HEADER SIGNALING PROTEIN 17-AUG-07 2R09
TITLE CRYSTAL STRUCTURE OF AUTOINHIBITED FORM OF GRP1 ARF GTPASE EXCHANGE
TITLE 2 FACTOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYTOHESIN-3;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: SEC7 DOMAIN 2 (RESIDUES 63-399);
COMPND 5 SYNONYM: PH, SEC7 AND COILED-COIL DOMAIN-CONTAINING PROTEIN 3, CLM3,
COMPND 6 SEC7 HOMOLOG C, MSEC7-3, ARF NUCLEOTIDE-BINDING SITE OPENER 3,
COMPND 7 PROTEIN ARNO3, GENERAL RECEPTOR OF PHOSPHOINOSITIDES 1, GRP1;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: PSCD3, GRP1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS AUTOINHIBITION, GRP1, PIP3, ARF, 3-PHOSPHOINOSITIDE, PLECKSTRIN
KEYWDS 2 HOMOLOGY DOMAIN, GUANINE-NUCLEOTIDE RELEASING FACTOR, SIGNALING
KEYWDS 3 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.P.DINITTO,A.DELPRATO,M.T.GABE LEE,T.C.CRONIN,S.HUANG,A.GUILHERME,
AUTHOR 2 M.P.CZECH,D.G.LAMBRIGHT
REVDAT 5 30-OCT-24 2R09 1 REMARK
REVDAT 4 20-OCT-21 2R09 1 REMARK SEQADV HETSYN LINK
REVDAT 3 13-JUL-11 2R09 1 VERSN
REVDAT 2 24-FEB-09 2R09 1 VERSN
REVDAT 1 04-DEC-07 2R09 0
JRNL AUTH J.P.DINITTO,A.DELPRATO,M.T.GABE LEE,T.C.CRONIN,S.HUANG,
JRNL AUTH 2 A.GUILHERME,M.P.CZECH,D.G.LAMBRIGHT
JRNL TITL STRUCTURAL BASIS AND MECHANISM OF AUTOREGULATION IN
JRNL TITL 2 3-PHOSPHOINOSITIDE-DEPENDENT GRP1 FAMILY ARF GTPASE EXCHANGE
JRNL TITL 3 FACTORS.
JRNL REF MOL.CELL V. 28 569 2007
JRNL REFN ISSN 1097-2765
JRNL PMID 18042453
JRNL DOI 10.1016/J.MOLCEL.2007.09.017
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0005
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 68704
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.206
REMARK 3 R VALUE (WORKING SET) : 0.204
REMARK 3 FREE R VALUE : 0.241
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 3652
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95
REMARK 3 REFLECTION IN BIN (WORKING SET) : 4969
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.2200
REMARK 3 BIN FREE R VALUE SET COUNT : 267
REMARK 3 BIN FREE R VALUE : 0.2490
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5603
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 128
REMARK 3 SOLVENT ATOMS : 807
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.48
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.91000
REMARK 3 B22 (A**2) : -1.53000
REMARK 3 B33 (A**2) : -0.38000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.155
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.055
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5858 ; 0.008 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7913 ; 1.074 ; 1.973
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 4.995 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;33.141 ;23.750
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1022 ;12.414 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.201 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 819 ; 0.073 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4442 ; 0.004 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2719 ; 0.182 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4009 ; 0.300 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 784 ; 0.128 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 125 ; 0.163 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 86 ; 0.145 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3526 ; 0.819 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5512 ; 1.100 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2630 ; 1.633 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2401 ; 2.468 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 2R09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-07.
REMARK 100 THE DEPOSITION ID IS D_1000044264.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-SEP-04
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSLS
REMARK 200 BEAMLINE : X25
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791, 0.97872, 1.1627
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72844
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 6.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: MAD
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD
REMARK 200 SOFTWARE USED: SHARP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 56.20
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG 6000, 50 MM TRIS, PH 8.0,
REMARK 280 0.2 M LI2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.79950
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.65400
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.30550
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.65400
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.79950
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.30550
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PQS
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PQS
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MSE A 53
REMARK 465 ASN A 397
REMARK 465 LYS A 398
REMARK 465 LYS A 399
REMARK 465 MSE B 53
REMARK 465 ILE B 395
REMARK 465 ALA B 396
REMARK 465 ASN B 397
REMARK 465 LYS B 398
REMARK 465 LYS B 399
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 381 158.93 68.74
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4IP A 405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 406
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 407
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4IP B 400
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2R0D RELATED DB: PDB
DBREF 2R09 A 63 399 UNP O08967 CYH3_MOUSE 63 399
DBREF 2R09 B 63 399 UNP O08967 CYH3_MOUSE 63 399
SEQADV 2R09 MSE A 53 UNP O08967 EXPRESSION TAG
SEQADV 2R09 GLY A 54 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS A 55 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS A 56 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS A 57 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS A 58 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS A 59 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS A 60 UNP O08967 EXPRESSION TAG
SEQADV 2R09 GLY A 61 UNP O08967 EXPRESSION TAG
SEQADV 2R09 SER A 62 UNP O08967 EXPRESSION TAG
SEQADV 2R09 ALA A 68 UNP O08967 LYS 68 ENGINEERED MUTATION
SEQADV 2R09 TYR A 260 UNP O08967 HIS 260 ENGINEERED MUTATION
SEQADV 2R09 MSE B 53 UNP O08967 EXPRESSION TAG
SEQADV 2R09 GLY B 54 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS B 55 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS B 56 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS B 57 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS B 58 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS B 59 UNP O08967 EXPRESSION TAG
SEQADV 2R09 HIS B 60 UNP O08967 EXPRESSION TAG
SEQADV 2R09 GLY B 61 UNP O08967 EXPRESSION TAG
SEQADV 2R09 SER B 62 UNP O08967 EXPRESSION TAG
SEQADV 2R09 ALA B 68 UNP O08967 LYS 68 ENGINEERED MUTATION
SEQADV 2R09 TYR B 260 UNP O08967 HIS 260 ENGINEERED MUTATION
SEQRES 1 A 347 MSE GLY HIS HIS HIS HIS HIS HIS GLY SER THR THR GLN
SEQRES 2 A 347 ARG ASN ALA GLN ILE ALA MSE GLY ARG LYS LYS PHE ASN
SEQRES 3 A 347 MSE ASP PRO LYS LYS GLY ILE GLN PHE LEU ILE GLU ASN
SEQRES 4 A 347 ASP LEU LEU GLN SER SER PRO GLU ASP VAL ALA GLN PHE
SEQRES 5 A 347 LEU TYR LYS GLY GLU GLY LEU ASN LYS THR VAL ILE GLY
SEQRES 6 A 347 ASP TYR LEU GLY GLU ARG ASP ASP PHE ASN ILE LYS VAL
SEQRES 7 A 347 LEU GLN ALA PHE VAL GLU LEU HIS GLU PHE ALA ASP LEU
SEQRES 8 A 347 ASN LEU VAL GLN ALA LEU ARG GLN PHE LEU TRP SER PHE
SEQRES 9 A 347 ARG LEU PRO GLY GLU ALA GLN LYS ILE ASP ARG MSE MSE
SEQRES 10 A 347 GLU ALA PHE ALA SER ARG TYR CYS LEU CYS ASN PRO GLY
SEQRES 11 A 347 VAL PHE GLN SER THR ASP THR CYS TYR VAL LEU SER PHE
SEQRES 12 A 347 ALA ILE ILE MSE LEU ASN THR SER LEU HIS ASN HIS ASN
SEQRES 13 A 347 VAL ARG ASP LYS PRO THR ALA GLU ARG PHE ILE THR MSE
SEQRES 14 A 347 ASN ARG GLY ILE ASN GLU GLY GLY ASP LEU PRO GLU GLU
SEQRES 15 A 347 LEU LEU ARG ASN LEU TYR GLU SER ILE LYS ASN GLU PRO
SEQRES 16 A 347 PHE LYS ILE PRO GLU ASP ASP GLY ASN ASP LEU THR TYR
SEQRES 17 A 347 THR PHE PHE ASN PRO ASP ARG GLU GLY TRP LEU LEU LYS
SEQRES 18 A 347 LEU GLY GLY ARG VAL LYS THR TRP LYS ARG ARG TRP PHE
SEQRES 19 A 347 ILE LEU THR ASP ASN CYS LEU TYR TYR PHE GLU TYR THR
SEQRES 20 A 347 THR ASP LYS GLU PRO ARG GLY ILE ILE PRO LEU GLU ASN
SEQRES 21 A 347 LEU SER ILE ARG GLU VAL GLU ASP PRO ARG LYS PRO ASN
SEQRES 22 A 347 CYS PHE GLU LEU TYR ASN PRO SER HIS LYS GLY GLN VAL
SEQRES 23 A 347 ILE LYS ALA CYS LYS THR GLU ALA ASP GLY ARG VAL VAL
SEQRES 24 A 347 GLU GLY ASN HIS VAL VAL TYR ARG ILE SER ALA PRO SER
SEQRES 25 A 347 PRO GLU GLU LYS GLU GLU TRP MSE LYS SER ILE LYS ALA
SEQRES 26 A 347 SER ILE SER ARG ASP PRO PHE TYR ASP MSE LEU ALA THR
SEQRES 27 A 347 ARG LYS ARG ARG ILE ALA ASN LYS LYS
SEQRES 1 B 347 MSE GLY HIS HIS HIS HIS HIS HIS GLY SER THR THR GLN
SEQRES 2 B 347 ARG ASN ALA GLN ILE ALA MSE GLY ARG LYS LYS PHE ASN
SEQRES 3 B 347 MSE ASP PRO LYS LYS GLY ILE GLN PHE LEU ILE GLU ASN
SEQRES 4 B 347 ASP LEU LEU GLN SER SER PRO GLU ASP VAL ALA GLN PHE
SEQRES 5 B 347 LEU TYR LYS GLY GLU GLY LEU ASN LYS THR VAL ILE GLY
SEQRES 6 B 347 ASP TYR LEU GLY GLU ARG ASP ASP PHE ASN ILE LYS VAL
SEQRES 7 B 347 LEU GLN ALA PHE VAL GLU LEU HIS GLU PHE ALA ASP LEU
SEQRES 8 B 347 ASN LEU VAL GLN ALA LEU ARG GLN PHE LEU TRP SER PHE
SEQRES 9 B 347 ARG LEU PRO GLY GLU ALA GLN LYS ILE ASP ARG MSE MSE
SEQRES 10 B 347 GLU ALA PHE ALA SER ARG TYR CYS LEU CYS ASN PRO GLY
SEQRES 11 B 347 VAL PHE GLN SER THR ASP THR CYS TYR VAL LEU SER PHE
SEQRES 12 B 347 ALA ILE ILE MSE LEU ASN THR SER LEU HIS ASN HIS ASN
SEQRES 13 B 347 VAL ARG ASP LYS PRO THR ALA GLU ARG PHE ILE THR MSE
SEQRES 14 B 347 ASN ARG GLY ILE ASN GLU GLY GLY ASP LEU PRO GLU GLU
SEQRES 15 B 347 LEU LEU ARG ASN LEU TYR GLU SER ILE LYS ASN GLU PRO
SEQRES 16 B 347 PHE LYS ILE PRO GLU ASP ASP GLY ASN ASP LEU THR TYR
SEQRES 17 B 347 THR PHE PHE ASN PRO ASP ARG GLU GLY TRP LEU LEU LYS
SEQRES 18 B 347 LEU GLY GLY ARG VAL LYS THR TRP LYS ARG ARG TRP PHE
SEQRES 19 B 347 ILE LEU THR ASP ASN CYS LEU TYR TYR PHE GLU TYR THR
SEQRES 20 B 347 THR ASP LYS GLU PRO ARG GLY ILE ILE PRO LEU GLU ASN
SEQRES 21 B 347 LEU SER ILE ARG GLU VAL GLU ASP PRO ARG LYS PRO ASN
SEQRES 22 B 347 CYS PHE GLU LEU TYR ASN PRO SER HIS LYS GLY GLN VAL
SEQRES 23 B 347 ILE LYS ALA CYS LYS THR GLU ALA ASP GLY ARG VAL VAL
SEQRES 24 B 347 GLU GLY ASN HIS VAL VAL TYR ARG ILE SER ALA PRO SER
SEQRES 25 B 347 PRO GLU GLU LYS GLU GLU TRP MSE LYS SER ILE LYS ALA
SEQRES 26 B 347 SER ILE SER ARG ASP PRO PHE TYR ASP MSE LEU ALA THR
SEQRES 27 B 347 ARG LYS ARG ARG ILE ALA ASN LYS LYS
MODRES 2R09 MSE A 72 MET SELENOMETHIONINE
MODRES 2R09 MSE A 79 MET SELENOMETHIONINE
MODRES 2R09 MSE A 168 MET SELENOMETHIONINE
MODRES 2R09 MSE A 169 MET SELENOMETHIONINE
MODRES 2R09 MSE A 199 MET SELENOMETHIONINE
MODRES 2R09 MSE A 221 MET SELENOMETHIONINE
MODRES 2R09 MSE A 372 MET SELENOMETHIONINE
MODRES 2R09 MSE A 387 MET SELENOMETHIONINE
MODRES 2R09 MSE B 72 MET SELENOMETHIONINE
MODRES 2R09 MSE B 79 MET SELENOMETHIONINE
MODRES 2R09 MSE B 168 MET SELENOMETHIONINE
MODRES 2R09 MSE B 169 MET SELENOMETHIONINE
MODRES 2R09 MSE B 199 MET SELENOMETHIONINE
MODRES 2R09 MSE B 221 MET SELENOMETHIONINE
MODRES 2R09 MSE B 372 MET SELENOMETHIONINE
MODRES 2R09 MSE B 387 MET SELENOMETHIONINE
HET MSE A 72 8
HET MSE A 79 8
HET MSE A 168 8
HET MSE A 169 8
HET MSE A 199 8
HET MSE A 221 8
HET MSE A 372 8
HET MSE A 387 8
HET MSE B 72 8
HET MSE B 79 8
HET MSE B 168 8
HET MSE B 169 8
HET MSE B 199 8
HET MSE B 221 8
HET MSE B 372 8
HET MSE B 387 8
HET SO4 A 1 5
HET SO4 A 400 5
HET SO4 A 401 5
HET SO4 A 402 5
HET SO4 A 403 5
HET SO4 A 404 5
HET 4IP A 405 28
HET PGE A 406 10
HET PE5 A 407 27
HET SO4 B 1 5
HET 4IP B 400 28
HETNAM MSE SELENOMETHIONINE
HETNAM SO4 SULFATE ION
HETNAM 4IP INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
HETNAM PGE TRIETHYLENE GLYCOL
HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE
HETSYN 3 PE5 GLYCOL PEG400
FORMUL 1 MSE 16(C5 H11 N O2 SE)
FORMUL 3 SO4 7(O4 S 2-)
FORMUL 9 4IP 2(C6 H16 O18 P4)
FORMUL 10 PGE C6 H14 O4
FORMUL 11 PE5 C18 H38 O9
FORMUL 14 HOH *807(H2 O)
HELIX 1 1 THR A 63 ASP A 80 1 18
HELIX 2 2 ASP A 80 ASN A 91 1 12
HELIX 3 3 SER A 97 GLY A 108 1 12
HELIX 4 4 ASN A 112 GLU A 122 1 11
HELIX 5 5 ASP A 124 LEU A 137 1 14
HELIX 6 6 ASN A 144 LEU A 153 1 10
HELIX 7 7 GLU A 161 ASN A 180 1 20
HELIX 8 8 SER A 186 ASN A 206 1 21
HELIX 9 9 THR A 214 ASN A 222 1 9
HELIX 10 10 PRO A 232 GLU A 246 1 15
HELIX 11 11 ASP A 257 THR A 261 5 5
HELIX 12 12 SER A 364 ARG A 381 1 18
HELIX 13 13 ASP A 382 ALA A 396 1 15
HELIX 14 14 HIS B 60 ASP B 80 1 21
HELIX 15 15 ASP B 80 ASN B 91 1 12
HELIX 16 16 SER B 97 GLY B 108 1 12
HELIX 17 17 ASN B 112 GLY B 121 1 10
HELIX 18 18 ASP B 124 LEU B 137 1 14
HELIX 19 19 ASN B 144 LEU B 153 1 10
HELIX 20 20 GLU B 161 ASN B 180 1 20
HELIX 21 21 SER B 186 ASN B 206 1 21
HELIX 22 22 THR B 214 ASN B 222 1 9
HELIX 23 23 PRO B 232 GLU B 246 1 15
HELIX 24 24 ASP B 257 THR B 261 5 5
HELIX 25 25 SER B 364 ARG B 381 1 18
HELIX 26 26 ARG B 381 ARG B 394 1 14
SHEET 1 A 9 SER A 314 VAL A 318 0
SHEET 2 A 9 CYS A 326 TYR A 330 -1 O GLU A 328 N ARG A 316
SHEET 3 A 9 TYR A 358 SER A 361 -1 O ILE A 360 N PHE A 327
SHEET 4 A 9 ARG A 267 LEU A 274 -1 N LEU A 272 O SER A 361
SHEET 5 A 9 TRP A 281 THR A 289 -1 O PHE A 286 N GLY A 269
SHEET 6 A 9 CYS A 292 PHE A 296 -1 O TYR A 294 N ILE A 287
SHEET 7 A 9 GLY A 306 PRO A 309 -1 O ILE A 308 N LEU A 293
SHEET 8 A 9 CYS A 342 THR A 344 -1 O CYS A 342 N ILE A 307
SHEET 9 A 9 VAL A 350 GLU A 352 -1 O VAL A 351 N LYS A 343
SHEET 1 B 9 SER B 314 VAL B 318 0
SHEET 2 B 9 CYS B 326 TYR B 330 -1 O GLU B 328 N ARG B 316
SHEET 3 B 9 TYR B 358 SER B 361 -1 O ILE B 360 N PHE B 327
SHEET 4 B 9 ARG B 267 LEU B 274 -1 N LEU B 272 O SER B 361
SHEET 5 B 9 TRP B 281 THR B 289 -1 O LEU B 288 N ARG B 267
SHEET 6 B 9 CYS B 292 PHE B 296 -1 O TYR B 294 N ILE B 287
SHEET 7 B 9 GLY B 306 PRO B 309 -1 O ILE B 308 N LEU B 293
SHEET 8 B 9 CYS B 342 THR B 344 -1 O CYS B 342 N ILE B 307
SHEET 9 B 9 VAL B 350 GLU B 352 -1 O VAL B 351 N LYS B 343
LINK C ALA A 71 N MSE A 72 1555 1555 1.34
LINK C MSE A 72 N GLY A 73 1555 1555 1.33
LINK C ASN A 78 N MSE A 79 1555 1555 1.33
LINK C MSE A 79 N ASP A 80 1555 1555 1.33
LINK C ARG A 167 N MSE A 168 1555 1555 1.33
LINK C MSE A 168 N MSE A 169 1555 1555 1.33
LINK C MSE A 169 N GLU A 170 1555 1555 1.33
LINK C ILE A 198 N MSE A 199 1555 1555 1.34
LINK C MSE A 199 N LEU A 200 1555 1555 1.34
LINK C THR A 220 N MSE A 221 1555 1555 1.34
LINK C MSE A 221 N ASN A 222 1555 1555 1.33
LINK C TRP A 371 N MSE A 372 1555 1555 1.33
LINK C MSE A 372 N LYS A 373 1555 1555 1.33
LINK C ASP A 386 N MSE A 387 1555 1555 1.33
LINK C MSE A 387 N LEU A 388 1555 1555 1.33
LINK C ALA B 71 N MSE B 72 1555 1555 1.33
LINK C MSE B 72 N GLY B 73 1555 1555 1.33
LINK C ASN B 78 N MSE B 79 1555 1555 1.33
LINK C MSE B 79 N ASP B 80 1555 1555 1.33
LINK C ARG B 167 N MSE B 168 1555 1555 1.33
LINK C MSE B 168 N MSE B 169 1555 1555 1.33
LINK C MSE B 169 N GLU B 170 1555 1555 1.33
LINK C ILE B 198 N MSE B 199 1555 1555 1.33
LINK C MSE B 199 N LEU B 200 1555 1555 1.33
LINK C THR B 220 N MSE B 221 1555 1555 1.33
LINK C MSE B 221 N ASN B 222 1555 1555 1.33
LINK C TRP B 371 N MSE B 372 1555 1555 1.33
LINK C MSE B 372 N LYS B 373 1555 1555 1.34
LINK C ASP B 386 N MSE B 387 1555 1555 1.34
LINK C MSE B 387 N LEU B 388 1555 1555 1.33
SITE 1 AC1 7 HIS A 57 HIS A 58 HIS A 60 HOH A 695
SITE 2 AC1 7 LEU B 272 LYS B 323 PRO B 324
SITE 1 AC2 7 GLN A 147 ARG A 150 SER A 242 GLN A 337
SITE 2 AC2 7 HOH A 448 HOH A 498 HOH A 534
SITE 1 AC3 9 ARG A 210 HOH A 440 HOH A 517 HOH A 741
SITE 2 AC3 9 HOH A 760 HOH A 799 HIS B 55 HIS B 56
SITE 3 AC3 9 HIS B 57
SITE 1 AC4 5 ARG A 217 HOH A 557 HOH A 599 HOH A 788
SITE 2 AC4 5 HIS B 60
SITE 1 AC5 3 LYS A 282 ARG A 284 HOH A 693
SITE 1 AC6 5 ASP A 301 LYS A 302 GLU A 303 HOH A 569
SITE 2 AC6 5 HOH A 774
SITE 1 AC7 6 TRP A 270 PRO A 363 GLY B 54 HOH B 535
SITE 2 AC7 6 HOH B 578 HOH B 616
SITE 1 AC8 24 LYS A 273 GLY A 275 GLY A 276 ARG A 277
SITE 2 AC8 24 VAL A 278 THR A 280 LYS A 282 ARG A 284
SITE 3 AC8 24 TYR A 295 ARG A 305 LYS A 343 ASN A 354
SITE 4 AC8 24 HIS A 355 HOH A 409 HOH A 415 HOH A 418
SITE 5 AC8 24 HOH A 430 HOH A 432 HOH A 442 HOH A 450
SITE 6 AC8 24 HOH A 513 HOH A 556 HOH A 651 HOH A 744
SITE 1 AC9 3 ASN A 208 PHE A 263 HOH A 684
SITE 1 BC1 12 ALA A 196 MSE A 221 ASN A 222 ARG A 223
SITE 2 BC1 12 THR A 289 ASP A 290 TYR A 385 LEU A 388
SITE 3 BC1 12 ALA A 389 LYS A 392 SER B 62 GLN B 65
SITE 1 BC2 23 LYS B 107 LYS B 273 GLY B 275 GLY B 276
SITE 2 BC2 23 ARG B 277 VAL B 278 THR B 280 LYS B 282
SITE 3 BC2 23 ARG B 284 TYR B 295 ARG B 305 LYS B 343
SITE 4 BC2 23 ASN B 354 HIS B 355 HOH B 404 HOH B 416
SITE 5 BC2 23 HOH B 417 HOH B 431 HOH B 433 HOH B 495
SITE 6 BC2 23 HOH B 621 HOH B 639 HOH B 645
CRYST1 83.599 94.611 115.308 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011962 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010570 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008672 0.00000