data_2QSR # _entry.id 2QSR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QSR RCSB RCSB044008 WWPDB D_1000044008 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-10118d _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2QSR _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-31 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ramagopal, U.A.' 1 ? 'Toro, R.' 2 ? 'Gilmore, M.' 3 ? 'Bain, K.' 4 ? 'Iizuka, M.' 5 ? 'Wasserman, S.' 6 ? 'Rodgers, L.' 7 ? 'Sauder, J.M.' 8 0000-0002-0254-4955 'Burley, S.K.' 9 0000-0002-2487-9713 'Almo, S.C.' 10 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 11 ? # _citation.id primary _citation.title 'Structure of C-terminal domain of transcription-repair coupling factor.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramagopal, U.A.' 1 ? primary 'Toro, R.' 2 ? primary 'Gilmore, M.' 3 ? primary 'Bain, K.' 4 ? primary 'Iizuka, M.' 5 ? primary 'Wasserman, S.' 6 ? primary 'Rodgers, L.' 7 ? primary 'Sauder, J.M.' 8 ? primary 'Burley, S.K.' 9 0000-0002-2487-9713 primary 'Almo, S.C.' 10 ? # _cell.length_a 84.891 _cell.length_b 84.891 _cell.length_c 122.021 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2QSR _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 2QSR _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Transcription-repair coupling factor' _entity.formula_weight 20506.107 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'C-terminal domain: Residues 1007-1168' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLRTKGNAELILQIDAYLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSY LDKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGL(MSE)ELVFDVQNKKDYEILEGLLIFGE SLLEIKESKEKNSEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLRTKGNAELILQIDAYLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYLDKV FVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQNKKDYEILEGLLIFGESLLEIKES KEKNSEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-10118d # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 ARG n 1 5 THR n 1 6 LYS n 1 7 GLY n 1 8 ASN n 1 9 ALA n 1 10 GLU n 1 11 LEU n 1 12 ILE n 1 13 LEU n 1 14 GLN n 1 15 ILE n 1 16 ASP n 1 17 ALA n 1 18 TYR n 1 19 LEU n 1 20 PRO n 1 21 ASP n 1 22 THR n 1 23 TYR n 1 24 ILE n 1 25 SER n 1 26 ASP n 1 27 GLN n 1 28 ARG n 1 29 HIS n 1 30 LYS n 1 31 ILE n 1 32 GLU n 1 33 ILE n 1 34 TYR n 1 35 LYS n 1 36 LYS n 1 37 ILE n 1 38 ARG n 1 39 GLN n 1 40 ILE n 1 41 ASP n 1 42 ASN n 1 43 ARG n 1 44 VAL n 1 45 ASN n 1 46 TYR n 1 47 GLU n 1 48 GLU n 1 49 LEU n 1 50 GLN n 1 51 GLU n 1 52 GLU n 1 53 LEU n 1 54 ILE n 1 55 ASP n 1 56 ARG n 1 57 PHE n 1 58 GLY n 1 59 GLU n 1 60 TYR n 1 61 PRO n 1 62 ASP n 1 63 VAL n 1 64 VAL n 1 65 ALA n 1 66 TYR n 1 67 LEU n 1 68 LEU n 1 69 GLU n 1 70 ILE n 1 71 GLY n 1 72 LEU n 1 73 VAL n 1 74 LYS n 1 75 SER n 1 76 TYR n 1 77 LEU n 1 78 ASP n 1 79 LYS n 1 80 VAL n 1 81 PHE n 1 82 VAL n 1 83 GLN n 1 84 ARG n 1 85 VAL n 1 86 GLU n 1 87 ARG n 1 88 LYS n 1 89 ASP n 1 90 ASN n 1 91 LYS n 1 92 ILE n 1 93 THR n 1 94 ILE n 1 95 GLN n 1 96 PHE n 1 97 GLU n 1 98 LYS n 1 99 VAL n 1 100 THR n 1 101 GLN n 1 102 ARG n 1 103 LEU n 1 104 PHE n 1 105 LEU n 1 106 ALA n 1 107 GLN n 1 108 ASP n 1 109 TYR n 1 110 PHE n 1 111 LYS n 1 112 ALA n 1 113 LEU n 1 114 SER n 1 115 VAL n 1 116 THR n 1 117 ASN n 1 118 LEU n 1 119 LYS n 1 120 ALA n 1 121 GLY n 1 122 ILE n 1 123 ALA n 1 124 GLU n 1 125 ASN n 1 126 LYS n 1 127 GLY n 1 128 LEU n 1 129 MSE n 1 130 GLU n 1 131 LEU n 1 132 VAL n 1 133 PHE n 1 134 ASP n 1 135 VAL n 1 136 GLN n 1 137 ASN n 1 138 LYS n 1 139 LYS n 1 140 ASP n 1 141 TYR n 1 142 GLU n 1 143 ILE n 1 144 LEU n 1 145 GLU n 1 146 GLY n 1 147 LEU n 1 148 LEU n 1 149 ILE n 1 150 PHE n 1 151 GLY n 1 152 GLU n 1 153 SER n 1 154 LEU n 1 155 LEU n 1 156 GLU n 1 157 ILE n 1 158 LYS n 1 159 GLU n 1 160 SER n 1 161 LYS n 1 162 GLU n 1 163 LYS n 1 164 ASN n 1 165 SER n 1 166 GLU n 1 167 GLY n 1 168 HIS n 1 169 HIS n 1 170 HIS n 1 171 HIS n 1 172 HIS n 1 173 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptococcus _entity_src_gen.pdbx_gene_src_gene 'mfd, spr0006' _entity_src_gen.gene_src_species 'Streptococcus pneumoniae' _entity_src_gen.gene_src_strain R6 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 171101 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-255 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BS-pSGX4(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8DRQ1_STRR6 _struct_ref.pdbx_db_accession Q8DRQ1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RTKGNAELILQIDAYLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYLDKVFVQ RVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQNKKDYEILEGLLIFGESLLEIKESKEK NS ; _struct_ref.pdbx_align_begin 1007 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QSR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 165 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8DRQ1 _struct_ref_seq.db_align_beg 1007 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1007 _struct_ref_seq.pdbx_auth_seq_align_end 1168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QSR MSE A 1 ? UNP Q8DRQ1 ? ? 'expression tag' 1004 1 1 2QSR SER A 2 ? UNP Q8DRQ1 ? ? 'expression tag' 1005 2 1 2QSR LEU A 3 ? UNP Q8DRQ1 ? ? 'expression tag' 1006 3 1 2QSR GLU A 166 ? UNP Q8DRQ1 ? ? 'expression tag' 1169 4 1 2QSR GLY A 167 ? UNP Q8DRQ1 ? ? 'expression tag' 1170 5 1 2QSR HIS A 168 ? UNP Q8DRQ1 ? ? 'expression tag' 1171 6 1 2QSR HIS A 169 ? UNP Q8DRQ1 ? ? 'expression tag' 1172 7 1 2QSR HIS A 170 ? UNP Q8DRQ1 ? ? 'expression tag' 1173 8 1 2QSR HIS A 171 ? UNP Q8DRQ1 ? ? 'expression tag' 1174 9 1 2QSR HIS A 172 ? UNP Q8DRQ1 ? ? 'expression tag' 1175 10 1 2QSR HIS A 173 ? UNP Q8DRQ1 ? ? 'expression tag' 1176 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QSR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '1.6 M Sodium citrate pH 6.5, temperature 298K, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-02-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.97930 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 2QSR _reflns.d_resolution_high 3.100 _reflns.d_resolution_low 50.000 _reflns.number_obs 5156 _reflns.pdbx_Rmerge_I_obs 0.127 _reflns.pdbx_netI_over_sigmaI 4.600 _reflns.pdbx_chi_squared 0.718 _reflns.pdbx_redundancy 19.400 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 5156 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.21 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.817 _reflns_shell.meanI_over_sigI_obs 3.24 _reflns_shell.pdbx_Rsym_value 0.707 _reflns_shell.pdbx_chi_squared 0.484 _reflns_shell.pdbx_redundancy 19.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 493 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QSR _refine.ls_d_res_high 3.100 _refine.ls_d_res_low 42.450 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.860 _refine.ls_number_reflns_obs 5117 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.243 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 234 _refine.B_iso_mean 49.754 _refine.aniso_B[1][1] -0.450 _refine.aniso_B[2][2] -0.450 _refine.aniso_B[3][3] 0.670 _refine.aniso_B[1][2] -0.220 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.pdbx_overall_ESU_R_Free 0.400 _refine.overall_SU_ML 0.310 _refine.overall_SU_B 40.316 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 5117 _refine.ls_R_factor_all 0.187 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1329 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1329 _refine_hist.d_res_high 3.100 _refine_hist.d_res_low 42.450 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1347 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1810 1.116 1.988 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 160 5.624 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 68 30.160 25.147 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 272 20.022 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 16.060 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 206 0.080 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 987 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 672 0.275 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 950 0.351 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 96 0.168 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 34 0.345 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.351 0.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 805 5.223 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1294 7.773 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 582 6.656 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 516 10.020 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 3.10 _refine_ls_shell.d_res_low 3.18 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 336 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.249 _refine_ls_shell.R_factor_R_free 0.528 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 357 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QSR _struct.title 'Crystal structure of C-terminal domain of transcription-repair coupling factor' _struct.pdbx_descriptor 'Transcription-repair coupling factor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QSR _struct_keywords.text ;structural genomics, Transcription-repair, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, ATP-binding, Helicase, Hydrolase, Nucleotide-binding, TRANSCRIPTION ; _struct_keywords.pdbx_keywords TRANSCRIPTION # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 26 ? GLN A 39 ? ASP A 1029 GLN A 1042 1 ? 14 HELX_P HELX_P2 2 ASN A 42 ? GLY A 58 ? ASN A 1045 GLY A 1061 1 ? 17 HELX_P HELX_P3 3 PRO A 61 ? VAL A 80 ? PRO A 1064 VAL A 1083 1 ? 20 HELX_P HELX_P4 4 VAL A 99 ? PHE A 104 ? VAL A 1102 PHE A 1107 1 ? 6 HELX_P HELX_P5 5 LEU A 105 ? SER A 114 ? LEU A 1108 SER A 1117 1 ? 10 HELX_P HELX_P6 6 LYS A 139 ? SER A 160 ? LYS A 1142 SER A 1163 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 128 C ? ? ? 1_555 A MSE 129 N ? ? A LEU 1131 A MSE 1132 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 129 C ? ? ? 1_555 A GLU 130 N ? ? A MSE 1132 A GLU 1133 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 10 ? ILE A 12 ? GLU A 1013 ILE A 1015 A 2 VAL A 82 ? ARG A 87 ? VAL A 1085 ARG A 1090 A 3 LYS A 91 ? PHE A 96 ? LYS A 1094 PHE A 1099 A 4 LEU A 128 ? ASP A 134 ? LEU A 1131 ASP A 1137 A 5 LYS A 119 ? ASN A 125 ? LYS A 1122 ASN A 1128 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 12 ? N ILE A 1015 O VAL A 85 ? O VAL A 1088 A 2 3 N ARG A 84 ? N ARG A 1087 O GLN A 95 ? O GLN A 1098 A 3 4 N ILE A 92 ? N ILE A 1095 O PHE A 133 ? O PHE A 1136 A 4 5 O GLU A 130 ? O GLU A 1133 N ALA A 123 ? N ALA A 1126 # _atom_sites.entry_id 2QSR _atom_sites.fract_transf_matrix[1][1] 0.011780 _atom_sites.fract_transf_matrix[1][2] 0.006801 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008195 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1004 ? ? ? A . n A 1 2 SER 2 1005 1005 SER SER A . n A 1 3 LEU 3 1006 1006 LEU LEU A . n A 1 4 ARG 4 1007 1007 ARG ARG A . n A 1 5 THR 5 1008 1008 THR THR A . n A 1 6 LYS 6 1009 1009 LYS LYS A . n A 1 7 GLY 7 1010 1010 GLY GLY A . n A 1 8 ASN 8 1011 1011 ASN ASN A . n A 1 9 ALA 9 1012 1012 ALA ALA A . n A 1 10 GLU 10 1013 1013 GLU GLU A . n A 1 11 LEU 11 1014 1014 LEU LEU A . n A 1 12 ILE 12 1015 1015 ILE ILE A . n A 1 13 LEU 13 1016 1016 LEU LEU A . n A 1 14 GLN 14 1017 1017 GLN GLN A . n A 1 15 ILE 15 1018 1018 ILE ILE A . n A 1 16 ASP 16 1019 1019 ASP ASP A . n A 1 17 ALA 17 1020 1020 ALA ALA A . n A 1 18 TYR 18 1021 1021 TYR TYR A . n A 1 19 LEU 19 1022 1022 LEU LEU A . n A 1 20 PRO 20 1023 1023 PRO PRO A . n A 1 21 ASP 21 1024 1024 ASP ASP A . n A 1 22 THR 22 1025 1025 THR THR A . n A 1 23 TYR 23 1026 1026 TYR TYR A . n A 1 24 ILE 24 1027 1027 ILE ILE A . n A 1 25 SER 25 1028 1028 SER SER A . n A 1 26 ASP 26 1029 1029 ASP ASP A . n A 1 27 GLN 27 1030 1030 GLN GLN A . n A 1 28 ARG 28 1031 1031 ARG ARG A . n A 1 29 HIS 29 1032 1032 HIS HIS A . n A 1 30 LYS 30 1033 1033 LYS LYS A . n A 1 31 ILE 31 1034 1034 ILE ILE A . n A 1 32 GLU 32 1035 1035 GLU GLU A . n A 1 33 ILE 33 1036 1036 ILE ILE A . n A 1 34 TYR 34 1037 1037 TYR TYR A . n A 1 35 LYS 35 1038 1038 LYS LYS A . n A 1 36 LYS 36 1039 1039 LYS LYS A . n A 1 37 ILE 37 1040 1040 ILE ILE A . n A 1 38 ARG 38 1041 1041 ARG ARG A . n A 1 39 GLN 39 1042 1042 GLN GLN A . n A 1 40 ILE 40 1043 1043 ILE ILE A . n A 1 41 ASP 41 1044 1044 ASP ASP A . n A 1 42 ASN 42 1045 1045 ASN ASN A . n A 1 43 ARG 43 1046 1046 ARG ARG A . n A 1 44 VAL 44 1047 1047 VAL VAL A . n A 1 45 ASN 45 1048 1048 ASN ASN A . n A 1 46 TYR 46 1049 1049 TYR TYR A . n A 1 47 GLU 47 1050 1050 GLU GLU A . n A 1 48 GLU 48 1051 1051 GLU GLU A . n A 1 49 LEU 49 1052 1052 LEU LEU A . n A 1 50 GLN 50 1053 1053 GLN GLN A . n A 1 51 GLU 51 1054 1054 GLU GLU A . n A 1 52 GLU 52 1055 1055 GLU GLU A . n A 1 53 LEU 53 1056 1056 LEU LEU A . n A 1 54 ILE 54 1057 1057 ILE ILE A . n A 1 55 ASP 55 1058 1058 ASP ASP A . n A 1 56 ARG 56 1059 1059 ARG ARG A . n A 1 57 PHE 57 1060 1060 PHE PHE A . n A 1 58 GLY 58 1061 1061 GLY GLY A . n A 1 59 GLU 59 1062 1062 GLU GLU A . n A 1 60 TYR 60 1063 1063 TYR TYR A . n A 1 61 PRO 61 1064 1064 PRO PRO A . n A 1 62 ASP 62 1065 1065 ASP ASP A . n A 1 63 VAL 63 1066 1066 VAL VAL A . n A 1 64 VAL 64 1067 1067 VAL VAL A . n A 1 65 ALA 65 1068 1068 ALA ALA A . n A 1 66 TYR 66 1069 1069 TYR TYR A . n A 1 67 LEU 67 1070 1070 LEU LEU A . n A 1 68 LEU 68 1071 1071 LEU LEU A . n A 1 69 GLU 69 1072 1072 GLU GLU A . n A 1 70 ILE 70 1073 1073 ILE ILE A . n A 1 71 GLY 71 1074 1074 GLY GLY A . n A 1 72 LEU 72 1075 1075 LEU LEU A . n A 1 73 VAL 73 1076 1076 VAL VAL A . n A 1 74 LYS 74 1077 1077 LYS LYS A . n A 1 75 SER 75 1078 1078 SER SER A . n A 1 76 TYR 76 1079 1079 TYR TYR A . n A 1 77 LEU 77 1080 1080 LEU LEU A . n A 1 78 ASP 78 1081 1081 ASP ASP A . n A 1 79 LYS 79 1082 1082 LYS LYS A . n A 1 80 VAL 80 1083 1083 VAL VAL A . n A 1 81 PHE 81 1084 1084 PHE PHE A . n A 1 82 VAL 82 1085 1085 VAL VAL A . n A 1 83 GLN 83 1086 1086 GLN GLN A . n A 1 84 ARG 84 1087 1087 ARG ARG A . n A 1 85 VAL 85 1088 1088 VAL VAL A . n A 1 86 GLU 86 1089 1089 GLU GLU A . n A 1 87 ARG 87 1090 1090 ARG ARG A . n A 1 88 LYS 88 1091 1091 LYS LYS A . n A 1 89 ASP 89 1092 1092 ASP ASP A . n A 1 90 ASN 90 1093 1093 ASN ASN A . n A 1 91 LYS 91 1094 1094 LYS LYS A . n A 1 92 ILE 92 1095 1095 ILE ILE A . n A 1 93 THR 93 1096 1096 THR THR A . n A 1 94 ILE 94 1097 1097 ILE ILE A . n A 1 95 GLN 95 1098 1098 GLN GLN A . n A 1 96 PHE 96 1099 1099 PHE PHE A . n A 1 97 GLU 97 1100 1100 GLU GLU A . n A 1 98 LYS 98 1101 1101 LYS LYS A . n A 1 99 VAL 99 1102 1102 VAL VAL A . n A 1 100 THR 100 1103 1103 THR THR A . n A 1 101 GLN 101 1104 1104 GLN GLN A . n A 1 102 ARG 102 1105 1105 ARG ARG A . n A 1 103 LEU 103 1106 1106 LEU LEU A . n A 1 104 PHE 104 1107 1107 PHE PHE A . n A 1 105 LEU 105 1108 1108 LEU LEU A . n A 1 106 ALA 106 1109 1109 ALA ALA A . n A 1 107 GLN 107 1110 1110 GLN GLN A . n A 1 108 ASP 108 1111 1111 ASP ASP A . n A 1 109 TYR 109 1112 1112 TYR TYR A . n A 1 110 PHE 110 1113 1113 PHE PHE A . n A 1 111 LYS 111 1114 1114 LYS LYS A . n A 1 112 ALA 112 1115 1115 ALA ALA A . n A 1 113 LEU 113 1116 1116 LEU LEU A . n A 1 114 SER 114 1117 1117 SER SER A . n A 1 115 VAL 115 1118 1118 VAL VAL A . n A 1 116 THR 116 1119 1119 THR THR A . n A 1 117 ASN 117 1120 1120 ASN ASN A . n A 1 118 LEU 118 1121 1121 LEU LEU A . n A 1 119 LYS 119 1122 1122 LYS LYS A . n A 1 120 ALA 120 1123 1123 ALA ALA A . n A 1 121 GLY 121 1124 1124 GLY GLY A . n A 1 122 ILE 122 1125 1125 ILE ILE A . n A 1 123 ALA 123 1126 1126 ALA ALA A . n A 1 124 GLU 124 1127 1127 GLU GLU A . n A 1 125 ASN 125 1128 1128 ASN ASN A . n A 1 126 LYS 126 1129 1129 LYS LYS A . n A 1 127 GLY 127 1130 1130 GLY GLY A . n A 1 128 LEU 128 1131 1131 LEU LEU A . n A 1 129 MSE 129 1132 1132 MSE MSE A . n A 1 130 GLU 130 1133 1133 GLU GLU A . n A 1 131 LEU 131 1134 1134 LEU LEU A . n A 1 132 VAL 132 1135 1135 VAL VAL A . n A 1 133 PHE 133 1136 1136 PHE PHE A . n A 1 134 ASP 134 1137 1137 ASP ASP A . n A 1 135 VAL 135 1138 1138 VAL VAL A . n A 1 136 GLN 136 1139 1139 GLN GLN A . n A 1 137 ASN 137 1140 1140 ASN ASN A . n A 1 138 LYS 138 1141 1141 LYS LYS A . n A 1 139 LYS 139 1142 1142 LYS LYS A . n A 1 140 ASP 140 1143 1143 ASP ASP A . n A 1 141 TYR 141 1144 1144 TYR TYR A . n A 1 142 GLU 142 1145 1145 GLU GLU A . n A 1 143 ILE 143 1146 1146 ILE ILE A . n A 1 144 LEU 144 1147 1147 LEU LEU A . n A 1 145 GLU 145 1148 1148 GLU GLU A . n A 1 146 GLY 146 1149 1149 GLY GLY A . n A 1 147 LEU 147 1150 1150 LEU LEU A . n A 1 148 LEU 148 1151 1151 LEU LEU A . n A 1 149 ILE 149 1152 1152 ILE ILE A . n A 1 150 PHE 150 1153 1153 PHE PHE A . n A 1 151 GLY 151 1154 1154 GLY GLY A . n A 1 152 GLU 152 1155 1155 GLU GLU A . n A 1 153 SER 153 1156 1156 SER SER A . n A 1 154 LEU 154 1157 1157 LEU LEU A . n A 1 155 LEU 155 1158 1158 LEU LEU A . n A 1 156 GLU 156 1159 1159 GLU GLU A . n A 1 157 ILE 157 1160 1160 ILE ILE A . n A 1 158 LYS 158 1161 1161 LYS LYS A . n A 1 159 GLU 159 1162 1162 GLU GLU A . n A 1 160 SER 160 1163 1163 SER SER A . n A 1 161 LYS 161 1164 1164 LYS LYS A . n A 1 162 GLU 162 1165 1165 GLU GLU A . n A 1 163 LYS 163 1166 ? ? ? A . n A 1 164 ASN 164 1167 ? ? ? A . n A 1 165 SER 165 1168 ? ? ? A . n A 1 166 GLU 166 1169 ? ? ? A . n A 1 167 GLY 167 1170 ? ? ? A . n A 1 168 HIS 168 1171 ? ? ? A . n A 1 169 HIS 169 1172 ? ? ? A . n A 1 170 HIS 170 1173 ? ? ? A . n A 1 171 HIS 171 1174 ? ? ? A . n A 1 172 HIS 172 1175 ? ? ? A . n A 1 173 HIS 173 1176 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 129 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 1132 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2018-11-14 5 'Structure model' 1 4 2021-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' audit_author 4 5 'Structure model' citation_author 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_audit_author.identifier_ORCID' 11 5 'Structure model' '_audit_author.identifier_ORCID' 12 5 'Structure model' '_citation_author.identifier_ORCID' 13 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 5 'Structure model' '_struct_ref_seq_dif.details' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 3.100 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 5156 _diffrn_reflns.pdbx_Rmerge_I_obs 0.127 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.72 _diffrn_reflns.av_sigmaI_over_netI 4.60 _diffrn_reflns.pdbx_redundancy 19.40 _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.number 99779 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 6.67 50.00 ? ? 0.053 ? 1.258 16.50 99.80 1 5.30 6.67 ? ? 0.086 ? 0.672 19.40 100.00 1 4.63 5.30 ? ? 0.083 ? 0.660 19.80 100.00 1 4.21 4.63 ? ? 0.119 ? 0.935 20.20 100.00 1 3.91 4.21 ? ? 0.133 ? 0.628 20.40 100.00 1 3.68 3.91 ? ? 0.208 ? 0.803 20.00 100.00 1 3.49 3.68 ? ? 0.280 ? 0.664 19.80 100.00 1 3.34 3.49 ? ? 0.429 ? 0.539 19.50 100.00 1 3.21 3.34 ? ? 0.579 ? 0.518 19.30 99.80 1 3.10 3.21 ? ? 0.817 ? 0.484 19.10 100.00 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 33.0500 44.1020 59.1770 0.2028 -0.0888 0.2603 0.0772 -0.0257 -0.0193 5.5799 3.4197 6.9947 -0.6368 3.1946 1.1577 0.0704 0.1526 -0.2231 0.8955 -0.1743 -0.3597 -0.0505 0.5209 0.8740 'X-RAY DIFFRACTION' 2 ? refined 33.8260 41.7090 45.8630 -0.0176 0.2068 0.2323 0.0538 0.0216 -0.0984 2.5870 8.3325 9.2302 3.0734 1.9651 5.1167 -0.3724 0.6972 -0.3248 0.7213 -0.3737 -0.6331 -0.4804 0.4276 1.1933 'X-RAY DIFFRACTION' 3 ? refined 28.3690 56.4440 63.5200 -0.0781 -0.0914 0.1923 0.0336 -0.0134 0.0181 5.7041 5.5426 5.7596 1.6391 2.1846 1.2448 0.1311 -0.0604 -0.0707 -0.1936 0.1160 0.0378 0.2966 -0.2704 -0.2391 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 A 16 ? A 1005 A 1019 'X-RAY DIFFRACTION' ? 2 2 A 17 A 79 ? A 1020 A 1082 'X-RAY DIFFRACTION' ? 3 3 A 80 A 162 ? A 1083 A 1165 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 SHELXE . ? ? ? ? 'model building' ? ? ? 8 RESOLVE . ? ? ? ? phasing ? ? ? 9 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 SEE REMARK 350 FOR THE PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS POLYPEPTIDE IS UNKNOWN. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 1006 ? ? 60.12 -26.66 2 1 TYR A 1021 ? ? -177.85 -179.50 3 1 ASN A 1048 ? ? -52.45 -77.88 4 1 TYR A 1049 ? ? -18.54 -65.53 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 1054 ? CD ? A GLU 51 CD 2 1 Y 1 A GLU 1054 ? OE1 ? A GLU 51 OE1 3 1 Y 1 A GLU 1054 ? OE2 ? A GLU 51 OE2 4 1 Y 1 A GLU 1127 ? CD ? A GLU 124 CD 5 1 Y 1 A GLU 1127 ? OE1 ? A GLU 124 OE1 6 1 Y 1 A GLU 1127 ? OE2 ? A GLU 124 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1004 ? A MSE 1 2 1 Y 1 A LYS 1166 ? A LYS 163 3 1 Y 1 A ASN 1167 ? A ASN 164 4 1 Y 1 A SER 1168 ? A SER 165 5 1 Y 1 A GLU 1169 ? A GLU 166 6 1 Y 1 A GLY 1170 ? A GLY 167 7 1 Y 1 A HIS 1171 ? A HIS 168 8 1 Y 1 A HIS 1172 ? A HIS 169 9 1 Y 1 A HIS 1173 ? A HIS 170 10 1 Y 1 A HIS 1174 ? A HIS 171 11 1 Y 1 A HIS 1175 ? A HIS 172 12 1 Y 1 A HIS 1176 ? A HIS 173 #