HEADER HYDROLASE 07-AUG-07 2QV1 TITLE CRYSTAL STRUCTURE OF HCV NS3-4A V36M MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HCV PROTEASE DOMAIN NS3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 STRAIN: H; SOURCE 4 GENE: NS3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBEV10; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS HCV, PROTEASE, NS3-4A, V36M MUTANT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.WEI REVDAT 6 03-APR-24 2QV1 1 REMARK REVDAT 5 21-FEB-24 2QV1 1 REMARK REVDAT 4 20-OCT-21 2QV1 1 SEQADV REVDAT 3 09-SEP-20 2QV1 1 KEYWDS REMARK SEQADV LINK REVDAT 2 24-FEB-09 2QV1 1 VERSN REVDAT 1 19-AUG-08 2QV1 0 JRNL AUTH Y.WEI,L.CHAO JRNL TITL PHENOTYPIC AND STRUCTURAL ANALYSES OF HCV NS3 PROTEASE VAL36 JRNL TITL 2 VARIANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2005 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4080894.960 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 26385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1437 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4151 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 207 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.43000 REMARK 3 B22 (A**2) : -5.43000 REMARK 3 B33 (A**2) : 10.87000 REMARK 3 B12 (A**2) : -0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.310 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.660 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.610 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 55.86 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.P REMARK 3 PARAMETER FILE 2 : WATER_REP.PAR REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000044090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.05200 REMARK 200 R SYM FOR SHELL (I) : 0.03900 REMARK 200 FOR SHELL : 16.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNX 2005 REMARK 200 STARTING MODEL: HCV NS3-4A WILD TYPE PROTEASE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M NACL, 0.3M KH2PO4, 0.1M REMARK 280 MES,10.0MM PME, PROTEIN CONCENTRATION 8MG/ML, PH 6.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 114.38000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.03732 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.17667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 114.38000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.03732 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.17667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 114.38000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.03732 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.17667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 114.38000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 66.03732 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.17667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 114.38000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 66.03732 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.17667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 114.38000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 66.03732 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.17667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 132.07465 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.35333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 132.07465 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.35333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 132.07465 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 50.35333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 132.07465 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.35333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 132.07465 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 50.35333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 132.07465 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 50.35333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 ILE A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 465 TYR A 32 REMARK 465 ALA A 33 REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 ARG A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 LEU A 40 REMARK 465 GLY A 41 REMARK 465 CYS A 42 REMARK 465 ILE A 43 REMARK 465 ILE A 44 REMARK 465 THR A 45 REMARK 465 SER A 46 REMARK 465 LEU A 47 REMARK 465 THR A 48 REMARK 465 GLY A 49 REMARK 465 ARG A 50 REMARK 465 ASP A 51 REMARK 465 LYS A 52 REMARK 465 ASN A 53 REMARK 465 GLN A 54 REMARK 465 ARG A 206 REMARK 465 SER A 207 REMARK 465 LYS C 20 REMARK 465 ILE C 37 REMARK 465 ILE C 38 REMARK 465 PRO C 39 REMARK 465 ALA C 40 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLN B1054 CG CD OE1 NE2 REMARK 470 LYS B1162 CG CD CE NZ REMARK 470 LYS B1191 CG CD CE NZ REMARK 470 GLU B1202 CG CD OE1 OE2 REMARK 470 LYS D 34 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 107 O HOH B 121 1.03 REMARK 500 CD ARG B 1118 O HOH B 67 2.10 REMARK 500 CD2 TYR A 82 O HOH A 981 2.11 REMARK 500 O LEU B 1120 O HOH B 163 2.11 REMARK 500 O GLN B 1115 O HOH B 83 2.12 REMARK 500 CG ARG B 1187 O HOH B 193 2.12 REMARK 500 O HOH A 971 O HOH A 974 2.13 REMARK 500 C GLY B 1167 O HOH B 61 2.13 REMARK 500 OD1 ASN B 1103 O HOH B 111 2.13 REMARK 500 N VAL A 109 O HOH A 942 2.15 REMARK 500 CD1 ILE C 29 O HOH A 967 2.15 REMARK 500 O THR B 1030 O HOH B 1 2.17 REMARK 500 NH1 ARG B 1144 O HOH B 39 2.17 REMARK 500 CG2 THR A 68 O HOH A 972 2.17 REMARK 500 N ARG C 28 O HOH C 42 2.17 REMARK 500 OE2 GLU A 199 O HOH A 940 2.18 REMARK 500 CG TYR A 82 O HOH A 981 2.18 REMARK 500 O LYS B 1162 O HOH B 26 2.18 REMARK 500 O SER B 1127 O HOH B 39 2.18 REMARK 500 CE2 TYR B 1160 O HOH B 6 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 125 CB CYS A 125 SG 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 88 152.74 -46.05 REMARK 500 SER A 127 160.05 -45.21 REMARK 500 PRO A 155 155.67 -49.85 REMARK 500 ASP B1107 40.57 71.38 REMARK 500 THR B1186 99.40 173.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 123 SG REMARK 620 2 CYS A 125 SG 103.6 REMARK 620 3 CYS A 171 SG 121.5 115.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1123 SG REMARK 620 2 CYS B1125 SG 129.5 REMARK 620 3 CYS B1171 SG 65.9 118.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 902 DBREF 2QV1 A 27 207 UNP A1Z094 A1Z094_9HEPC 1 181 DBREF 2QV1 B 1027 1207 UNP A1Z094 A1Z094_9HEPC 1 181 DBREF 2QV1 C 20 40 PDB 2QV1 2QV1 20 40 DBREF 2QV1 D 20 40 PDB 2QV1 2QV1 20 40 SEQADV 2QV1 MET A 62 UNP A1Z094 VAL 36 ENGINEERED MUTATION SEQADV 2QV1 GLU A 202 UNP A1Z094 GLY 176 CONFLICT SEQADV 2QV1 MET B 1062 UNP A1Z094 VAL 36 ENGINEERED MUTATION SEQADV 2QV1 GLU B 1202 UNP A1Z094 GLY 176 CONFLICT SEQRES 1 A 181 ALA PRO ILE THR ALA TYR ALA GLN GLN THR ARG GLY LEU SEQRES 2 A 181 LEU GLY CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS SEQRES 3 A 181 ASN GLN VAL GLU GLY GLU VAL GLN ILE MET SER THR ALA SEQRES 4 A 181 THR GLN THR PHE LEU ALA THR CYS ILE ASN GLY VAL CYS SEQRES 5 A 181 TRP THR VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SEQRES 6 A 181 SER PRO LYS GLY PRO VAL ILE GLN MET TYR THR ASN VAL SEQRES 7 A 181 ASP GLN ASP LEU VAL GLY TRP PRO ALA PRO GLN GLY SER SEQRES 8 A 181 ARG SER LEU THR PRO CYS THR CYS GLY SER SER ASP LEU SEQRES 9 A 181 TYR LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG SEQRES 10 A 181 ARG ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG SEQRES 11 A 181 PRO ILE SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU SEQRES 12 A 181 LEU CYS PRO ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA SEQRES 13 A 181 ALA VAL CYS THR ARG GLY VAL ALA LYS ALA VAL ASP PHE SEQRES 14 A 181 ILE PRO VAL GLU ASN LEU GLU THR THR MET ARG SER SEQRES 1 B 181 ALA PRO ILE THR ALA TYR ALA GLN GLN THR ARG GLY LEU SEQRES 2 B 181 LEU GLY CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS SEQRES 3 B 181 ASN GLN VAL GLU GLY GLU VAL GLN ILE MET SER THR ALA SEQRES 4 B 181 THR GLN THR PHE LEU ALA THR CYS ILE ASN GLY VAL CYS SEQRES 5 B 181 TRP THR VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SEQRES 6 B 181 SER PRO LYS GLY PRO VAL ILE GLN MET TYR THR ASN VAL SEQRES 7 B 181 ASP GLN ASP LEU VAL GLY TRP PRO ALA PRO GLN GLY SER SEQRES 8 B 181 ARG SER LEU THR PRO CYS THR CYS GLY SER SER ASP LEU SEQRES 9 B 181 TYR LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG SEQRES 10 B 181 ARG ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG SEQRES 11 B 181 PRO ILE SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU SEQRES 12 B 181 LEU CYS PRO ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA SEQRES 13 B 181 ALA VAL CYS THR ARG GLY VAL ALA LYS ALA VAL ASP PHE SEQRES 14 B 181 ILE PRO VAL GLU ASN LEU GLU THR THR MET ARG SER SEQRES 1 C 21 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE VAL LEU SER SEQRES 2 C 21 GLY LYS PRO ALA ILE ILE PRO ALA SEQRES 1 D 21 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE VAL LEU SER SEQRES 2 D 21 GLY LYS PRO ALA ILE ILE PRO ALA HET ZN A 901 1 HET ZN B 902 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *223(H2 O) HELIX 1 1 TYR A 82 GLY A 86 1 5 HELIX 2 2 VAL A 104 GLN A 106 5 3 HELIX 3 3 SER A 159 LYS A 162 5 4 HELIX 4 4 VAL A 198 MET A 205 1 8 HELIX 5 5 GLY B 1038 GLY B 1049 1 12 HELIX 6 6 TYR B 1082 GLY B 1086 1 5 HELIX 7 7 SER B 1159 LYS B 1162 5 4 HELIX 8 8 VAL B 1198 SER B 1207 1 10 SHEET 1 A 7 THR A 89 ILE A 90 0 SHEET 2 A 7 SER C 22 VAL C 30 1 O VAL C 23 N THR A 89 SHEET 3 A 7 VAL A 59 SER A 63 -1 N VAL A 59 O ILE C 29 SHEET 4 A 7 THR A 68 ILE A 74 -1 O PHE A 69 N MET A 62 SHEET 5 A 7 VAL A 77 VAL A 81 -1 O VAL A 77 N ILE A 74 SHEET 6 A 7 LEU A 108 PRO A 112 -1 O TRP A 111 N CYS A 78 SHEET 7 A 7 TYR A 101 ASN A 103 -1 N ASN A 103 O LEU A 108 SHEET 1 B 3 THR A 89 ILE A 90 0 SHEET 2 B 3 SER C 22 VAL C 30 1 O VAL C 23 N THR A 89 SHEET 3 B 3 ALA D 36 ILE D 37 -1 O ALA D 36 N VAL C 30 SHEET 1 C 7 ASP A 129 VAL A 133 0 SHEET 2 C 7 VAL A 139 GLY A 146 -1 O ILE A 140 N LEU A 132 SHEET 3 C 7 ARG A 149 PRO A 157 -1 O SER A 151 N ARG A 143 SHEET 4 C 7 VAL A 189 PRO A 197 -1 O ALA A 190 N ARG A 156 SHEET 5 C 7 ALA A 176 THR A 186 -1 N ALA A 182 O ASP A 194 SHEET 6 C 7 PRO A 168 LEU A 170 -1 N LEU A 169 O GLY A 178 SHEET 7 C 7 ASP A 129 VAL A 133 -1 N TYR A 131 O LEU A 170 SHEET 1 D 7 TYR B1032 GLN B1035 0 SHEET 2 D 7 VAL D 24 VAL D 30 -1 O VAL D 30 N TYR B1032 SHEET 3 D 7 VAL B1059 SER B1063 -1 N ILE B1061 O VAL D 26 SHEET 4 D 7 THR B1068 ILE B1074 -1 O PHE B1069 N MET B1062 SHEET 5 D 7 VAL B1077 VAL B1081 -1 O TRP B1079 N THR B1072 SHEET 6 D 7 LEU B1108 PRO B1112 -1 O TRP B1111 N CYS B1078 SHEET 7 D 7 TYR B1101 ASN B1103 -1 N ASN B1103 O LEU B1108 SHEET 1 E 7 ASP B1129 VAL B1133 0 SHEET 2 E 7 VAL B1139 ARG B1144 -1 O VAL B1142 N LEU B1130 SHEET 3 E 7 ARG B1149 PRO B1157 -1 O SER B1151 N ARG B1143 SHEET 4 E 7 VAL B1189 PRO B1197 -1 O VAL B1193 N GLY B1150 SHEET 5 E 7 ALA B1176 VAL B1184 -1 N ALA B1182 O ASP B1194 SHEET 6 E 7 PRO B1168 LEU B1170 -1 N LEU B1169 O VAL B1177 SHEET 7 E 7 ASP B1129 VAL B1133 -1 N TYR B1131 O LEU B1170 LINK SG CYS A 123 ZN ZN A 901 1555 1555 2.37 LINK SG CYS A 125 ZN ZN A 901 1555 1555 2.29 LINK SG CYS A 171 ZN ZN A 901 1555 1555 2.30 LINK ZN ZN B 902 SG CYS B1123 1555 1555 2.85 LINK ZN ZN B 902 SG CYS B1125 1555 1555 2.58 LINK ZN ZN B 902 SG CYS B1171 1555 1555 2.92 SITE 1 AC1 3 CYS A 123 CYS A 125 CYS A 171 SITE 1 AC2 4 CYS B1123 THR B1124 CYS B1125 CYS B1171 CRYST1 228.760 228.760 75.530 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004371 0.002524 0.000000 0.00000 SCALE2 0.000000 0.005048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013240 0.00000