HEADER IMMUNE SYSTEM 21-AUG-07 2R0Z TITLE PFA1 FAB COMPLEXED WITH GRIPI PEPTIDE FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2A FAB FRAGMENT LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG2A FAB FRAGMENT HEAVY CHAIN, FD PORTION; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: FD PORTION OF HEAVY CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GRIPI PEPTIDE FRAGMENT; COMPND 11 CHAIN: Q; COMPND 12 FRAGMENT: HEXAPEPTIDE; COMPND 13 SYNONYM: GLUTAMATE RECEPTOR INTERACTING PROTEIN 1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 OTHER_DETAILS: HYBRIDOMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 OTHER_DETAILS: HYBRIDOMA; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS IMMUNOGLOBULIN; ALZHEIMER DISEASE; AMYLOID, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.S.GARDBERG,C.DEALWIS REVDAT 4 25-OCT-17 2R0Z 1 REMARK REVDAT 3 13-JUL-11 2R0Z 1 VERSN REVDAT 2 24-FEB-09 2R0Z 1 VERSN REVDAT 1 16-OCT-07 2R0Z 0 JRNL AUTH A.S.GARDBERG,L.T.DICE,S.OU,R.L.RICH,E.HELMBRECHT,J.KO, JRNL AUTH 2 R.WETZEL,D.G.MYSZKA,P.H.PATTERSON,C.DEALWIS JRNL TITL MOLECULAR BASIS FOR PASSIVE IMMUNOTHERAPY OF ALZHEIMER'S JRNL TITL 2 DISEASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 15659 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17895381 JRNL DOI 10.1073/PNAS.0705888104 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 19995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 907 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.58000 REMARK 3 B22 (A**2) : -3.01000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.236 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.867 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3489 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4753 ; 1.169 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;32.789 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;15.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;24.931 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2604 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1387 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2287 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2257 ; 0.421 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3572 ; 0.712 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1433 ; 1.035 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1179 ; 1.590 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 111 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8420 18.3830 20.1950 REMARK 3 T TENSOR REMARK 3 T11: -0.1073 T22: -0.0445 REMARK 3 T33: -0.0914 T12: 0.0393 REMARK 3 T13: -0.0426 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.3160 L22: 3.3577 REMARK 3 L33: 2.5055 L12: 0.6854 REMARK 3 L13: -1.0833 L23: -1.5001 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: 0.0220 S13: 0.1101 REMARK 3 S21: -0.1903 S22: 0.0970 S23: -0.1220 REMARK 3 S31: 0.1264 S32: 0.0753 S33: -0.0607 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 123 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3700 2.8610 33.4600 REMARK 3 T TENSOR REMARK 3 T11: -0.1330 T22: -0.1075 REMARK 3 T33: -0.0905 T12: 0.0032 REMARK 3 T13: -0.0675 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 1.5035 L22: 5.4485 REMARK 3 L33: 3.3997 L12: 0.0732 REMARK 3 L13: -0.1132 L23: 0.9751 REMARK 3 S TENSOR REMARK 3 S11: 0.1467 S12: 0.0265 S13: -0.1133 REMARK 3 S21: 0.5208 S22: 0.0255 S23: 0.0558 REMARK 3 S31: 0.3124 S32: -0.0587 S33: -0.1722 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 112 L 213 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4250 -9.2040 0.8580 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: -0.0977 REMARK 3 T33: -0.1741 T12: 0.0255 REMARK 3 T13: 0.0086 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.6981 L22: 6.4781 REMARK 3 L33: 2.0251 L12: 0.7160 REMARK 3 L13: 0.1513 L23: 1.4466 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.0403 S13: 0.0774 REMARK 3 S21: -0.3035 S22: -0.0954 S23: 0.1548 REMARK 3 S31: 0.1046 S32: -0.1012 S33: 0.0554 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 124 H 213 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1020 -15.7600 14.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: -0.0851 REMARK 3 T33: -0.1260 T12: 0.0099 REMARK 3 T13: -0.0681 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.3145 L22: 4.1613 REMARK 3 L33: 4.8394 L12: 1.0541 REMARK 3 L13: -1.8819 L23: -1.5632 REMARK 3 S TENSOR REMARK 3 S11: -0.1297 S12: 0.0311 S13: -0.0306 REMARK 3 S21: -0.0885 S22: -0.0444 S23: -0.2536 REMARK 3 S31: 0.0282 S32: 0.3016 S33: 0.1741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. KABAT NUMBERING SCHEME IMPOSED FOLLOWING REFINEMENT REMARK 4 REMARK 4 2R0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-06; 11-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : NULL; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; APS REMARK 200 BEAMLINE : NULL; 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : RIGAKU; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178; 0.90 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20023 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.096 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.12150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 129 REMARK 465 ASP H 130 REMARK 465 THR H 131 REMARK 465 THR H 132 REMARK 465 GLY H 133 REMARK 465 SER H 158 REMARK 465 SER H 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 LYS H 43 CD CE NZ REMARK 470 THR H 73 OG1 CG2 REMARK 470 SER H 74 OG REMARK 470 ASP H 173 CG OD1 OD2 REMARK 470 SER H 185 OG REMARK 470 SER H 186 OG REMARK 470 GLN H 191 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 51 -50.98 78.51 REMARK 500 SER H 15 -12.22 88.77 REMARK 500 SER H 82B 69.13 37.16 REMARK 500 TRP H 100D 166.51 170.83 REMARK 500 SER H 190 -56.75 -23.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IPT RELATED DB: PDB REMARK 900 RELATED ID: 2IPU RELATED DB: PDB REMARK 900 RELATED ID: 2IQA RELATED DB: PDB REMARK 900 RELATED ID: 2IQ9 RELATED DB: PDB REMARK 900 RELATED ID: 2R0W RELATED DB: PDB DBREF 2R0Z L 1 213 UNP A2NHM3 A2NHM3_MOUSE 1 219 DBREF 2R0Z H 1 213 PDB 2R0Z 2R0Z 1 213 DBREF 2R0Z Q 2 7 PDB 2R0Z 2R0Z 2 7 SEQADV 2R0Z SER L 27E UNP A2NHM3 THR 32 CONFLICT SEQADV 2R0Z LEU L 96 UNP A2NHM3 ARG 101 CONFLICT SEQADV 2R0Z ALA L 100 UNP A2NHM3 GLY 105 CONFLICT SEQADV 2R0Z LEU L 106 UNP A2NHM3 ILE 111 CONFLICT SEQADV 2R0Z YCM L 213 UNP A2NHM3 CYS 219 MODIFIED RESIDUE SEQRES 1 L 219 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER ILE VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS VAL PRO LEU THR PHE GLY SEQRES 9 L 219 ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU YCM SEQRES 1 H 223 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU LYS SEQRES 2 H 223 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 H 223 PHE SER LEU SER THR SER GLY MET GLY VAL GLY TRP ILE SEQRES 4 H 223 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 H 223 ILE TRP TRP ASP ASP ASP ARG SER TYR ASN PRO SER LEU SEQRES 6 H 223 LYS SER GLN LEU THR ILE SER LYS ASP THR SER ARG ASN SEQRES 7 H 223 GLN VAL PHE LEU ARG ILE THR SER VAL ASP THR ALA ASP SEQRES 8 H 223 THR ALA THR TYR TYR CYS VAL ARG ARG ALA HIS THR THR SEQRES 9 H 223 VAL LEU GLY ASP TRP PHE ALA TYR TRP GLY GLN GLY THR SEQRES 10 H 223 LEU VAL THR VAL SER ALA ALA LYS THR THR ALA PRO SER SEQRES 11 H 223 VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR THR GLY SEQRES 12 H 223 SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 H 223 PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SER LEU SEQRES 14 H 223 SER SER GLY VAL HIS THR PHE PRO ALA LEU LEU GLN SER SEQRES 15 H 223 ASP LEU TYR THR LEU SER SER SER SER THR VAL THR SER SEQRES 16 H 223 SER THR TRP PRO SER GLN SER ILE THR CYS ASN VAL ALA SEQRES 17 H 223 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE GLU SEQRES 18 H 223 PRO ARG SEQRES 1 Q 6 ALA LYS PHE ARG HIS ASP MODRES 2R0Z YCM L 213 CYS S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HET YCM L 213 11 HET GOL L 214 6 HET GOL L 215 6 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM GOL GLYCEROL HETSYN YCM CYSTEINE-S-ACETAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 YCM C5 H10 N2 O3 S FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *113(H2 O) HELIX 1 1 GLU L 79 LEU L 83 5 5 HELIX 2 2 SER L 120 SER L 126 1 7 HELIX 3 3 LYS L 182 GLU L 186 1 5 HELIX 4 4 ASN L 211 YCM L 213 5 3 HELIX 5 5 PRO H 61 LYS H 64 5 4 HELIX 6 6 ASP H 83 THR H 87 5 5 HELIX 7 7 SER H 186 TRP H 188 5 3 HELIX 8 8 PRO H 200 SER H 203 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O SER L 22 N THR L 7 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 B 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 C 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 THR L 113 PHE L 117 0 SHEET 2 D 4 GLY L 128 PHE L 138 -1 O VAL L 132 N PHE L 117 SHEET 3 D 4 TYR L 172 THR L 181 -1 O LEU L 180 N ALA L 129 SHEET 4 D 4 VAL L 158 TRP L 162 -1 N SER L 161 O SER L 175 SHEET 1 E 4 SER L 152 ARG L 154 0 SHEET 2 E 4 ILE L 143 ILE L 149 -1 N ILE L 149 O SER L 152 SHEET 3 E 4 SER L 190 HIS L 197 -1 O GLU L 194 N LYS L 146 SHEET 4 E 4 ILE L 204 ASN L 209 -1 O ILE L 204 N ALA L 195 SHEET 1 F 4 THR H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 23 N LYS H 5 SHEET 3 F 4 GLN H 77 ILE H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 F 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 G 6 ILE H 11 LEU H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N LEU H 12 SHEET 3 G 6 ALA H 88 ALA H 96 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 MET H 34 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 G 6 GLU H 46 TRP H 52 -1 O ILE H 51 N VAL H 35A SHEET 6 G 6 ARG H 57 TYR H 59 -1 O SER H 58 N HIS H 50 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 SER H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 H 4 TYR H 175 THR H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 H 4 GLY H 162 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 SER H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 I 4 TYR H 175 THR H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 I 4 LEU H 169 LEU H 170 -1 N LEU H 169 O THR H 176 SHEET 1 J 3 THR H 151 ASN H 155 0 SHEET 2 J 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 J 3 THR H 204 LYS H 209 -1 O LYS H 208 N CYS H 195 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 2 CYS L 133 CYS L 193 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.02 SSBOND 4 CYS H 140 CYS H 195 1555 1555 2.04 LINK C GLU L 212 N YCM L 213 1555 1555 1.33 CISPEP 1 THR L 7 PRO L 8 0 -5.65 CISPEP 2 VAL L 94 PRO L 95 0 4.74 CISPEP 3 TYR L 139 PRO L 140 0 2.53 CISPEP 4 PHE H 146 PRO H 147 0 -9.12 CISPEP 5 GLU H 148 PRO H 149 0 4.57 CISPEP 6 TRP H 188 PRO H 189 0 6.11 SITE 1 AC1 7 THR H 176 SER H 178 LEU L 159 SER L 161 SITE 2 AC1 7 SER L 175 SER L 176 THR L 177 SITE 1 AC2 4 GLY L 57 GLU L 81 ASP L 82 HOH L 223 CRYST1 41.467 112.243 43.174 90.00 93.43 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024116 0.000000 0.001445 0.00000 SCALE2 0.000000 0.008909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023204 0.00000