? N 8 ? M 3 ? N 4 ? 1 M DA 3 1_555 N DT 4 1_555 M DT 4 1_555 N DA 3 1_555 4.729 -1.315 0.856 -96.453 148.208 147.626 -0.696 -2.390 -0.204 74.157 48.261 179.116 39 MM_DA3DT4:DA3DT4_NN M 3 ? N 4 ? M 4 ? N 3 ? 1 M DT 4 1_555 N DA 3 1_555 M DA 5 1_555 N DT 2 1_555 2.334 -4.650 2.339 -161.906 68.872 105.969 -2.445 -1.448 -0.520 34.596 81.329 177.559 40 MM_DT4DA5:DT2DA3_NN M 4 ? N 3 ? M 5 ? N 2 ? 1 M DA 5 1_555 N DT 2 1_555 M DT 6 1_555 N DA 1 1_555 1.089 3.612 3.044 -101.046 146.633 -70.657 -2.420 0.122 -0.161 -73.650 -50.753 -178.431 41 MM_DA5DT6:DA1DT2_NN M 5 ? N 2 ? M 6 ? N 1 ? # _pdbx_initial_refinement_model.accession_code 1RSB _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'D(ATATAT)2 model with Hoogsteen base pairs (from NDB entry UD0049)' # _atom_sites.entry_id 2QS6 _atom_sites.fract_transf_matrix[1][1] 0.008276 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000736 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025291 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013992 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_