data_2QYC # _entry.id 2QYC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QYC pdb_00002qyc 10.2210/pdb2qyc/pdb RCSB RCSB044198 ? ? WWPDB D_1000044198 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 378277 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2QYC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-08-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of dimeric ferredoxin-like protein (NP_888056.1) from Bordetella bronchiseptica at 1.90 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2QYC _cell.length_a 50.820 _cell.length_b 50.820 _cell.length_c 142.170 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QYC _symmetry.Int_Tables_number 154 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ferredoxin-like protein' 11722.313 2 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 5 water nat water 18.015 120 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)T(MSE)FLHVV(MSE)(MSE)EFDDGIDAGFFRTVDEYVAR(MSE)KRECDGLLLYHFGENVAARSQGYTHATS SAFVDAAAHDAYQVCPAHVA(MSE)KAF(MSE)GPRIKRVVVYDGEVPAIG ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTMFLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDAYQVCPAHVA MKAFMGPRIKRVVVYDGEVPAIG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 378277 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 MSE n 1 5 PHE n 1 6 LEU n 1 7 HIS n 1 8 VAL n 1 9 VAL n 1 10 MSE n 1 11 MSE n 1 12 GLU n 1 13 PHE n 1 14 ASP n 1 15 ASP n 1 16 GLY n 1 17 ILE n 1 18 ASP n 1 19 ALA n 1 20 GLY n 1 21 PHE n 1 22 PHE n 1 23 ARG n 1 24 THR n 1 25 VAL n 1 26 ASP n 1 27 GLU n 1 28 TYR n 1 29 VAL n 1 30 ALA n 1 31 ARG n 1 32 MSE n 1 33 LYS n 1 34 ARG n 1 35 GLU n 1 36 CYS n 1 37 ASP n 1 38 GLY n 1 39 LEU n 1 40 LEU n 1 41 LEU n 1 42 TYR n 1 43 HIS n 1 44 PHE n 1 45 GLY n 1 46 GLU n 1 47 ASN n 1 48 VAL n 1 49 ALA n 1 50 ALA n 1 51 ARG n 1 52 SER n 1 53 GLN n 1 54 GLY n 1 55 TYR n 1 56 THR n 1 57 HIS n 1 58 ALA n 1 59 THR n 1 60 SER n 1 61 SER n 1 62 ALA n 1 63 PHE n 1 64 VAL n 1 65 ASP n 1 66 ALA n 1 67 ALA n 1 68 ALA n 1 69 HIS n 1 70 ASP n 1 71 ALA n 1 72 TYR n 1 73 GLN n 1 74 VAL n 1 75 CYS n 1 76 PRO n 1 77 ALA n 1 78 HIS n 1 79 VAL n 1 80 ALA n 1 81 MSE n 1 82 LYS n 1 83 ALA n 1 84 PHE n 1 85 MSE n 1 86 GLY n 1 87 PRO n 1 88 ARG n 1 89 ILE n 1 90 LYS n 1 91 ARG n 1 92 VAL n 1 93 VAL n 1 94 VAL n 1 95 TYR n 1 96 ASP n 1 97 GLY n 1 98 GLU n 1 99 VAL n 1 100 PRO n 1 101 ALA n 1 102 ILE n 1 103 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bordetella _entity_src_gen.pdbx_gene_src_gene 'NP_888056.1, BB1511' _entity_src_gen.gene_src_species 'Bordetella bronchiseptica' _entity_src_gen.gene_src_strain 'RB50, NCTC 13252' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bordetella bronchiseptica RB50' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 257310 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-588 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7WM81_BORBR _struct_ref.pdbx_db_accession Q7WM81 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTMFLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDAYQVCPAHVAM KAFMGPRIKRVVVYDGEVPAIG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QYC A 2 ? 103 ? Q7WM81 1 ? 102 ? 1 102 2 1 2QYC B 2 ? 103 ? Q7WM81 1 ? 102 ? 1 102 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QYC GLY A 1 ? UNP Q7WM81 ? ? 'expression tag' 0 1 2 2QYC GLY B 1 ? UNP Q7WM81 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2QYC # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 0.2M Li2SO4, 2.5M NaCl, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2007-07-26 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97926 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97926' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2QYC _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 28.433 _reflns.number_obs 17516 _reflns.pdbx_Rmerge_I_obs 0.08700 _reflns.pdbx_netI_over_sigmaI 9.74000 _reflns.percent_possible_obs 99.7 _reflns.B_iso_Wilson_estimate 23.22 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 7.04 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.97 12439 ? ? 0.618 2.52 ? ? ? ? ? 99.7 1 1 1.97 2.05 12479 ? ? 0.458 3.3 ? ? ? ? ? 99.7 2 1 2.05 2.14 11873 ? ? 0.379 3.9 ? ? ? ? ? 99.7 3 1 2.14 2.25 12005 ? ? 0.277 5.2 ? ? ? ? ? 99.9 4 1 2.25 2.39 12433 ? ? 0.224 6.2 ? ? ? ? ? 99.9 5 1 2.39 2.58 12865 ? ? 0.176 7.5 ? ? ? ? ? 99.6 6 1 2.58 2.84 12400 ? ? 0.131 9.5 ? ? ? ? ? 99.7 7 1 2.84 3.25 12310 ? ? 0.079 14.2 ? ? ? ? ? 99.9 8 1 3.25 4.08 12251 ? ? 0.047 20.7 ? ? ? ? ? 99.9 9 1 4.08 28.43 12189 ? ? 0.036 24.3 ? ? ? ? ? 98.9 10 1 # _refine.entry_id 2QYC _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 28.433 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.760 _refine.ls_number_reflns_obs 17466 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 4. CL, ACETATE, AND ETHYLENE GLYCOL ARE MODELED BASED ON CRYSTALLIZATION AND CRYO CONDITIONS. ; _refine.ls_R_factor_all 0.180 _refine.ls_R_factor_R_work 0.177 _refine.ls_R_factor_R_free 0.236 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 881 _refine.B_iso_mean 21.440 _refine.aniso_B[1][1] 1.210 _refine.aniso_B[2][2] 1.210 _refine.aniso_B[3][3] -1.810 _refine.aniso_B[1][2] 0.600 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.pdbx_overall_ESU_R 0.145 _refine.pdbx_overall_ESU_R_Free 0.148 _refine.overall_SU_ML 0.101 _refine.overall_SU_B 6.788 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.180 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1563 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 1696 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 28.433 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1656 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1101 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2242 1.678 1.928 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2647 0.950 3.003 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 214 6.169 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 78 21.700 22.308 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 254 13.841 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 18.065 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 239 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1900 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 385 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 325 0.216 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1131 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 785 0.198 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 897 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 81 0.178 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 16 0.197 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 52 0.239 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 11 0.143 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1068 2.772 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 424 0.705 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1644 3.494 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 671 6.312 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 593 7.891 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.450 _refine_ls_shell.number_reflns_R_work 1185 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.204 _refine_ls_shell.R_factor_R_free 0.255 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1255 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QYC _struct.title 'Crystal structure of a dimeric ferredoxin-like protein (bb1511) from bordetella bronchiseptica rb50 at 1.90 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Stress responsive a/b barrel domain, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 2QYC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL STRUCTURE PACKING SUGGESTS THAT THE BIOLOGICALLY RELEVANT FORM IS A DIMER. SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 18 ? CYS A 36 ? ASP A 17 CYS A 35 1 ? 19 HELX_P HELX_P2 2 ASP A 65 ? GLN A 73 ? ASP A 64 GLN A 72 1 ? 9 HELX_P HELX_P3 3 CYS A 75 ? GLY A 86 ? CYS A 74 GLY A 85 1 ? 12 HELX_P HELX_P4 4 GLY B 20 ? CYS B 36 ? GLY B 19 CYS B 35 1 ? 17 HELX_P HELX_P5 5 ASP B 65 ? VAL B 74 ? ASP B 64 VAL B 73 1 ? 10 HELX_P HELX_P6 6 CYS B 75 ? GLY B 86 ? CYS B 74 GLY B 85 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 75 SG ? ? A CYS 35 A CYS 74 1_555 ? ? ? ? ? ? ? 2.094 ? ? disulf2 disulf ? ? B CYS 36 SG ? ? ? 1_555 B CYS 75 SG ? ? B CYS 35 B CYS 74 1_555 ? ? ? ? ? ? ? 2.048 ? ? covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A THR 3 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A THR 3 C ? ? ? 1_555 A MSE 4 N ? ? A THR 2 A MSE 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A MSE 4 C ? ? ? 1_555 A PHE 5 N ? ? A MSE 3 A PHE 4 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale5 covale both ? A VAL 9 C ? ? ? 1_555 A MSE 10 N ? ? A VAL 8 A MSE 9 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale6 covale both ? A MSE 10 C ? ? ? 1_555 A MSE 11 N ? ? A MSE 9 A MSE 10 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A MSE 11 C ? ? ? 1_555 A GLU 12 N ? ? A MSE 10 A GLU 11 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A ARG 31 C ? ? ? 1_555 A MSE 32 N ? ? A ARG 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale9 covale both ? A MSE 32 C ? ? ? 1_555 A LYS 33 N ? ? A MSE 31 A LYS 32 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale10 covale both ? A ALA 80 C ? ? ? 1_555 A MSE 81 N ? ? A ALA 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale11 covale both ? A MSE 81 C ? ? ? 1_555 A LYS 82 N ? ? A MSE 80 A LYS 81 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale12 covale both ? A PHE 84 C ? ? ? 1_555 A MSE 85 N ? ? A PHE 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale both ? A MSE 85 C ? ? ? 1_555 A GLY 86 N ? ? A MSE 84 A GLY 85 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale14 covale both ? B GLY 1 C ? ? ? 1_555 B MSE 2 N ? ? B GLY 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale15 covale both ? B MSE 2 C ? ? ? 1_555 B THR 3 N ? ? B MSE 1 B THR 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale16 covale both ? B THR 3 C ? ? ? 1_555 B MSE 4 N ? ? B THR 2 B MSE 3 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale17 covale both ? B MSE 4 C ? ? ? 1_555 B PHE 5 N ? ? B MSE 3 B PHE 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale18 covale both ? B VAL 9 C ? ? ? 1_555 B MSE 10 N ? ? B VAL 8 B MSE 9 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale19 covale both ? B MSE 10 C ? ? ? 1_555 B MSE 11 N ? ? B MSE 9 B MSE 10 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale20 covale both ? B MSE 11 C ? ? ? 1_555 B GLU 12 N ? ? B MSE 10 B GLU 11 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale21 covale both ? B ARG 31 C ? ? ? 1_555 B MSE 32 N ? ? B ARG 30 B MSE 31 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale22 covale both ? B MSE 32 C ? ? ? 1_555 B LYS 33 N ? ? B MSE 31 B LYS 32 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale23 covale both ? B ALA 80 C ? ? ? 1_555 B MSE 81 N ? ? B ALA 79 B MSE 80 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale24 covale both ? B MSE 81 C ? ? ? 1_555 B LYS 82 N ? ? B MSE 80 B LYS 81 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale25 covale both ? B PHE 84 C ? ? ? 1_555 B MSE 85 N ? ? B PHE 83 B MSE 84 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale26 covale both ? B MSE 85 C ? ? ? 1_555 B GLY 86 N ? ? B MSE 84 B GLY 85 1_555 ? ? ? ? ? ? ? 1.326 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 39 ? GLU A 46 ? LEU A 38 GLU A 45 A 2 HIS A 57 ? PHE A 63 ? HIS A 56 PHE A 62 A 3 THR A 3 ? PHE A 13 ? THR A 2 PHE A 12 A 4 ILE A 89 ? PRO A 100 ? ILE A 88 PRO A 99 B 1 LEU B 39 ? GLU B 46 ? LEU B 38 GLU B 45 B 2 HIS B 57 ? PHE B 63 ? HIS B 56 PHE B 62 B 3 THR B 3 ? PHE B 13 ? THR B 2 PHE B 12 B 4 ILE B 89 ? PRO B 100 ? ILE B 88 PRO B 99 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 40 ? N LEU A 39 O ALA A 62 ? O ALA A 61 A 2 3 O SER A 61 ? O SER A 60 N HIS A 7 ? N HIS A 6 A 3 4 N VAL A 8 ? N VAL A 7 O TYR A 95 ? O TYR A 94 B 1 2 N LEU B 40 ? N LEU B 39 O ALA B 62 ? O ALA B 61 B 2 3 O THR B 59 ? O THR B 58 N VAL B 9 ? N VAL B 8 B 3 4 N LEU B 6 ? N LEU B 5 O GLY B 97 ? O GLY B 96 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CL 103 ? 2 'BINDING SITE FOR RESIDUE CL B 103' AC2 Software B ACT 104 ? 5 'BINDING SITE FOR RESIDUE ACT B 104' AC3 Software A EDO 103 ? 5 'BINDING SITE FOR RESIDUE EDO A 103' AC4 Software A EDO 104 ? 8 'BINDING SITE FOR RESIDUE EDO A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ASP B 18 ? ASP B 17 . ? 1_555 ? 2 AC1 2 ARG B 88 ? ARG B 87 . ? 1_555 ? 3 AC2 5 THR A 3 ? THR A 2 . ? 5_675 ? 4 AC2 5 GLU A 98 ? GLU A 97 . ? 1_555 ? 5 AC2 5 GLU A 98 ? GLU A 97 . ? 5_675 ? 6 AC2 5 HIS B 43 ? HIS B 42 . ? 5_675 ? 7 AC2 5 HIS B 43 ? HIS B 42 . ? 1_555 ? 8 AC3 5 HIS A 7 ? HIS A 6 . ? 1_555 ? 9 AC3 5 ASP A 96 ? ASP A 95 . ? 1_555 ? 10 AC3 5 ARG B 23 ? ARG B 22 . ? 5_675 ? 11 AC3 5 ALA B 50 ? ALA B 49 . ? 1_555 ? 12 AC3 5 ARG B 51 ? ARG B 50 . ? 1_555 ? 13 AC4 8 HIS A 7 ? HIS A 6 . ? 1_555 ? 14 AC4 8 VAL A 9 ? VAL A 8 . ? 1_555 ? 15 AC4 8 TYR A 72 ? TYR A 71 . ? 1_555 ? 16 AC4 8 HIS A 78 ? HIS A 77 . ? 1_555 ? 17 AC4 8 LYS A 82 ? LYS A 81 . ? 1_555 ? 18 AC4 8 HOH G . ? HOH A 109 . ? 1_555 ? 19 AC4 8 HOH G . ? HOH A 112 . ? 1_555 ? 20 AC4 8 ARG B 51 ? ARG B 50 . ? 1_555 ? # _database_PDB_matrix.entry_id 2QYC _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QYC _atom_sites.fract_transf_matrix[1][1] 0.01968 _atom_sites.fract_transf_matrix[1][2] 0.01136 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02272 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00703 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 MSE 4 3 3 MSE MSE A . n A 1 5 PHE 5 4 4 PHE PHE A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 HIS 7 6 6 HIS HIS A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 MSE 10 9 9 MSE MSE A . n A 1 11 MSE 11 10 10 MSE MSE A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 PHE 13 12 12 PHE PHE A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 ILE 17 16 16 ILE ILE A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 PHE 21 20 20 PHE PHE A . n A 1 22 PHE 22 21 21 PHE PHE A . n A 1 23 ARG 23 22 22 ARG ARG A . n A 1 24 THR 24 23 23 THR THR A . n A 1 25 VAL 25 24 24 VAL VAL A . n A 1 26 ASP 26 25 25 ASP ASP A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 MSE 32 31 31 MSE MSE A . n A 1 33 LYS 33 32 32 LYS LYS A . n A 1 34 ARG 34 33 33 ARG ARG A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 CYS 36 35 35 CYS CYS A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 HIS 43 42 42 HIS HIS A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 ASN 47 46 46 ASN ASN A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 ALA 50 49 49 ALA ALA A . n A 1 51 ARG 51 50 50 ARG ARG A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 GLN 53 52 52 GLN GLN A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 TYR 55 54 54 TYR TYR A . n A 1 56 THR 56 55 55 THR THR A . n A 1 57 HIS 57 56 56 HIS HIS A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 SER 61 60 60 SER SER A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 PHE 63 62 62 PHE PHE A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 ASP 65 64 64 ASP ASP A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 HIS 69 68 68 HIS HIS A . n A 1 70 ASP 70 69 69 ASP ASP A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 GLN 73 72 72 GLN GLN A . n A 1 74 VAL 74 73 73 VAL VAL A . n A 1 75 CYS 75 74 74 CYS CYS A . n A 1 76 PRO 76 75 75 PRO PRO A . n A 1 77 ALA 77 76 76 ALA ALA A . n A 1 78 HIS 78 77 77 HIS HIS A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 MSE 81 80 80 MSE MSE A . n A 1 82 LYS 82 81 81 LYS LYS A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 PHE 84 83 83 PHE PHE A . n A 1 85 MSE 85 84 84 MSE MSE A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 PRO 87 86 86 PRO PRO A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 ILE 89 88 88 ILE ILE A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 ARG 91 90 90 ARG ARG A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 TYR 95 94 94 TYR TYR A . n A 1 96 ASP 96 95 95 ASP ASP A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 PRO 100 99 99 PRO PRO A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 ILE 102 101 101 ILE ILE A . n A 1 103 GLY 103 102 ? ? ? A . n B 1 1 GLY 1 0 0 GLY GLY B . n B 1 2 MSE 2 1 1 MSE MSE B . n B 1 3 THR 3 2 2 THR THR B . n B 1 4 MSE 4 3 3 MSE MSE B . n B 1 5 PHE 5 4 4 PHE PHE B . n B 1 6 LEU 6 5 5 LEU LEU B . n B 1 7 HIS 7 6 6 HIS HIS B . n B 1 8 VAL 8 7 7 VAL VAL B . n B 1 9 VAL 9 8 8 VAL VAL B . n B 1 10 MSE 10 9 9 MSE MSE B . n B 1 11 MSE 11 10 10 MSE MSE B . n B 1 12 GLU 12 11 11 GLU GLU B . n B 1 13 PHE 13 12 12 PHE PHE B . n B 1 14 ASP 14 13 13 ASP ASP B . n B 1 15 ASP 15 14 14 ASP ASP B . n B 1 16 GLY 16 15 15 GLY GLY B . n B 1 17 ILE 17 16 16 ILE ILE B . n B 1 18 ASP 18 17 17 ASP ASP B . n B 1 19 ALA 19 18 18 ALA ALA B . n B 1 20 GLY 20 19 19 GLY GLY B . n B 1 21 PHE 21 20 20 PHE PHE B . n B 1 22 PHE 22 21 21 PHE PHE B . n B 1 23 ARG 23 22 22 ARG ARG B . n B 1 24 THR 24 23 23 THR THR B . n B 1 25 VAL 25 24 24 VAL VAL B . n B 1 26 ASP 26 25 25 ASP ASP B . n B 1 27 GLU 27 26 26 GLU GLU B . n B 1 28 TYR 28 27 27 TYR TYR B . n B 1 29 VAL 29 28 28 VAL VAL B . n B 1 30 ALA 30 29 29 ALA ALA B . n B 1 31 ARG 31 30 30 ARG ARG B . n B 1 32 MSE 32 31 31 MSE MSE B . n B 1 33 LYS 33 32 32 LYS LYS B . n B 1 34 ARG 34 33 33 ARG ARG B . n B 1 35 GLU 35 34 34 GLU GLU B . n B 1 36 CYS 36 35 35 CYS CYS B . n B 1 37 ASP 37 36 36 ASP ASP B . n B 1 38 GLY 38 37 37 GLY GLY B . n B 1 39 LEU 39 38 38 LEU LEU B . n B 1 40 LEU 40 39 39 LEU LEU B . n B 1 41 LEU 41 40 40 LEU LEU B . n B 1 42 TYR 42 41 41 TYR TYR B . n B 1 43 HIS 43 42 42 HIS HIS B . n B 1 44 PHE 44 43 43 PHE PHE B . n B 1 45 GLY 45 44 44 GLY GLY B . n B 1 46 GLU 46 45 45 GLU GLU B . n B 1 47 ASN 47 46 46 ASN ASN B . n B 1 48 VAL 48 47 47 VAL VAL B . n B 1 49 ALA 49 48 48 ALA ALA B . n B 1 50 ALA 50 49 49 ALA ALA B . n B 1 51 ARG 51 50 50 ARG ARG B . n B 1 52 SER 52 51 51 SER SER B . n B 1 53 GLN 53 52 52 GLN GLN B . n B 1 54 GLY 54 53 53 GLY GLY B . n B 1 55 TYR 55 54 54 TYR TYR B . n B 1 56 THR 56 55 55 THR THR B . n B 1 57 HIS 57 56 56 HIS HIS B . n B 1 58 ALA 58 57 57 ALA ALA B . n B 1 59 THR 59 58 58 THR THR B . n B 1 60 SER 60 59 59 SER SER B . n B 1 61 SER 61 60 60 SER SER B . n B 1 62 ALA 62 61 61 ALA ALA B . n B 1 63 PHE 63 62 62 PHE PHE B . n B 1 64 VAL 64 63 63 VAL VAL B . n B 1 65 ASP 65 64 64 ASP ASP B . n B 1 66 ALA 66 65 65 ALA ALA B . n B 1 67 ALA 67 66 66 ALA ALA B . n B 1 68 ALA 68 67 67 ALA ALA B . n B 1 69 HIS 69 68 68 HIS HIS B . n B 1 70 ASP 70 69 69 ASP ASP B . n B 1 71 ALA 71 70 70 ALA ALA B . n B 1 72 TYR 72 71 71 TYR TYR B . n B 1 73 GLN 73 72 72 GLN GLN B . n B 1 74 VAL 74 73 73 VAL VAL B . n B 1 75 CYS 75 74 74 CYS CYS B . n B 1 76 PRO 76 75 75 PRO PRO B . n B 1 77 ALA 77 76 76 ALA ALA B . n B 1 78 HIS 78 77 77 HIS HIS B . n B 1 79 VAL 79 78 78 VAL VAL B . n B 1 80 ALA 80 79 79 ALA ALA B . n B 1 81 MSE 81 80 80 MSE MSE B . n B 1 82 LYS 82 81 81 LYS LYS B . n B 1 83 ALA 83 82 82 ALA ALA B . n B 1 84 PHE 84 83 83 PHE PHE B . n B 1 85 MSE 85 84 84 MSE MSE B . n B 1 86 GLY 86 85 85 GLY GLY B . n B 1 87 PRO 87 86 86 PRO PRO B . n B 1 88 ARG 88 87 87 ARG ARG B . n B 1 89 ILE 89 88 88 ILE ILE B . n B 1 90 LYS 90 89 89 LYS LYS B . n B 1 91 ARG 91 90 90 ARG ARG B . n B 1 92 VAL 92 91 91 VAL VAL B . n B 1 93 VAL 93 92 92 VAL VAL B . n B 1 94 VAL 94 93 93 VAL VAL B . n B 1 95 TYR 95 94 94 TYR TYR B . n B 1 96 ASP 96 95 95 ASP ASP B . n B 1 97 GLY 97 96 96 GLY GLY B . n B 1 98 GLU 98 97 97 GLU GLU B . n B 1 99 VAL 99 98 98 VAL VAL B . n B 1 100 PRO 100 99 99 PRO PRO B . n B 1 101 ALA 101 100 100 ALA ALA B . n B 1 102 ILE 102 101 101 ILE ILE B . n B 1 103 GLY 103 102 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 103 2 EDO EDO A . D 2 EDO 1 104 3 EDO EDO A . E 3 CL 1 103 1 CL CL B . F 4 ACT 1 104 4 ACT ACT B . G 5 HOH 1 105 5 HOH HOH A . G 5 HOH 2 106 13 HOH HOH A . G 5 HOH 3 107 14 HOH HOH A . G 5 HOH 4 108 16 HOH HOH A . G 5 HOH 5 109 17 HOH HOH A . G 5 HOH 6 110 18 HOH HOH A . G 5 HOH 7 111 19 HOH HOH A . G 5 HOH 8 112 20 HOH HOH A . G 5 HOH 9 113 23 HOH HOH A . G 5 HOH 10 114 26 HOH HOH A . G 5 HOH 11 115 27 HOH HOH A . G 5 HOH 12 116 30 HOH HOH A . G 5 HOH 13 117 32 HOH HOH A . G 5 HOH 14 118 36 HOH HOH A . G 5 HOH 15 119 41 HOH HOH A . G 5 HOH 16 120 42 HOH HOH A . G 5 HOH 17 121 43 HOH HOH A . G 5 HOH 18 122 44 HOH HOH A . G 5 HOH 19 123 47 HOH HOH A . G 5 HOH 20 124 54 HOH HOH A . G 5 HOH 21 125 56 HOH HOH A . G 5 HOH 22 126 57 HOH HOH A . G 5 HOH 23 127 58 HOH HOH A . G 5 HOH 24 128 60 HOH HOH A . G 5 HOH 25 129 61 HOH HOH A . G 5 HOH 26 130 65 HOH HOH A . G 5 HOH 27 131 67 HOH HOH A . G 5 HOH 28 132 69 HOH HOH A . G 5 HOH 29 133 71 HOH HOH A . G 5 HOH 30 134 74 HOH HOH A . G 5 HOH 31 135 76 HOH HOH A . G 5 HOH 32 136 79 HOH HOH A . G 5 HOH 33 137 81 HOH HOH A . G 5 HOH 34 138 82 HOH HOH A . G 5 HOH 35 139 83 HOH HOH A . G 5 HOH 36 140 84 HOH HOH A . G 5 HOH 37 141 85 HOH HOH A . G 5 HOH 38 142 87 HOH HOH A . G 5 HOH 39 143 91 HOH HOH A . G 5 HOH 40 144 92 HOH HOH A . G 5 HOH 41 145 95 HOH HOH A . G 5 HOH 42 146 98 HOH HOH A . G 5 HOH 43 147 99 HOH HOH A . G 5 HOH 44 148 101 HOH HOH A . G 5 HOH 45 149 103 HOH HOH A . G 5 HOH 46 150 104 HOH HOH A . G 5 HOH 47 151 106 HOH HOH A . G 5 HOH 48 152 115 HOH HOH A . G 5 HOH 49 153 116 HOH HOH A . G 5 HOH 50 154 118 HOH HOH A . G 5 HOH 51 155 120 HOH HOH A . G 5 HOH 52 156 121 HOH HOH A . G 5 HOH 53 157 122 HOH HOH A . G 5 HOH 54 158 123 HOH HOH A . G 5 HOH 55 159 124 HOH HOH A . H 5 HOH 1 105 6 HOH HOH B . H 5 HOH 2 106 7 HOH HOH B . H 5 HOH 3 107 8 HOH HOH B . H 5 HOH 4 108 9 HOH HOH B . H 5 HOH 5 109 10 HOH HOH B . H 5 HOH 6 110 11 HOH HOH B . H 5 HOH 7 111 12 HOH HOH B . H 5 HOH 8 112 15 HOH HOH B . H 5 HOH 9 113 21 HOH HOH B . H 5 HOH 10 114 22 HOH HOH B . H 5 HOH 11 115 24 HOH HOH B . H 5 HOH 12 116 25 HOH HOH B . H 5 HOH 13 117 28 HOH HOH B . H 5 HOH 14 118 29 HOH HOH B . H 5 HOH 15 119 31 HOH HOH B . H 5 HOH 16 120 33 HOH HOH B . H 5 HOH 17 121 34 HOH HOH B . H 5 HOH 18 122 35 HOH HOH B . H 5 HOH 19 123 37 HOH HOH B . H 5 HOH 20 124 38 HOH HOH B . H 5 HOH 21 125 39 HOH HOH B . H 5 HOH 22 126 40 HOH HOH B . H 5 HOH 23 127 45 HOH HOH B . H 5 HOH 24 128 46 HOH HOH B . H 5 HOH 25 129 48 HOH HOH B . H 5 HOH 26 130 49 HOH HOH B . H 5 HOH 27 131 50 HOH HOH B . H 5 HOH 28 132 51 HOH HOH B . H 5 HOH 29 133 52 HOH HOH B . H 5 HOH 30 134 53 HOH HOH B . H 5 HOH 31 135 55 HOH HOH B . H 5 HOH 32 136 59 HOH HOH B . H 5 HOH 33 137 62 HOH HOH B . H 5 HOH 34 138 63 HOH HOH B . H 5 HOH 35 139 64 HOH HOH B . H 5 HOH 36 140 66 HOH HOH B . H 5 HOH 37 141 68 HOH HOH B . H 5 HOH 38 142 70 HOH HOH B . H 5 HOH 39 143 72 HOH HOH B . H 5 HOH 40 144 73 HOH HOH B . H 5 HOH 41 145 75 HOH HOH B . H 5 HOH 42 146 77 HOH HOH B . H 5 HOH 43 147 78 HOH HOH B . H 5 HOH 44 148 80 HOH HOH B . H 5 HOH 45 149 86 HOH HOH B . H 5 HOH 46 150 88 HOH HOH B . H 5 HOH 47 151 89 HOH HOH B . H 5 HOH 48 152 90 HOH HOH B . H 5 HOH 49 153 93 HOH HOH B . H 5 HOH 50 154 94 HOH HOH B . H 5 HOH 51 155 96 HOH HOH B . H 5 HOH 52 156 97 HOH HOH B . H 5 HOH 53 157 100 HOH HOH B . H 5 HOH 54 158 102 HOH HOH B . H 5 HOH 55 159 105 HOH HOH B . H 5 HOH 56 160 107 HOH HOH B . H 5 HOH 57 161 108 HOH HOH B . H 5 HOH 58 162 109 HOH HOH B . H 5 HOH 59 163 110 HOH HOH B . H 5 HOH 60 164 111 HOH HOH B . H 5 HOH 61 165 112 HOH HOH B . H 5 HOH 62 166 113 HOH HOH B . H 5 HOH 63 167 114 HOH HOH B . H 5 HOH 64 168 117 HOH HOH B . H 5 HOH 65 169 119 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 4 A MSE 3 ? MET SELENOMETHIONINE 3 A MSE 10 A MSE 9 ? MET SELENOMETHIONINE 4 A MSE 11 A MSE 10 ? MET SELENOMETHIONINE 5 A MSE 32 A MSE 31 ? MET SELENOMETHIONINE 6 A MSE 81 A MSE 80 ? MET SELENOMETHIONINE 7 A MSE 85 A MSE 84 ? MET SELENOMETHIONINE 8 B MSE 2 B MSE 1 ? MET SELENOMETHIONINE 9 B MSE 4 B MSE 3 ? MET SELENOMETHIONINE 10 B MSE 10 B MSE 9 ? MET SELENOMETHIONINE 11 B MSE 11 B MSE 10 ? MET SELENOMETHIONINE 12 B MSE 32 B MSE 31 ? MET SELENOMETHIONINE 13 B MSE 81 B MSE 80 ? MET SELENOMETHIONINE 14 B MSE 85 B MSE 84 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2370 ? 2 'ABSA (A^2)' 7330 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 88.0228220407 0.0000000000 0.0000000000 -1.0000000000 47.3900000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B ACT 104 ? F ACT . 2 1 A HOH 111 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 4.9510 32.7050 4.8840 -0.0197 -0.0193 -0.0438 0.0034 0.0076 -0.0124 0.6199 2.0039 1.8591 0.6640 0.2381 0.7148 -0.0402 0.0973 -0.0570 0.1283 -0.0051 -0.0596 -0.1410 0.0413 0.0338 'X-RAY DIFFRACTION' 2 ? refined 3.1290 31.3650 25.2300 0.0200 -0.0622 0.0028 0.0158 -0.0038 -0.0002 0.4233 0.3220 0.8226 -0.2389 0.1431 0.2292 -0.0365 0.0370 -0.0005 0.0020 0.0017 0.0177 0.0341 0.1585 0.0227 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 102 ALL A 0 A 101 'X-RAY DIFFRACTION' ? 2 2 B 1 B 102 ALL B 0 B 101 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ; BIOMOLECULE: 1, 2 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON BURIED SURFACE AREA. CRYSTAL STRUCTURE PACKING SUGGESTS THAT THE BIOLOGICALLY RELEVANT FORM IS A DIMER. SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; 999 ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 52 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 147 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 50 ? ? -94.55 47.02 2 1 ARG B 50 ? ? -94.13 45.54 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 14 ? OD1 ? A ASP 15 OD1 2 1 Y 1 A ASP 14 ? OD2 ? A ASP 15 OD2 3 1 Y 1 A ASP 17 ? CG ? A ASP 18 CG 4 1 Y 1 A ASP 17 ? OD1 ? A ASP 18 OD1 5 1 Y 1 A ASP 17 ? OD2 ? A ASP 18 OD2 6 1 Y 1 A ARG 33 ? CG ? A ARG 34 CG 7 1 Y 1 A ARG 33 ? CD ? A ARG 34 CD 8 1 Y 1 A ARG 33 ? NE ? A ARG 34 NE 9 1 Y 1 A ARG 33 ? CZ ? A ARG 34 CZ 10 1 Y 1 A ARG 33 ? NH1 ? A ARG 34 NH1 11 1 Y 1 A ARG 33 ? NH2 ? A ARG 34 NH2 12 1 Y 1 A ILE 101 ? CG1 ? A ILE 102 CG1 13 1 Y 1 A ILE 101 ? CG2 ? A ILE 102 CG2 14 1 Y 1 A ILE 101 ? CD1 ? A ILE 102 CD1 15 1 Y 1 B LYS 81 ? CG ? B LYS 82 CG 16 1 Y 1 B LYS 81 ? CD ? B LYS 82 CD 17 1 Y 1 B LYS 81 ? CE ? B LYS 82 CE 18 1 Y 1 B LYS 81 ? NZ ? B LYS 82 NZ 19 1 Y 1 B GLU 97 ? CD ? B GLU 98 CD 20 1 Y 1 B GLU 97 ? OE1 ? B GLU 98 OE1 21 1 Y 1 B GLU 97 ? OE2 ? B GLU 98 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 102 ? A GLY 103 2 1 Y 1 B GLY 102 ? B GLY 103 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'CHLORIDE ION' CL 4 'ACETATE ION' ACT 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #