HEADER TRANSFERASE 21-AUG-07 2R0T TITLE CRYSTAL STRUCTURE OF GDP-4-KETO-6-DEOXYMANNOSE-3-DEHYDRATASE WITH A TITLE 2 TRAPPED PLP-GLUTAMATE GEMINAL DIAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAMINE 5-PHOSPHATE-DEPENDENT DEHYDRASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: WBDK; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: O55:H7 STRAIN 5A; SOURCE 5 GENE: WBDK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS COLITOSE, ASPARTATE AMINOTRANSFERASE, GEMINAL DIAMINE, PYRIDOXAL KEYWDS 2 PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.D.COOK,H.M.HOLDEN REVDAT 6 30-AUG-23 2R0T 1 REMARK REVDAT 5 20-OCT-21 2R0T 1 SEQADV REVDAT 4 09-SEP-20 2R0T 1 KEYWDS REMARK SEQADV LINK REVDAT 3 14-DEC-16 2R0T 1 TITLE VERSN REVDAT 2 24-FEB-09 2R0T 1 VERSN REVDAT 1 18-DEC-07 2R0T 0 JRNL AUTH P.D.COOK,H.M.HOLDEN JRNL TITL A STRUCTURAL STUDY OF JRNL TITL 2 GDP-4-KETO-6-DEOXY-D-MANNOSE-3-DEHYDRATASE: CAUGHT IN THE JRNL TITL 3 ACT OF GEMINAL DIAMINE FORMATION JRNL REF BIOCHEMISTRY V. 46 14215 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17997582 JRNL DOI 10.1021/BI701686S REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 60923 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6003 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1850 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 65664 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : OVERALL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MONTEL OPICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PROTEUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60929 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06260 REMARK 200 FOR THE DATA SET : 9.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.42 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 2GMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3400, 100MM MES, 600MM KCL, REMARK 280 2MM PLP, 2MM 2-OXOGLUTARATE, PH 6.0, BATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.45250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 PRO B 5 C - N - CD ANGL. DEV. = -25.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 30 108.22 -32.75 REMARK 500 ASP A 153 68.96 -66.70 REMARK 500 MET A 193 -72.39 80.84 REMARK 500 GLU A 237 -76.23 -85.99 REMARK 500 TRP A 301 65.99 35.66 REMARK 500 VAL A 334 -113.34 55.56 REMARK 500 ASN A 354 -87.03 58.24 REMARK 500 LEU A 387 47.41 -94.45 REMARK 500 MET B 30 117.94 -31.34 REMARK 500 SER B 87 177.74 179.62 REMARK 500 TYR B 186 -56.14 -21.52 REMARK 500 LYS B 188 -164.41 -75.75 REMARK 500 MET B 193 -73.86 79.69 REMARK 500 LYS B 285 -74.67 -33.07 REMARK 500 ASP B 311 88.83 65.72 REMARK 500 SER B 312 -20.48 -145.92 REMARK 500 GLU B 321 -63.28 -28.52 REMARK 500 VAL B 334 -107.86 53.88 REMARK 500 ASN B 354 -96.75 59.28 REMARK 500 VAL B 356 47.95 -141.84 REMARK 500 LEU B 387 43.41 -104.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 LYSINE 188 IS COVALENTLY ATTACHED TO THE PLP-CONTAINING REMARK 600 INTERMEDIATE PGU 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGU A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGU B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GMS RELATED DB: PDB REMARK 900 E COLI GDP-4-KETO-6-DEOXY-D-MANNOSE-3-DEHYDRATASE WITH BOUND REMARK 900 HYDRATED PLP REMARK 900 RELATED ID: 2GMU RELATED DB: PDB REMARK 900 E COLI GDP-4-KETO-6-DEOXY-D-MANNOSE-3-DEHYDRATASE COMPLEXED WITH REMARK 900 PLP-GLUTAMATE KETIMINE INTERMEDIATE DBREF 2R0T A 1 388 UNP Q9F118 Q9F118_ECOLX 1 388 DBREF 2R0T B 1 388 UNP Q9F118 Q9F118_ECOLX 1 388 SEQADV 2R0T GLY A -1 UNP Q9F118 EXPRESSION TAG SEQADV 2R0T HIS A 0 UNP Q9F118 EXPRESSION TAG SEQADV 2R0T LYS A 188 UNP Q9F118 HIS 188 ENGINEERED MUTATION SEQADV 2R0T GLY B -1 UNP Q9F118 EXPRESSION TAG SEQADV 2R0T HIS B 0 UNP Q9F118 EXPRESSION TAG SEQADV 2R0T LYS B 188 UNP Q9F118 HIS 188 ENGINEERED MUTATION SEQRES 1 A 390 GLY HIS MET ILE ASN TYR PRO LEU ALA SER SER THR TRP SEQRES 2 A 390 ASP ASP LEU GLU TYR LYS ALA ILE GLN SER VAL LEU ASP SEQRES 3 A 390 SER LYS MET PHE THR MET GLY GLU TYR VAL LYS GLN TYR SEQRES 4 A 390 GLU THR GLN PHE ALA LYS THR PHE GLY SER LYS TYR ALA SEQRES 5 A 390 VAL MET VAL SER SER GLY SER THR ALA ASN LEU LEU MET SEQRES 6 A 390 ILE ALA ALA LEU PHE PHE THR LYS LYS PRO ARG LEU LYS SEQRES 7 A 390 LYS GLY ASP GLU ILE ILE VAL PRO ALA VAL SER TRP SER SEQRES 8 A 390 THR THR TYR TYR PRO LEU GLN GLN TYR GLY LEU ARG VAL SEQRES 9 A 390 LYS PHE VAL ASP ILE ASP ILE ASN THR LEU ASN ILE ASP SEQRES 10 A 390 ILE GLU SER LEU LYS GLU ALA VAL THR ASP SER THR LYS SEQRES 11 A 390 ALA ILE LEU THR VAL ASN LEU LEU GLY ASN PRO ASN ASN SEQRES 12 A 390 PHE ASP GLU ILE ASN LYS ILE ILE GLY GLY ARG ASP ILE SEQRES 13 A 390 ILE LEU LEU GLU ASP ASN CYS GLU SER MET GLY ALA THR SEQRES 14 A 390 PHE ASN ASN LYS CYS ALA GLY THR PHE GLY LEU MET GLY SEQRES 15 A 390 THR PHE SER SER PHE TYR SER LYS HIS ILE ALA THR MET SEQRES 16 A 390 GLU GLY GLY CYS ILE VAL THR ASP ASP GLU GLU ILE TYR SEQRES 17 A 390 HIS ILE LEU LEU CYS ILE ARG ALA HIS GLY TRP THR ARG SEQRES 18 A 390 ASN LEU PRO LYS LYS ASN LYS VAL THR GLY VAL LYS SER SEQRES 19 A 390 ASP ASP GLN PHE GLU GLU SER PHE LYS PHE VAL LEU PRO SEQRES 20 A 390 GLY TYR ASN VAL ARG PRO LEU GLU MET SER GLY ALA ILE SEQRES 21 A 390 GLY ILE GLU GLN LEU LYS LYS LEU PRO ARG PHE ILE SER SEQRES 22 A 390 VAL ARG ARG LYS ASN ALA GLU TYR PHE LEU ASP LYS PHE SEQRES 23 A 390 LYS ASP HIS PRO TYR LEU ASP VAL GLN GLN GLU THR GLY SEQRES 24 A 390 GLU SER SER TRP PHE GLY PHE SER PHE ILE ILE LYS LYS SEQRES 25 A 390 ASP SER GLY VAL ILE ARG LYS GLN LEU VAL GLU ASN LEU SEQRES 26 A 390 ASN SER ALA GLY ILE GLU CYS ARG PRO ILE VAL THR GLY SEQRES 27 A 390 ASN PHE LEU LYS ASN THR ASP VAL LEU LYS TYR PHE ASP SEQRES 28 A 390 TYR THR VAL HIS ASN ASN VAL ASP ASN ALA GLU TYR LEU SEQRES 29 A 390 ASP LYS ASN GLY LEU PHE VAL GLY ASN HIS GLN ILE GLU SEQRES 30 A 390 LEU PHE ASP GLU ILE ASP TYR LEU ARG GLU VAL LEU LYS SEQRES 1 B 390 GLY HIS MET ILE ASN TYR PRO LEU ALA SER SER THR TRP SEQRES 2 B 390 ASP ASP LEU GLU TYR LYS ALA ILE GLN SER VAL LEU ASP SEQRES 3 B 390 SER LYS MET PHE THR MET GLY GLU TYR VAL LYS GLN TYR SEQRES 4 B 390 GLU THR GLN PHE ALA LYS THR PHE GLY SER LYS TYR ALA SEQRES 5 B 390 VAL MET VAL SER SER GLY SER THR ALA ASN LEU LEU MET SEQRES 6 B 390 ILE ALA ALA LEU PHE PHE THR LYS LYS PRO ARG LEU LYS SEQRES 7 B 390 LYS GLY ASP GLU ILE ILE VAL PRO ALA VAL SER TRP SER SEQRES 8 B 390 THR THR TYR TYR PRO LEU GLN GLN TYR GLY LEU ARG VAL SEQRES 9 B 390 LYS PHE VAL ASP ILE ASP ILE ASN THR LEU ASN ILE ASP SEQRES 10 B 390 ILE GLU SER LEU LYS GLU ALA VAL THR ASP SER THR LYS SEQRES 11 B 390 ALA ILE LEU THR VAL ASN LEU LEU GLY ASN PRO ASN ASN SEQRES 12 B 390 PHE ASP GLU ILE ASN LYS ILE ILE GLY GLY ARG ASP ILE SEQRES 13 B 390 ILE LEU LEU GLU ASP ASN CYS GLU SER MET GLY ALA THR SEQRES 14 B 390 PHE ASN ASN LYS CYS ALA GLY THR PHE GLY LEU MET GLY SEQRES 15 B 390 THR PHE SER SER PHE TYR SER LYS HIS ILE ALA THR MET SEQRES 16 B 390 GLU GLY GLY CYS ILE VAL THR ASP ASP GLU GLU ILE TYR SEQRES 17 B 390 HIS ILE LEU LEU CYS ILE ARG ALA HIS GLY TRP THR ARG SEQRES 18 B 390 ASN LEU PRO LYS LYS ASN LYS VAL THR GLY VAL LYS SER SEQRES 19 B 390 ASP ASP GLN PHE GLU GLU SER PHE LYS PHE VAL LEU PRO SEQRES 20 B 390 GLY TYR ASN VAL ARG PRO LEU GLU MET SER GLY ALA ILE SEQRES 21 B 390 GLY ILE GLU GLN LEU LYS LYS LEU PRO ARG PHE ILE SER SEQRES 22 B 390 VAL ARG ARG LYS ASN ALA GLU TYR PHE LEU ASP LYS PHE SEQRES 23 B 390 LYS ASP HIS PRO TYR LEU ASP VAL GLN GLN GLU THR GLY SEQRES 24 B 390 GLU SER SER TRP PHE GLY PHE SER PHE ILE ILE LYS LYS SEQRES 25 B 390 ASP SER GLY VAL ILE ARG LYS GLN LEU VAL GLU ASN LEU SEQRES 26 B 390 ASN SER ALA GLY ILE GLU CYS ARG PRO ILE VAL THR GLY SEQRES 27 B 390 ASN PHE LEU LYS ASN THR ASP VAL LEU LYS TYR PHE ASP SEQRES 28 B 390 TYR THR VAL HIS ASN ASN VAL ASP ASN ALA GLU TYR LEU SEQRES 29 B 390 ASP LYS ASN GLY LEU PHE VAL GLY ASN HIS GLN ILE GLU SEQRES 30 B 390 LEU PHE ASP GLU ILE ASP TYR LEU ARG GLU VAL LEU LYS HET PGU A 500 25 HET PGU B 500 25 HETNAM PGU N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- HETNAM 2 PGU 4-YL}METHYL)-L-GLUTAMIC ACID FORMUL 3 PGU 2(C13 H19 N2 O9 P) FORMUL 5 HOH *258(H2 O) HELIX 1 1 ASP A 12 LYS A 26 1 15 HELIX 2 2 GLY A 31 GLY A 46 1 16 HELIX 3 3 SER A 55 LEU A 67 1 13 HELIX 4 4 TRP A 88 TYR A 98 1 11 HELIX 5 5 ASP A 115 VAL A 123 1 9 HELIX 6 6 ASN A 141 GLY A 150 1 10 HELIX 7 7 ASP A 202 ARG A 213 1 12 HELIX 8 8 ASP A 234 SER A 239 1 6 HELIX 9 9 LEU A 252 LYS A 285 1 34 HELIX 10 10 ILE A 315 ALA A 326 1 12 HELIX 11 11 ASN A 337 LYS A 340 5 4 HELIX 12 12 ASN A 341 LYS A 346 1 6 HELIX 13 13 VAL A 356 ASN A 365 1 10 HELIX 14 14 LEU A 376 LEU A 387 1 12 HELIX 15 15 ASP B 12 LYS B 26 1 15 HELIX 16 16 GLY B 31 GLY B 46 1 16 HELIX 17 17 SER B 55 LEU B 67 1 13 HELIX 18 18 TRP B 88 THR B 91 5 4 HELIX 19 19 TYR B 92 TYR B 98 1 7 HELIX 20 20 ASP B 115 VAL B 123 1 9 HELIX 21 21 LEU B 135 ASN B 138 5 4 HELIX 22 22 ASN B 141 GLY B 150 1 10 HELIX 23 23 ASP B 202 ARG B 213 1 12 HELIX 24 24 ASP B 234 SER B 239 1 6 HELIX 25 25 LEU B 252 LYS B 285 1 34 HELIX 26 26 ILE B 315 ALA B 326 1 12 HELIX 27 27 ASN B 337 LYS B 340 5 4 HELIX 28 28 ASN B 341 LYS B 346 1 6 HELIX 29 29 VAL B 356 ASN B 365 1 10 HELIX 30 30 LEU B 376 LEU B 387 1 12 SHEET 1 A 8 TYR A 49 VAL A 53 0 SHEET 2 A 8 GLY A 196 THR A 200 -1 O ILE A 198 N VAL A 51 SHEET 3 A 8 MET A 179 SER A 183 -1 N GLY A 180 O VAL A 199 SHEET 4 A 8 ILE A 155 ASP A 159 1 N GLU A 158 O THR A 181 SHEET 5 A 8 THR A 127 VAL A 133 1 N THR A 132 O ASP A 159 SHEET 6 A 8 GLU A 80 PRO A 84 1 N ILE A 82 O LEU A 131 SHEET 7 A 8 ARG A 101 VAL A 105 1 O LYS A 103 N ILE A 81 SHEET 8 A 8 ASP A 349 VAL A 352 1 O THR A 351 N VAL A 102 SHEET 1 B 2 THR A 167 PHE A 168 0 SHEET 2 B 2 LYS A 171 CYS A 172 -1 O LYS A 171 N PHE A 168 SHEET 1 C 3 LEU A 290 ASP A 291 0 SHEET 2 C 3 GLY A 303 ILE A 308 -1 O ILE A 307 N ASP A 291 SHEET 3 C 3 GLY A 366 GLY A 370 -1 O VAL A 369 N PHE A 304 SHEET 1 D 8 TYR B 49 VAL B 53 0 SHEET 2 D 8 GLY B 196 THR B 200 -1 O GLY B 196 N VAL B 53 SHEET 3 D 8 MET B 179 SER B 183 -1 N PHE B 182 O CYS B 197 SHEET 4 D 8 ILE B 155 ASP B 159 1 N GLU B 158 O THR B 181 SHEET 5 D 8 THR B 127 VAL B 133 1 N THR B 132 O LEU B 157 SHEET 6 D 8 GLU B 80 PRO B 84 1 N ILE B 82 O LEU B 131 SHEET 7 D 8 ARG B 101 VAL B 105 1 O LYS B 103 N ILE B 81 SHEET 8 D 8 ASP B 349 VAL B 352 1 O ASP B 349 N VAL B 102 SHEET 1 E 2 THR B 167 PHE B 168 0 SHEET 2 E 2 LYS B 171 CYS B 172 -1 O LYS B 171 N PHE B 168 SHEET 1 F 2 LYS B 224 ASN B 225 0 SHEET 2 F 2 GLY B 229 VAL B 230 -1 O GLY B 229 N ASN B 225 SHEET 1 G 3 LEU B 290 ASP B 291 0 SHEET 2 G 3 GLY B 303 ILE B 308 -1 O ILE B 307 N ASP B 291 SHEET 3 G 3 GLY B 366 GLY B 370 -1 O VAL B 369 N PHE B 304 LINK NZ LYS A 188 C4A PGU A 500 1555 1555 1.47 LINK NZ LYS B 188 C4A PGU B 500 1555 1555 1.47 SITE 1 AC1 16 GLY A 56 SER A 57 TRP A 88 ASP A 159 SITE 2 AC1 16 CYS A 161 GLU A 162 SER A 183 PHE A 185 SITE 3 AC1 16 LYS A 188 ARG A 331 HOH A 508 HOH A 516 SITE 4 AC1 16 HIS B 215 TRP B 217 ASN B 248 ARG B 250 SITE 1 AC2 16 HIS A 215 ASN A 248 ARG A 250 SER B 55 SITE 2 AC2 16 GLY B 56 SER B 57 TRP B 88 THR B 90 SITE 3 AC2 16 ASP B 159 CYS B 161 GLU B 162 SER B 183 SITE 4 AC2 16 PHE B 185 LYS B 188 ARG B 331 HOH B 622 CRYST1 69.908 72.905 86.959 90.00 107.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014305 0.000000 0.004631 0.00000 SCALE2 0.000000 0.013716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012087 0.00000