HEADER NUCLEOTIDE BINDING PROTEIN 02-AUG-07 2QTF TITLE CRYSTAL STRUCTURE OF A GTP-BINDING PROTEIN FROM THE HYPERTHERMOPHILIC TITLE 2 ARCHAEON SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN HFLX; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_COMMON: ARCHAEA; SOURCE 4 STRAIN: P2, DSM 1617, JCM 11322; SOURCE 5 ATCC: 35092; SOURCE 6 GENE: HFLX, SSO0269; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS BETA-ALPHA-BARRELS, GTP-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.WU,L.SUN,S.J.BROUNS,S.FU,Z.RAO,J.VAN DER OOST REVDAT 4 21-FEB-24 2QTF 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 2QTF 1 REMARK REVDAT 2 24-FEB-09 2QTF 1 VERSN REVDAT 1 19-AUG-08 2QTF 0 JRNL AUTH H.WU,L.SUN,S.J.BROUNS,S.FU,J.AKERBOOM,X.LI,C.ZHANG,Z.RAO, JRNL AUTH 2 J.VAN DER OOST JRNL TITL CRYSTAL STRUCTURE OF A GTP-BINDING PROTEIN FROM THE JRNL TITL 2 HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS SOLFATARICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0022 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 30617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2551 ; 0.033 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3429 ; 2.287 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 6.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;35.862 ;24.747 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 523 ;15.822 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.970 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.183 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1786 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1182 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1789 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.260 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.300 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.114 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1671 ; 2.078 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2534 ; 2.787 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1073 ; 4.449 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 895 ; 6.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30618 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25600 REMARK 200 FOR SHELL : 9.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CADMIUM SULFATE, 0.1M HEPES, REMARK 280 0.8M SODIUM ACETATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.53650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.96400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.96400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.53650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 123 REMARK 465 THR A 124 REMARK 465 LYS A 125 REMARK 465 SER A 126 REMARK 465 LYS A 127 REMARK 465 ILE A 128 REMARK 465 GLY A 129 REMARK 465 GLU A 130 REMARK 465 GLN A 131 REMARK 465 GLN A 132 REMARK 465 GLY A 133 REMARK 465 PRO A 134 REMARK 465 LEU A 135 REMARK 465 GLY A 136 REMARK 465 ALA A 137 REMARK 465 GLY A 138 REMARK 465 THR A 139 REMARK 465 TYR A 140 REMARK 465 GLY A 141 REMARK 465 VAL A 142 REMARK 465 GLU A 143 REMARK 465 PHE A 166 REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 SER A 170 REMARK 465 ILE A 171 REMARK 465 GLU A 172 REMARK 465 SER A 173 REMARK 465 ASN A 174 REMARK 465 LYS A 175 REMARK 465 ARG A 176 REMARK 465 ASN A 177 REMARK 465 ASN A 178 REMARK 465 THR A 203 REMARK 465 GLN A 204 REMARK 465 LYS A 205 REMARK 465 VAL A 206 REMARK 465 ASP A 207 REMARK 465 THR A 208 REMARK 465 LYS A 209 REMARK 465 LEU A 210 REMARK 465 PHE A 211 REMARK 465 THR A 212 REMARK 465 THR A 213 REMARK 465 LEU A 357 REMARK 465 GLU A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 605 O HOH A 766 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 342 CD CD A 401 4565 2.08 REMARK 500 O HOH A 671 O HOH A 767 4565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 24 CB ASN A 24 CG 0.161 REMARK 500 VAL A 27 CB VAL A 27 CG2 0.130 REMARK 500 GLU A 55 CG GLU A 55 CD 0.100 REMARK 500 GLU A 82 CG GLU A 82 CD 0.096 REMARK 500 GLU A 82 CD GLU A 82 OE1 0.082 REMARK 500 LYS A 217 CE LYS A 217 NZ 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 46 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 232 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 LEU A 341 CB - CG - CD1 ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 42 -69.09 66.81 REMARK 500 SER A 215 133.48 -174.82 REMARK 500 ASN A 224 -119.73 53.01 REMARK 500 ASN A 306 71.76 45.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 92 OE1 REMARK 620 2 GLU A 92 OE2 58.0 REMARK 620 3 HOH A 622 O 73.1 127.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 402 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 NE2 REMARK 620 2 ASP A 232 OD1 94.2 REMARK 620 3 ASP A 232 OD2 90.8 55.0 REMARK 620 4 HOH A 616 O 88.4 77.4 132.1 REMARK 620 5 HOH A 661 O 94.9 132.9 78.8 148.9 REMARK 620 6 HOH A 698 O 84.3 151.5 153.3 74.1 75.5 REMARK 620 7 HOH A 770 O 172.1 83.4 93.9 83.8 92.2 94.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 403 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 283 OE1 REMARK 620 2 HOH A 632 O 93.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QTH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH GDP DBREF 2QTF A 1 356 UNP Q980M3 Q980M3_SULSO 1 356 SEQADV 2QTF LEU A 357 UNP Q980M3 EXPRESSION TAG SEQADV 2QTF GLU A 358 UNP Q980M3 EXPRESSION TAG SEQADV 2QTF HIS A 359 UNP Q980M3 EXPRESSION TAG SEQADV 2QTF HIS A 360 UNP Q980M3 EXPRESSION TAG SEQADV 2QTF HIS A 361 UNP Q980M3 EXPRESSION TAG SEQADV 2QTF HIS A 362 UNP Q980M3 EXPRESSION TAG SEQADV 2QTF HIS A 363 UNP Q980M3 EXPRESSION TAG SEQADV 2QTF HIS A 364 UNP Q980M3 EXPRESSION TAG SEQRES 1 A 364 MET LYS THR ALA ALA LEU PHE VAL SER LYS GLU PHE GLU SEQRES 2 A 364 GLU GLU ALA ILE ALA LEU VAL GLU GLY ALA ASN TYR LYS SEQRES 3 A 364 VAL THR SER ILE TYR LYS LEU PRO LYS SER PRO ASN VAL SEQRES 4 A 364 LYS PHE TYR ILE GLN TYR ASP LYS LEU GLN GLN ILE LYS SEQRES 5 A 364 ASN ASP GLU GLU ILE SER THR LEU ILE ILE PHE GLU GLN SEQRES 6 A 364 LEU LYS PRO ARG HIS PHE ILE ASN ILE ARG ARG GLU LEU SEQRES 7 A 364 LYS GLY LYS GLU VAL LEU ASP LYS ILE LEU LEU LEU LEU SEQRES 8 A 364 GLU ILE PHE ALA LEU HIS ALA GLY SER LYS GLU ALA LYS SEQRES 9 A 364 MET GLN ILE GLU LEU ALA ARG LEU LYS TYR GLU LEU PRO SEQRES 10 A 364 ILE ILE LYS GLU THR TYR THR LYS SER LYS ILE GLY GLU SEQRES 11 A 364 GLN GLN GLY PRO LEU GLY ALA GLY THR TYR GLY VAL GLU SEQRES 12 A 364 SER THR ILE LYS PHE TYR LYS ARG ARG ILE ASN LYS LEU SEQRES 13 A 364 MET LYS GLU LEU GLU SER ILE LYS ILE PHE LYS GLU LYS SEQRES 14 A 364 SER ILE GLU SER ASN LYS ARG ASN ASN ILE PRO SER ILE SEQRES 15 A 364 GLY ILE VAL GLY TYR THR ASN SER GLY LYS THR SER LEU SEQRES 16 A 364 PHE ASN SER LEU THR GLY LEU THR GLN LYS VAL ASP THR SEQRES 17 A 364 LYS LEU PHE THR THR MET SER PRO LYS ARG TYR ALA ILE SEQRES 18 A 364 PRO ILE ASN ASN ARG LYS ILE MET LEU VAL ASP THR VAL SEQRES 19 A 364 GLY PHE ILE ARG GLY ILE PRO PRO GLN ILE VAL ASP ALA SEQRES 20 A 364 PHE PHE VAL THR LEU SER GLU ALA LYS TYR SER ASP ALA SEQRES 21 A 364 LEU ILE LEU VAL ILE ASP SER THR PHE SER GLU ASN LEU SEQRES 22 A 364 LEU ILE GLU THR LEU GLN SER SER PHE GLU ILE LEU ARG SEQRES 23 A 364 GLU ILE GLY VAL SER GLY LYS PRO ILE LEU VAL THR LEU SEQRES 24 A 364 ASN LYS ILE ASP LYS ILE ASN GLY ASP LEU TYR LYS LYS SEQRES 25 A 364 LEU ASP LEU VAL GLU LYS LEU SER LYS GLU LEU TYR SER SEQRES 26 A 364 PRO ILE PHE ASP VAL ILE PRO ILE SER ALA LEU LYS ARG SEQRES 27 A 364 THR ASN LEU GLU LEU LEU ARG ASP LYS ILE TYR GLN LEU SEQRES 28 A 364 ALA THR GLN LEU SER LEU GLU HIS HIS HIS HIS HIS HIS HET CD A 401 1 HET CD A 402 1 HET CD A 403 1 HET CD A 404 1 HET SO4 A 501 5 HET ACT A 600 4 HET ACT A 601 4 HET ACT A 602 4 HETNAM CD CADMIUM ION HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 2 CD 4(CD 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 10 HOH *169(H2 O) HELIX 1 1 PHE A 12 ALA A 23 1 12 HELIX 2 2 GLN A 44 ASN A 53 1 10 HELIX 3 3 LYS A 67 LYS A 79 1 13 HELIX 4 4 ASP A 85 ALA A 98 1 14 HELIX 5 5 SER A 100 THR A 122 1 23 HELIX 6 6 SER A 144 ILE A 165 1 22 HELIX 7 7 GLY A 191 GLY A 201 1 11 HELIX 8 8 PRO A 241 GLN A 243 5 3 HELIX 9 9 ILE A 244 GLU A 254 1 11 HELIX 10 10 ALA A 255 SER A 258 5 4 HELIX 11 11 SER A 270 GLY A 289 1 20 HELIX 12 12 LYS A 301 ILE A 305 5 5 HELIX 13 13 ASP A 308 TYR A 324 1 17 HELIX 14 14 ASN A 340 SER A 356 1 17 SHEET 1 A 4 TYR A 25 TYR A 31 0 SHEET 2 A 4 LYS A 2 PHE A 7 1 N LYS A 2 O LYS A 26 SHEET 3 A 4 THR A 59 ILE A 62 1 O ILE A 61 N ALA A 5 SHEET 4 A 4 GLU A 82 LEU A 84 1 O GLU A 82 N LEU A 60 SHEET 1 B 6 ARG A 218 ILE A 223 0 SHEET 2 B 6 ARG A 226 ASP A 232 -1 O ARG A 226 N ILE A 223 SHEET 3 B 6 SER A 181 VAL A 185 1 N ILE A 182 O MET A 229 SHEET 4 B 6 ALA A 260 ASP A 266 1 O ILE A 262 N GLY A 183 SHEET 5 B 6 ILE A 295 ASN A 300 1 O THR A 298 N LEU A 263 SHEET 6 B 6 ILE A 327 PRO A 332 1 O ASP A 329 N VAL A 297 LINK OE1 GLU A 92 CD CD A 401 1555 1555 2.43 LINK OE2 GLU A 92 CD CD A 401 1555 1555 2.23 LINK NE2 HIS A 97 CD CD A 402 1555 1555 2.25 LINK OD1 ASP A 232 CD CD A 402 1555 1555 2.41 LINK OD2 ASP A 232 CD CD A 402 1555 1555 2.29 LINK OE1 GLU A 283 CD CD A 403 1555 1555 2.17 LINK CD CD A 401 O HOH A 622 1555 1555 2.48 LINK CD CD A 402 O HOH A 616 1555 1555 2.42 LINK CD CD A 402 O HOH A 661 1555 1555 2.41 LINK CD CD A 402 O HOH A 698 1555 1555 2.49 LINK CD CD A 402 O HOH A 770 1555 1555 2.29 LINK CD CD A 403 O HOH A 632 1555 1555 2.45 LINK CD CD A 404 O HOH A 771 1555 1555 2.58 CISPEP 1 SER A 215 PRO A 216 0 -7.03 CISPEP 2 SER A 325 PRO A 326 0 0.74 SITE 1 AC1 5 GLU A 92 GLU A 342 ASP A 346 HOH A 622 SITE 2 AC1 5 HOH A 769 SITE 1 AC2 6 HIS A 97 ASP A 232 HOH A 616 HOH A 661 SITE 2 AC2 6 HOH A 698 HOH A 770 SITE 1 AC3 4 GLU A 77 GLU A 283 HOH A 632 HOH A 712 SITE 1 AC4 5 GLU A 108 PRO A 222 HOH A 637 HOH A 644 SITE 2 AC4 5 HOH A 771 SITE 1 AC5 8 TYR A 187 ASN A 189 SER A 190 GLY A 191 SITE 2 AC5 8 LYS A 192 THR A 193 HOH A 612 HOH A 754 SITE 1 AC6 5 THR A 188 LYS A 192 GLY A 235 HOH A 616 SITE 2 AC6 5 HOH A 698 SITE 1 AC7 4 LYS A 47 GLN A 50 ASP A 246 HOH A 760 CRYST1 65.073 72.560 95.928 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015367 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010424 0.00000