HEADER TRANSFERASE 07-AUG-07 2QV7 TITLE CRYSTAL STRUCTURE OF DIACYLGLYCEROL KINASE DGKB IN COMPLEX WITH ADP TITLE 2 AND MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIACYLGLYCEROL KINASE DGKB; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.107; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 GENE: SAR1989; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: METHIONINE AUXOTROPH B834; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PAJ015 KEYWDS ALPHA-BETA DOMAIN 1, BETA SANDWICH DOMAIN 2, PROTEIN-ADP COMPLEX, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MILLER,A.JERGA,C.O.ROCK,S.W.WHITE REVDAT 4 13-JUL-11 2QV7 1 VERSN REVDAT 3 24-FEB-09 2QV7 1 VERSN REVDAT 2 05-AUG-08 2QV7 1 JRNL REVDAT 1 17-JUN-08 2QV7 0 JRNL AUTH D.J.MILLER,A.JERGA,C.O.ROCK,S.W.WHITE JRNL TITL ANALYSIS OF THE STAPHYLOCOCCUS AUREUS DGKB STRUCTURE REVEALS JRNL TITL 2 A COMMON CATALYTIC MECHANISM FOR THE SOLUBLE DIACYLGLYCEROL JRNL TITL 3 KINASES. JRNL REF STRUCTURE V. 16 1036 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18611377 JRNL DOI 10.1016/J.STR.2008.03.019 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1130 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.312 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.497 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2393 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3240 ; 1.122 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 5.887 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;39.929 ;25.093 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;14.053 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.523 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1801 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1050 ; 0.177 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1583 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 183 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1542 ; 0.430 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2388 ; 0.676 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 953 ; 1.093 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 852 ; 1.603 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 57.3594 39.6975 21.3913 REMARK 3 T TENSOR REMARK 3 T11: -0.0960 T22: -0.0549 REMARK 3 T33: -0.1044 T12: -0.0286 REMARK 3 T13: -0.0305 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.0622 L22: 2.8803 REMARK 3 L33: 1.3444 L12: -1.7480 REMARK 3 L13: -0.2376 L23: 0.1033 REMARK 3 S TENSOR REMARK 3 S11: 0.1358 S12: -0.0014 S13: -0.0199 REMARK 3 S21: -0.0425 S22: -0.0911 S23: -0.0721 REMARK 3 S31: -0.0260 S32: 0.0218 S33: -0.0447 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 81.3782 25.7499 32.2201 REMARK 3 T TENSOR REMARK 3 T11: -0.1061 T22: 0.2071 REMARK 3 T33: -0.0736 T12: 0.0341 REMARK 3 T13: -0.0068 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 15.6810 L22: 3.9168 REMARK 3 L33: 9.4463 L12: -4.5680 REMARK 3 L13: 7.4619 L23: -2.0515 REMARK 3 S TENSOR REMARK 3 S11: -0.2467 S12: -0.6825 S13: 0.0752 REMARK 3 S21: 0.3456 S22: 0.1075 S23: -0.0115 REMARK 3 S31: -0.2163 S32: 1.0035 S33: 0.1392 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 200 REMARK 3 RESIDUE RANGE : A 207 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 80.6206 19.0486 24.3563 REMARK 3 T TENSOR REMARK 3 T11: -0.0420 T22: -0.0841 REMARK 3 T33: -0.0819 T12: 0.0383 REMARK 3 T13: -0.0131 T23: 0.0724 REMARK 3 L TENSOR REMARK 3 L11: 6.9970 L22: 1.0319 REMARK 3 L33: 0.3777 L12: -0.8824 REMARK 3 L13: 0.6812 L23: 0.1919 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: -0.3633 S13: -0.4159 REMARK 3 S21: -0.0507 S22: -0.0118 S23: 0.0378 REMARK 3 S31: 0.2378 S32: 0.0558 S33: 0.0787 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 91.7559 22.5470 17.5372 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: -0.0552 REMARK 3 T33: -0.1495 T12: 0.0769 REMARK 3 T13: 0.0515 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 7.3962 L22: 8.6303 REMARK 3 L33: 6.0806 L12: 0.3019 REMARK 3 L13: 1.1521 L23: -2.0601 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: 0.3618 S13: -0.1648 REMARK 3 S21: -0.2852 S22: 0.0725 S23: 0.2903 REMARK 3 S31: -0.1564 S32: -0.0423 S33: -0.1217 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 73.7884 19.2829 29.7515 REMARK 3 T TENSOR REMARK 3 T11: -0.1043 T22: -0.0193 REMARK 3 T33: -0.1161 T12: 0.0492 REMARK 3 T13: -0.0183 T23: 0.1247 REMARK 3 L TENSOR REMARK 3 L11: 7.9025 L22: 4.0166 REMARK 3 L33: 2.1110 L12: -1.4924 REMARK 3 L13: 0.3437 L23: 0.4875 REMARK 3 S TENSOR REMARK 3 S11: -0.1975 S12: -1.1044 S13: -0.5486 REMARK 3 S21: 0.3938 S22: 0.1936 S23: 0.0906 REMARK 3 S31: 0.1500 S32: 0.0248 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 296 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 64.0648 29.3605 3.5840 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.1301 REMARK 3 T33: -0.2182 T12: 0.1568 REMARK 3 T13: -0.0567 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 10.3742 L22: 17.2624 REMARK 3 L33: 8.7137 L12: -4.1852 REMARK 3 L13: 4.0752 L23: -5.9460 REMARK 3 S TENSOR REMARK 3 S11: 0.5359 S12: 1.9443 S13: -0.0013 REMARK 3 S21: -1.1273 S22: -0.4027 S23: -0.0158 REMARK 3 S31: 0.0786 S32: 0.5026 S33: -0.1331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI-220 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16997 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT OF REMARK 200 DGKB REMARK 200 SOFTWARE USED: DGKB MODEL USED FOR RIGID BODY REFINEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 0.1 M TRIS PH 8.5, 9% PEG2K MME; REMARK 280 WELL: 0.1 M TRIS PH 8.5, 18% PEG2K MME, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.88000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.84000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.88000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.84000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.84000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.84000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.68000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 VAL A 145 REMARK 465 SER A 146 REMARK 465 TYR A 147 REMARK 465 GLU A 148 REMARK 465 THR A 149 REMARK 465 PRO A 150 REMARK 465 SER A 151 REMARK 465 LYS A 152 REMARK 465 LEU A 153 REMARK 465 LYS A 154 REMARK 465 SER A 155 REMARK 465 ILE A 156 REMARK 465 VAL A 157 REMARK 465 ILE A 313 REMARK 465 GLU A 314 REMARK 465 GLU A 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -2 OG REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 MSE A 0 CG SE CE REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 TYR A 162 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 GLN A 267 CG CD OE1 NE2 REMARK 470 ASP A 309 CG OD1 OD2 REMARK 470 ASP A 310 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 129 -105.56 51.09 REMARK 500 LYS A 165 78.99 -102.04 REMARK 500 LEU A 193 144.32 -170.82 REMARK 500 LEU A 198 -65.07 -106.12 REMARK 500 MSE A 202 -155.23 -141.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 213 O REMARK 620 2 ASP A 216 OD2 84.6 REMARK 620 3 TYR A 218 O 171.4 89.4 REMARK 620 4 HOH A 582 O 87.3 83.8 98.1 REMARK 620 5 HOH A 531 O 90.9 166.0 96.4 82.8 REMARK 620 6 HOH A 511 O 84.4 98.7 90.5 171.0 94.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QVL RELATED DB: PDB REMARK 900 'APO FORM' DBREF 2QV7 A 1 315 UNP Q6GFF9 Q6GFF9_STAAR 1 315 SEQADV 2QV7 MSE A -21 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 GLY A -20 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 SER A -19 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 SER A -18 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 HIS A -17 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 HIS A -16 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 HIS A -15 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 HIS A -14 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 HIS A -13 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 HIS A -12 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 HIS A -11 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 SER A -10 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 SER A -9 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 GLY A -8 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 LEU A -7 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 VAL A -6 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 PRO A -5 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 ARG A -4 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 GLY A -3 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 SER A -2 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 HIS A -1 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QV7 MSE A 0 UNP Q6GFF9 EXPRESSION TAG SEQRES 1 A 337 MSE GLY SER SER HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 337 GLY LEU VAL PRO ARG GLY SER HIS MSE MSE ARG LYS ARG SEQRES 3 A 337 ALA ARG ILE ILE TYR ASN PRO THR SER GLY LYS GLU GLN SEQRES 4 A 337 PHE LYS ARG GLU LEU PRO ASP ALA LEU ILE LYS LEU GLU SEQRES 5 A 337 LYS ALA GLY TYR GLU THR SER ALA TYR ALA THR GLU LYS SEQRES 6 A 337 ILE GLY ASP ALA THR LEU GLU ALA GLU ARG ALA MSE HIS SEQRES 7 A 337 GLU ASN TYR ASP VAL LEU ILE ALA ALA GLY GLY ASP GLY SEQRES 8 A 337 THR LEU ASN GLU VAL VAL ASN GLY ILE ALA GLU LYS PRO SEQRES 9 A 337 ASN ARG PRO LYS LEU GLY VAL ILE PRO MSE GLY THR VAL SEQRES 10 A 337 ASN ASP PHE GLY ARG ALA LEU HIS ILE PRO ASN ASP ILE SEQRES 11 A 337 MSE GLY ALA LEU ASP VAL ILE ILE GLU GLY HIS SER THR SEQRES 12 A 337 LYS VAL ASP ILE GLY LYS MSE ASN ASN ARG TYR PHE ILE SEQRES 13 A 337 ASN LEU ALA ALA GLY GLY GLN LEU THR GLN VAL SER TYR SEQRES 14 A 337 GLU THR PRO SER LYS LEU LYS SER ILE VAL GLY PRO PHE SEQRES 15 A 337 ALA TYR TYR ILE LYS GLY PHE GLU MSE LEU PRO GLN MSE SEQRES 16 A 337 LYS ALA VAL ASP LEU ARG ILE GLU TYR ASP GLY ASN VAL SEQRES 17 A 337 PHE GLN GLY GLU ALA LEU LEU PHE PHE LEU GLY LEU THR SEQRES 18 A 337 ASN SER MSE ALA GLY PHE GLU LYS LEU VAL PRO ASP ALA SEQRES 19 A 337 LYS LEU ASP ASP GLY TYR PHE THR LEU ILE ILE VAL GLU SEQRES 20 A 337 LYS SER ASN LEU ALA GLU LEU GLY HIS ILE MSE THR LEU SEQRES 21 A 337 ALA SER ARG GLY GLU HIS THR LYS HIS PRO LYS VAL ILE SEQRES 22 A 337 TYR GLU LYS ALA LYS ALA ILE ASN ILE SER SER PHE THR SEQRES 23 A 337 ASP LEU GLN LEU ASN VAL ASP GLY GLU TYR GLY GLY LYS SEQRES 24 A 337 LEU PRO ALA ASN PHE LEU ASN LEU GLU ARG HIS ILE ASP SEQRES 25 A 337 VAL PHE ALA PRO ASN ASP ILE VAL ASN GLU GLU LEU ILE SEQRES 26 A 337 ASN ASN ASP HIS VAL ASP ASP ASN LEU ILE GLU GLU MODRES 2QV7 MSE A 0 MET SELENOMETHIONINE MODRES 2QV7 MSE A 1 MET SELENOMETHIONINE MODRES 2QV7 MSE A 55 MET SELENOMETHIONINE MODRES 2QV7 MSE A 92 MET SELENOMETHIONINE MODRES 2QV7 MSE A 109 MET SELENOMETHIONINE MODRES 2QV7 MSE A 128 MET SELENOMETHIONINE MODRES 2QV7 MSE A 169 MET SELENOMETHIONINE MODRES 2QV7 MSE A 173 MET SELENOMETHIONINE MODRES 2QV7 MSE A 202 MET SELENOMETHIONINE MODRES 2QV7 MSE A 236 MET SELENOMETHIONINE HET MSE A 0 5 HET MSE A 1 8 HET MSE A 55 8 HET MSE A 92 8 HET MSE A 109 8 HET MSE A 128 8 HET MSE A 169 8 HET MSE A 173 8 HET MSE A 202 8 HET MSE A 236 8 HET MG A 501 1 HET ADP A 500 27 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *152(H2 O) HELIX 1 1 GLN A 17 ALA A 32 1 16 HELIX 2 2 GLY A 45 MSE A 55 1 11 HELIX 3 3 GLY A 67 ALA A 79 1 13 HELIX 4 4 ASN A 96 LEU A 102 1 7 HELIX 5 5 ASP A 107 GLY A 118 1 12 HELIX 6 6 GLY A 158 TYR A 162 5 5 HELIX 7 7 MSE A 169 MSE A 173 5 5 HELIX 8 8 ASN A 228 SER A 240 1 13 HELIX 9 9 ARG A 241 GLY A 242 5 2 HELIX 10 10 GLU A 243 HIS A 247 5 5 SHEET 1 A 4 TYR A 34 ALA A 40 0 SHEET 2 A 4 LYS A 3 TYR A 9 1 N LYS A 3 O GLU A 35 SHEET 3 A 4 VAL A 61 GLY A 66 1 O ILE A 63 N ILE A 8 SHEET 4 A 4 LYS A 86 PRO A 91 1 O GLY A 88 N ALA A 64 SHEET 1 B 8 ARG A 131 PHE A 133 0 SHEET 2 B 8 SER A 120 MSE A 128 -1 N MSE A 128 O ARG A 131 SHEET 3 B 8 ALA A 280 PHE A 292 -1 O VAL A 291 N THR A 121 SHEET 4 B 8 ALA A 257 SER A 261 -1 N ILE A 258 O PHE A 282 SHEET 5 B 8 VAL A 176 TYR A 182 -1 N GLU A 181 O ASN A 259 SHEET 6 B 8 ASN A 185 GLY A 197 -1 O PHE A 187 N ILE A 180 SHEET 7 B 8 PHE A 219 GLU A 225 -1 O THR A 220 N GLY A 197 SHEET 8 B 8 VAL A 250 ALA A 255 -1 O ILE A 251 N ILE A 223 SHEET 1 C 9 ARG A 131 PHE A 133 0 SHEET 2 C 9 SER A 120 MSE A 128 -1 N MSE A 128 O ARG A 131 SHEET 3 C 9 ALA A 280 PHE A 292 -1 O VAL A 291 N THR A 121 SHEET 4 C 9 ALA A 257 SER A 261 -1 N ILE A 258 O PHE A 282 SHEET 5 C 9 VAL A 176 TYR A 182 -1 N GLU A 181 O ASN A 259 SHEET 6 C 9 ASN A 185 GLY A 197 -1 O PHE A 187 N ILE A 180 SHEET 7 C 9 LEU A 136 GLY A 140 -1 N ALA A 137 O LEU A 196 SHEET 8 C 9 GLN A 267 VAL A 270 -1 O ASN A 269 N ALA A 138 SHEET 9 C 9 GLU A 273 LYS A 277 -1 O GLU A 273 N VAL A 270 LINK O LYS A 213 MG MG A 501 1555 1555 2.19 LINK OD2 ASP A 216 MG MG A 501 1555 1555 2.34 LINK O TYR A 218 MG MG A 501 1555 1555 2.24 LINK MG MG A 501 O HOH A 582 1555 1555 2.19 LINK MG MG A 501 O HOH A 531 1555 1555 2.38 LINK MG MG A 501 O HOH A 511 1555 1555 2.26 LINK C HIS A -1 N MSE A 0 1555 1555 1.33 LINK C MSE A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C ALA A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N HIS A 56 1555 1555 1.33 LINK C PRO A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N GLY A 93 1555 1555 1.33 LINK C ILE A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N GLY A 110 1555 1555 1.33 LINK C LYS A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N ASN A 129 1555 1555 1.33 LINK C GLU A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N LEU A 170 1555 1555 1.33 LINK C GLN A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N LYS A 174 1555 1555 1.33 LINK C SER A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N ALA A 203 1555 1555 1.33 LINK C ILE A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N THR A 237 1555 1555 1.33 CISPEP 1 LEU A 278 PRO A 279 0 2.84 SITE 1 AC1 6 LYS A 213 ASP A 216 TYR A 218 HOH A 511 SITE 2 AC1 6 HOH A 531 HOH A 582 SITE 1 AC2 17 ASN A 10 THR A 12 SER A 13 GLY A 14 SITE 2 AC2 17 THR A 41 GLU A 42 LYS A 43 ILE A 44 SITE 3 AC2 17 GLY A 66 GLY A 67 GLY A 69 THR A 70 SITE 4 AC2 17 GLU A 73 GLY A 93 THR A 94 HOH A 527 SITE 5 AC2 17 HOH A 625 CRYST1 123.760 123.760 47.680 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020973 0.00000