HEADER PROTEIN TRANSPORT 14-AUG-07 2QY9 TITLE STRUCTURE OF THE NG+1 CONSTRUCT OF THE E. COLI SRP RECEPTOR FTSY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN FTSY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NG DOMAIN RESIDUES 196-497; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FTSY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7LAC KEYWDS SRP RECEPTOR, FTSY, PROTEIN TARGETING, SIMIBI CLASS GTPASE, CELL KEYWDS 2 CYCLE, CELL DIVISION, GTP-BINDING, INNER MEMBRANE, MEMBRANE, KEYWDS 3 NUCLEOTIDE-BINDING, RIBONUCLEOPROTEIN, RNA-BINDING, SIGNAL KEYWDS 4 RECOGNITION PARTICLE, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.PARLITZ,G.BANGE,K.WILD,I.SINNING REVDAT 3 30-AUG-23 2QY9 1 SEQADV REVDAT 2 24-FEB-09 2QY9 1 VERSN REVDAT 1 02-OCT-07 2QY9 0 JRNL AUTH R.PARLITZ,G.BANGE,K.WILD,I.SINNING JRNL TITL THE E. COLI SRP-RECEPTOR FTSY CONTAINS AN ESSENTIAL AND JRNL TITL 2 AUTONOMOUS MEMBRANE-BINDING AMPHIPATHIC HELIX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : TROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1149 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 186 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : 1.85000 REMARK 3 B33 (A**2) : -1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.910 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FTS.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % W/V PEG 3000, 100 MM CITRATE PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.03750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 195 REMARK 465 GLU A 496 REMARK 465 ASP A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 483 O HOH A 616 2.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 2QY9 A 196 497 UNP P10121 FTSY_ECOLI 196 497 SEQADV 2QY9 MET A 195 UNP P10121 INITIATING METHIONINE SEQADV 2QY9 HIS A 498 UNP P10121 EXPRESSION TAG SEQADV 2QY9 HIS A 499 UNP P10121 EXPRESSION TAG SEQADV 2QY9 HIS A 500 UNP P10121 EXPRESSION TAG SEQADV 2QY9 HIS A 501 UNP P10121 EXPRESSION TAG SEQADV 2QY9 HIS A 502 UNP P10121 EXPRESSION TAG SEQADV 2QY9 HIS A 503 UNP P10121 EXPRESSION TAG SEQRES 1 A 309 MET PHE ALA ARG LEU LYS ARG SER LEU LEU LYS THR LYS SEQRES 2 A 309 GLU ASN LEU GLY SER GLY PHE ILE SER LEU PHE ARG GLY SEQRES 3 A 309 LYS LYS ILE ASP ASP ASP LEU PHE GLU GLU LEU GLU GLU SEQRES 4 A 309 GLN LEU LEU ILE ALA ASP VAL GLY VAL GLU THR THR ARG SEQRES 5 A 309 LYS ILE ILE THR ASN LEU THR GLU GLY ALA SER ARG LYS SEQRES 6 A 309 GLN LEU ARG ASP ALA GLU ALA LEU TYR GLY LEU LEU LYS SEQRES 7 A 309 GLU GLU MET GLY GLU ILE LEU ALA LYS VAL ASP GLU PRO SEQRES 8 A 309 LEU ASN VAL GLU GLY LYS ALA PRO PHE VAL ILE LEU MET SEQRES 9 A 309 VAL GLY VAL ASN GLY VAL GLY LYS THR THR THR ILE GLY SEQRES 10 A 309 LYS LEU ALA ARG GLN PHE GLU GLN GLN GLY LYS SER VAL SEQRES 11 A 309 MET LEU ALA ALA GLY ASP THR PHE ARG ALA ALA ALA VAL SEQRES 12 A 309 GLU GLN LEU GLN VAL TRP GLY GLN ARG ASN ASN ILE PRO SEQRES 13 A 309 VAL ILE ALA GLN HIS THR GLY ALA ASP SER ALA SER VAL SEQRES 14 A 309 ILE PHE ASP ALA ILE GLN ALA ALA LYS ALA ARG ASN ILE SEQRES 15 A 309 ASP VAL LEU ILE ALA ASP THR ALA GLY ARG LEU GLN ASN SEQRES 16 A 309 LYS SER HIS LEU MET GLU GLU LEU LYS LYS ILE VAL ARG SEQRES 17 A 309 VAL MET LYS LYS LEU ASP VAL GLU ALA PRO HIS GLU VAL SEQRES 18 A 309 MET LEU THR ILE ASP ALA SER THR GLY GLN ASN ALA VAL SEQRES 19 A 309 SER GLN ALA LYS LEU PHE HIS GLU ALA VAL GLY LEU THR SEQRES 20 A 309 GLY ILE THR LEU THR LYS LEU ASP GLY THR ALA LYS GLY SEQRES 21 A 309 GLY VAL ILE PHE SER VAL ALA ASP GLN PHE GLY ILE PRO SEQRES 22 A 309 ILE ARG TYR ILE GLY VAL GLY GLU ARG ILE GLU ASP LEU SEQRES 23 A 309 ARG PRO PHE LYS ALA ASP ASP PHE ILE GLU ALA LEU PHE SEQRES 24 A 309 ALA ARG GLU ASP HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *231(H2 O) HELIX 1 1 PHE A 196 LEU A 203 1 8 HELIX 2 2 SER A 212 ARG A 219 1 8 HELIX 3 3 ASP A 224 ALA A 238 1 15 HELIX 4 4 GLY A 241 LYS A 259 1 19 HELIX 5 5 ASP A 263 GLU A 265 5 3 HELIX 6 6 ALA A 266 LYS A 281 1 16 HELIX 7 7 GLY A 305 GLN A 319 1 15 HELIX 8 8 ARG A 333 ASN A 347 1 15 HELIX 9 9 ASP A 359 ARG A 374 1 16 HELIX 10 10 ARG A 386 GLN A 388 5 3 HELIX 11 11 ASN A 389 LYS A 405 1 17 HELIX 12 12 GLY A 424 VAL A 438 1 15 HELIX 13 13 GLY A 455 GLY A 465 1 11 HELIX 14 14 ARG A 476 GLU A 478 5 3 HELIX 15 15 LYS A 484 ALA A 494 1 11 SHEET 1 A 8 VAL A 351 ILE A 352 0 SHEET 2 A 8 VAL A 324 ALA A 327 1 N LEU A 326 O ILE A 352 SHEET 3 A 8 VAL A 378 ALA A 381 1 O ILE A 380 N MET A 325 SHEET 4 A 8 PHE A 294 VAL A 299 1 N ILE A 296 O LEU A 379 SHEET 5 A 8 GLU A 414 ASP A 420 1 O MET A 416 N VAL A 299 SHEET 6 A 8 GLY A 442 THR A 446 1 O THR A 446 N ILE A 419 SHEET 7 A 8 ILE A 468 GLY A 472 1 O GLY A 472 N LEU A 445 SHEET 8 A 8 LEU A 480 PRO A 482 -1 O ARG A 481 N ILE A 471 CISPEP 1 ALA A 292 PRO A 293 0 -0.08 CISPEP 2 ALA A 411 PRO A 412 0 -0.05 CRYST1 32.225 78.075 59.054 90.00 94.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031032 0.000000 0.002633 0.00000 SCALE2 0.000000 0.012808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016995 0.00000