data_2R22 # _entry.id 2R22 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2R22 pdb_00002r22 10.2210/pdb2r22/pdb NDB AR0084 ? ? RCSB RCSB044327 ? ? WWPDB D_1000044327 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.value' 24 3 'Structure model' '_struct_conn.pdbx_dist_value' 25 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.entry_id 2R22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-08-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2R1S 'brominated tridecamer r(GCGUU-BrU-GAAACGC), 3mM MnCl2, 2 mM MgCl2, resolution 1.4 A' unspecified PDB 2R20 'brominated tridecamer r(GCGUU-BrU-GAAACGC), 5mM MnCl2, 5mM MgCl2, resolution 1.3 A' unspecified PDB 2R21 'brominated tridecamer r(GCGUU-BrU-GAAACGC), 0.5 mM MnCl2, resolution 1.6 A' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Timsit, Y.' 1 'Bombard, S.' 2 # _citation.id primary _citation.title 'The 1.3 A structure of the tridecamer r(GCGUUUGAAACGC)' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Timsit, Y.' 1 ? primary 'Bombard, S.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*GP*UP*UP*UP*GP*AP*AP*AP*CP*GP*C)-3') ; 4157.525 2 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 4 water nat water 18.015 145 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGUUUGAAACGC _entity_poly.pdbx_seq_one_letter_code_can GCGUUUGAAACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'MANGANESE (II) ION' MN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 U n 1 5 U n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 A n 1 11 C n 1 12 G n 1 13 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n B 1 1 G 1 14 14 G G B . n B 1 2 C 2 15 15 C C B . n B 1 3 G 3 16 16 G G B . n B 1 4 U 4 17 17 U U B . n B 1 5 U 5 18 18 U U B . n B 1 6 U 6 19 19 U U B . n B 1 7 G 7 20 20 G G B . n B 1 8 A 8 21 21 A A B . n B 1 9 A 9 22 22 A A B . n B 1 10 A 10 23 23 A A B . n B 1 11 C 11 24 24 C C B . n B 1 12 G 12 25 25 G G B . n B 1 13 C 13 26 26 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 14 2 NA NA A . D 2 NA 1 15 3 NA NA A . E 2 NA 1 16 5 NA NA A . F 3 MN 1 17 6 MN MN A . G 2 NA 1 1 1 NA NA B . H 4 HOH 1 18 1 HOH HOH A . H 4 HOH 2 19 2 HOH HOH A . H 4 HOH 3 20 7 HOH HOH A . H 4 HOH 4 21 8 HOH HOH A . H 4 HOH 5 22 9 HOH HOH A . H 4 HOH 6 23 10 HOH HOH A . H 4 HOH 7 24 12 HOH HOH A . H 4 HOH 8 25 13 HOH HOH A . H 4 HOH 9 26 14 HOH HOH A . H 4 HOH 10 27 16 HOH HOH A . H 4 HOH 11 28 18 HOH HOH A . H 4 HOH 12 29 21 HOH HOH A . H 4 HOH 13 30 26 HOH HOH A . H 4 HOH 14 31 31 HOH HOH A . H 4 HOH 15 32 33 HOH HOH A . H 4 HOH 16 33 37 HOH HOH A . H 4 HOH 17 34 38 HOH HOH A . H 4 HOH 18 35 39 HOH HOH A . H 4 HOH 19 36 40 HOH HOH A . H 4 HOH 20 37 45 HOH HOH A . H 4 HOH 21 38 46 HOH HOH A . H 4 HOH 22 39 49 HOH HOH A . H 4 HOH 23 40 52 HOH HOH A . H 4 HOH 24 41 55 HOH HOH A . H 4 HOH 25 42 57 HOH HOH A . H 4 HOH 26 43 59 HOH HOH A . H 4 HOH 27 44 61 HOH HOH A . H 4 HOH 28 45 64 HOH HOH A . H 4 HOH 29 46 73 HOH HOH A . H 4 HOH 30 47 76 HOH HOH A . H 4 HOH 31 48 77 HOH HOH A . H 4 HOH 32 49 78 HOH HOH A . H 4 HOH 33 50 85 HOH HOH A . H 4 HOH 34 51 88 HOH HOH A . H 4 HOH 35 52 89 HOH HOH A . H 4 HOH 36 53 91 HOH HOH A . H 4 HOH 37 54 96 HOH HOH A . H 4 HOH 38 55 97 HOH HOH A . H 4 HOH 39 56 98 HOH HOH A . H 4 HOH 40 57 100 HOH HOH A . H 4 HOH 41 58 102 HOH HOH A . H 4 HOH 42 59 103 HOH HOH A . H 4 HOH 43 60 105 HOH HOH A . H 4 HOH 44 61 111 HOH HOH A . H 4 HOH 45 62 116 HOH HOH A . H 4 HOH 46 63 117 HOH HOH A . H 4 HOH 47 64 118 HOH HOH A . H 4 HOH 48 65 119 HOH HOH A . H 4 HOH 49 66 126 HOH HOH A . H 4 HOH 50 67 130 HOH HOH A . H 4 HOH 51 68 131 HOH HOH A . H 4 HOH 52 69 132 HOH HOH A . H 4 HOH 53 70 134 HOH HOH A . H 4 HOH 54 71 138 HOH HOH A . H 4 HOH 55 72 140 HOH HOH A . H 4 HOH 56 73 146 HOH HOH A . H 4 HOH 57 74 154 HOH HOH A . H 4 HOH 58 75 155 HOH HOH A . H 4 HOH 59 76 156 HOH HOH A . H 4 HOH 60 77 167 HOH HOH A . H 4 HOH 61 78 168 HOH HOH A . H 4 HOH 62 79 170 HOH HOH A . H 4 HOH 63 80 172 HOH HOH A . H 4 HOH 64 81 173 HOH HOH A . H 4 HOH 65 82 184 HOH HOH A . H 4 HOH 66 83 189 HOH HOH A . H 4 HOH 67 84 190 HOH HOH A . H 4 HOH 68 85 191 HOH HOH A . I 4 HOH 1 27 3 HOH HOH B . I 4 HOH 2 28 11 HOH HOH B . I 4 HOH 3 29 15 HOH HOH B . I 4 HOH 4 30 17 HOH HOH B . I 4 HOH 5 31 19 HOH HOH B . I 4 HOH 6 32 20 HOH HOH B . I 4 HOH 7 33 22 HOH HOH B . I 4 HOH 8 34 23 HOH HOH B . I 4 HOH 9 35 25 HOH HOH B . I 4 HOH 10 36 27 HOH HOH B . I 4 HOH 11 37 28 HOH HOH B . I 4 HOH 12 38 29 HOH HOH B . I 4 HOH 13 39 30 HOH HOH B . I 4 HOH 14 40 32 HOH HOH B . I 4 HOH 15 41 35 HOH HOH B . I 4 HOH 16 42 36 HOH HOH B . I 4 HOH 17 43 41 HOH HOH B . I 4 HOH 18 44 42 HOH HOH B . I 4 HOH 19 45 43 HOH HOH B . I 4 HOH 20 46 44 HOH HOH B . I 4 HOH 21 47 47 HOH HOH B . I 4 HOH 22 48 48 HOH HOH B . I 4 HOH 23 49 50 HOH HOH B . I 4 HOH 24 50 53 HOH HOH B . I 4 HOH 25 51 54 HOH HOH B . I 4 HOH 26 52 56 HOH HOH B . I 4 HOH 27 53 58 HOH HOH B . I 4 HOH 28 54 62 HOH HOH B . I 4 HOH 29 55 63 HOH HOH B . I 4 HOH 30 56 65 HOH HOH B . I 4 HOH 31 57 66 HOH HOH B . I 4 HOH 32 58 68 HOH HOH B . I 4 HOH 33 59 70 HOH HOH B . I 4 HOH 34 60 74 HOH HOH B . I 4 HOH 35 61 75 HOH HOH B . I 4 HOH 36 62 79 HOH HOH B . I 4 HOH 37 63 81 HOH HOH B . I 4 HOH 38 64 82 HOH HOH B . I 4 HOH 39 65 83 HOH HOH B . I 4 HOH 40 66 84 HOH HOH B . I 4 HOH 41 67 90 HOH HOH B . I 4 HOH 42 68 92 HOH HOH B . I 4 HOH 43 69 95 HOH HOH B . I 4 HOH 44 70 99 HOH HOH B . I 4 HOH 45 71 101 HOH HOH B . I 4 HOH 46 72 104 HOH HOH B . I 4 HOH 47 73 107 HOH HOH B . I 4 HOH 48 74 108 HOH HOH B . I 4 HOH 49 75 109 HOH HOH B . I 4 HOH 50 76 110 HOH HOH B . I 4 HOH 51 77 112 HOH HOH B . I 4 HOH 52 78 114 HOH HOH B . I 4 HOH 53 79 115 HOH HOH B . I 4 HOH 54 80 120 HOH HOH B . I 4 HOH 55 81 122 HOH HOH B . I 4 HOH 56 82 123 HOH HOH B . I 4 HOH 57 83 125 HOH HOH B . I 4 HOH 58 84 129 HOH HOH B . I 4 HOH 59 85 137 HOH HOH B . I 4 HOH 60 86 139 HOH HOH B . I 4 HOH 61 87 142 HOH HOH B . I 4 HOH 62 88 151 HOH HOH B . I 4 HOH 63 89 152 HOH HOH B . I 4 HOH 64 90 153 HOH HOH B . I 4 HOH 65 91 160 HOH HOH B . I 4 HOH 66 92 161 HOH HOH B . I 4 HOH 67 93 162 HOH HOH B . I 4 HOH 68 94 163 HOH HOH B . I 4 HOH 69 95 165 HOH HOH B . I 4 HOH 70 96 169 HOH HOH B . I 4 HOH 71 97 178 HOH HOH B . I 4 HOH 72 98 179 HOH HOH B . I 4 HOH 73 99 180 HOH HOH B . I 4 HOH 74 100 185 HOH HOH B . I 4 HOH 75 101 186 HOH HOH B . I 4 HOH 76 102 187 HOH HOH B . I 4 HOH 77 103 188 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 1 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? 6 # _cell.entry_id 2R22 _cell.length_a 25.280 _cell.length_b 25.500 _cell.length_c 29.600 _cell.angle_alpha 97.97 _cell.angle_beta 106.69 _cell.angle_gamma 101.62 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2R22 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2R22 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '3 mM MnCl2, 100 mM NaCl, 50 mM Tris, 30 % MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 Tris ? ? ? 1 4 1 MnCl2 ? ? ? 1 5 2 MPD ? ? ? 1 6 2 NaCl ? ? ? 1 7 2 Tris ? ? ? 1 8 2 MnCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2003-02-03 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si (111) Crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.919487 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.919487 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A # _reflns.entry_id 2R22 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.4 _reflns.d_resolution_low 20 _reflns.number_all 12814 _reflns.number_obs 12814 _reflns.percent_possible_obs 88.7 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_Rsym_value 6.4 _reflns.pdbx_netI_over_sigmaI 7.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.4 _reflns_shell.d_res_low 1.53 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 92 _reflns_shell.Rmerge_I_obs 0.279 _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_Rsym_value 19.7 _reflns_shell.pdbx_redundancy 1.1 _reflns_shell.number_unique_all 1838 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2R22 _refine.ls_d_res_high 1.400 _refine.ls_d_res_low 20 _refine.pdbx_ls_sigma_F 104.00 _refine.ls_percent_reflns_obs 63.300 _refine.ls_number_reflns_obs 12814 _refine.ls_R_factor_R_work 0.178 _refine.ls_R_factor_R_free 0.200 _refine.ls_percent_reflns_R_free 5.500 _refine.ls_number_reflns_R_free 1457 _refine.B_iso_mean 13.727 _refine.solvent_model_param_bsol 40.159 _refine.aniso_B[1][1] -4.257 _refine.aniso_B[2][2] 3.193 _refine.aniso_B[3][3] 1.064 _refine.aniso_B[1][2] -1.789 _refine.aniso_B[1][3] -2.954 _refine.aniso_B[2][3] 0.929 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 550 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 145 _refine_hist.number_atoms_total 700 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_d 0.89166 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.003646 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 dna-rna_rep.param ? 'X-RAY DIFFRACTION' 2 ion.param ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2R22 _struct.title 'Structure of the native RNA tridecamer r(GCGUUUGAAACGC) at 1.5 A (NatMn)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2R22 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'monovalent, electrostatic, asymmetry, manganese, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2R22 _struct_ref.pdbx_db_accession 2R22 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2R22 A 1 ? 13 ? 2R22 1 ? 13 ? 1 13 2 1 2R22 B 1 ? 13 ? 2R22 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 1850 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 4 O4 ? ? ? 1_555 C NA . NA ? ? A U 4 A NA 14 1_555 ? ? ? ? ? ? ? 2.629 ? ? metalc2 metalc ? ? A U 5 O4 ? ? ? 1_555 C NA . NA ? ? A U 5 A NA 14 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc3 metalc ? ? A G 7 N7 ? ? ? 1_555 D NA . NA ? ? A G 7 A NA 15 1_555 ? ? ? ? ? ? ? 2.513 ? ? metalc4 metalc ? ? A A 9 N7 ? ? ? 1_555 E NA . NA ? ? A A 9 A NA 16 1_555 ? ? ? ? ? ? ? 2.751 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 14 A HOH 37 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 14 A HOH 48 1_555 ? ? ? ? ? ? ? 2.389 ? ? metalc7 metalc ? ? C NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 14 A HOH 51 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc8 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 14 B HOH 69 1_555 ? ? ? ? ? ? ? 2.941 ? ? metalc9 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 15 A HOH 31 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc10 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 15 A HOH 55 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc11 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 15 A HOH 65 1_555 ? ? ? ? ? ? ? 2.464 ? ? metalc12 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 15 A HOH 67 1_555 ? ? ? ? ? ? ? 2.550 ? ? metalc13 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 15 A HOH 83 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc14 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 16 A HOH 50 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc15 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 16 A HOH 64 1_555 ? ? ? ? ? ? ? 2.708 ? ? metalc16 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 16 A HOH 73 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc17 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 16 A HOH 75 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc18 metalc ? ? F MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 17 A HOH 23 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc19 metalc ? ? F MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 17 A HOH 30 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc20 metalc ? ? F MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 17 A HOH 59 1_555 ? ? ? ? ? ? ? 1.951 ? ? metalc21 metalc ? ? G NA . NA ? ? ? 1_555 B U 4 O4 ? ? B NA 1 B U 17 1_555 ? ? ? ? ? ? ? 2.524 ? ? metalc22 metalc ? ? G NA . NA ? ? ? 1_555 B U 5 O4 ? ? B NA 1 B U 18 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc23 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 1 B HOH 42 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc24 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 1 B HOH 61 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc25 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 1 B HOH 62 1_555 ? ? ? ? ? ? ? 2.459 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 1 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 1 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 1 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 2 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 2 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 2 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 3 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 3 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 3 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 4 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 4 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 5 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 5 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 8 N1 ? ? A U 6 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 8 N6 ? ? A U 6 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B G 7 O6 ? ? A G 7 B G 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B G 7 N7 ? ? A G 7 B G 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 8 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 8 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 5 N3 ? ? A A 9 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 5 O4 ? ? A A 9 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 10 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 10 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 12 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 12 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 12 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 13 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 13 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 13 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 4 ? A U 4 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O4 ? A U 5 ? A U 5 ? 1_555 73.0 ? 2 O4 ? A U 4 ? A U 4 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 37 ? 1_555 141.1 ? 3 O4 ? A U 5 ? A U 5 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 37 ? 1_555 75.2 ? 4 O4 ? A U 4 ? A U 4 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 48 ? 1_555 96.2 ? 5 O4 ? A U 5 ? A U 5 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 48 ? 1_555 155.0 ? 6 O ? H HOH . ? A HOH 37 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 48 ? 1_555 121.6 ? 7 O4 ? A U 4 ? A U 4 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 51 ? 1_555 109.1 ? 8 O4 ? A U 5 ? A U 5 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 51 ? 1_555 87.1 ? 9 O ? H HOH . ? A HOH 37 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 51 ? 1_555 91.1 ? 10 O ? H HOH . ? A HOH 48 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? H HOH . ? A HOH 51 ? 1_555 75.1 ? 11 O4 ? A U 4 ? A U 4 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? I HOH . ? B HOH 69 ? 1_555 75.8 ? 12 O4 ? A U 5 ? A U 5 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? I HOH . ? B HOH 69 ? 1_555 100.1 ? 13 O ? H HOH . ? A HOH 37 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? I HOH . ? B HOH 69 ? 1_555 88.3 ? 14 O ? H HOH . ? A HOH 48 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? I HOH . ? B HOH 69 ? 1_555 98.8 ? 15 O ? H HOH . ? A HOH 51 ? 1_555 NA ? C NA . ? A NA 14 ? 1_555 O ? I HOH . ? B HOH 69 ? 1_555 172.4 ? 16 N7 ? A G 7 ? A G 7 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 31 ? 1_555 99.8 ? 17 N7 ? A G 7 ? A G 7 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 55 ? 1_555 88.9 ? 18 O ? H HOH . ? A HOH 31 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 55 ? 1_555 166.0 ? 19 N7 ? A G 7 ? A G 7 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 65 ? 1_555 98.7 ? 20 O ? H HOH . ? A HOH 31 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 65 ? 1_555 84.5 ? 21 O ? H HOH . ? A HOH 55 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 65 ? 1_555 83.4 ? 22 N7 ? A G 7 ? A G 7 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 67 ? 1_555 171.1 ? 23 O ? H HOH . ? A HOH 31 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 67 ? 1_555 88.8 ? 24 O ? H HOH . ? A HOH 55 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 67 ? 1_555 83.1 ? 25 O ? H HOH . ? A HOH 65 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 67 ? 1_555 84.1 ? 26 N7 ? A G 7 ? A G 7 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 84.1 ? 27 O ? H HOH . ? A HOH 31 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 93.5 ? 28 O ? H HOH . ? A HOH 55 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 98.4 ? 29 O ? H HOH . ? A HOH 65 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 176.7 ? 30 O ? H HOH . ? A HOH 67 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 93.3 ? 31 N7 ? A A 9 ? A A 9 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 50 ? 1_555 93.4 ? 32 N7 ? A A 9 ? A A 9 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 64 ? 1_555 93.0 ? 33 O ? H HOH . ? A HOH 50 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 64 ? 1_555 82.4 ? 34 N7 ? A A 9 ? A A 9 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 73 ? 1_555 82.2 ? 35 O ? H HOH . ? A HOH 50 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 73 ? 1_555 168.1 ? 36 O ? H HOH . ? A HOH 64 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 73 ? 1_555 86.8 ? 37 N7 ? A A 9 ? A A 9 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 75 ? 1_555 167.5 ? 38 O ? H HOH . ? A HOH 50 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 75 ? 1_555 92.2 ? 39 O ? H HOH . ? A HOH 64 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 75 ? 1_555 76.7 ? 40 O ? H HOH . ? A HOH 73 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? H HOH . ? A HOH 75 ? 1_555 90.1 ? 41 O ? H HOH . ? A HOH 23 ? 1_555 MN ? F MN . ? A MN 17 ? 1_555 O ? H HOH . ? A HOH 30 ? 1_555 86.4 ? 42 O ? H HOH . ? A HOH 23 ? 1_555 MN ? F MN . ? A MN 17 ? 1_555 O ? H HOH . ? A HOH 59 ? 1_555 93.5 ? 43 O ? H HOH . ? A HOH 30 ? 1_555 MN ? F MN . ? A MN 17 ? 1_555 O ? H HOH . ? A HOH 59 ? 1_555 170.0 ? 44 O4 ? B U 4 ? B U 17 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O4 ? B U 5 ? B U 18 ? 1_555 81.9 ? 45 O4 ? B U 4 ? B U 17 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 42 ? 1_555 153.8 ? 46 O4 ? B U 5 ? B U 18 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 42 ? 1_555 76.3 ? 47 O4 ? B U 4 ? B U 17 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 61 ? 1_555 100.3 ? 48 O4 ? B U 5 ? B U 18 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 61 ? 1_555 165.3 ? 49 O ? I HOH . ? B HOH 42 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 61 ? 1_555 104.4 ? 50 O4 ? B U 4 ? B U 17 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 62 ? 1_555 101.9 ? 51 O4 ? B U 5 ? B U 18 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 62 ? 1_555 85.5 ? 52 O ? I HOH . ? B HOH 42 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 62 ? 1_555 90.7 ? 53 O ? I HOH . ? B HOH 61 ? 1_555 NA ? G NA . ? B NA 1 ? 1_555 O ? I HOH . ? B HOH 62 ? 1_555 79.8 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MN MN MN N N 114 NA NA NA N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2R22 'double helix' 2R22 'a-form double helix' 2R22 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 13 1_555 -0.243 -0.059 0.057 -4.365 -8.135 0.632 1 A_G1:C26_B A 1 ? B 26 ? 19 1 1 A C 2 1_555 B G 12 1_555 0.141 -0.220 0.112 0.996 -15.762 0.573 2 A_C2:G25_B A 2 ? B 25 ? 19 1 1 A G 3 1_555 B C 11 1_555 -0.202 -0.192 0.029 -7.557 -16.598 -2.633 3 A_G3:C24_B A 3 ? B 24 ? 19 1 1 A U 4 1_555 B A 10 1_555 0.136 -0.083 0.195 -2.373 -7.135 2.516 4 A_U4:A23_B A 4 ? B 23 ? 20 1 1 A U 5 1_555 B A 9 1_555 -0.002 -0.093 0.080 8.306 -10.922 8.223 5 A_U5:A22_B A 5 ? B 22 ? 20 1 1 A U 6 1_555 B A 8 1_555 -0.207 -0.093 0.020 -1.688 -8.512 0.176 6 A_U6:A21_B A 6 ? B 21 ? 20 1 1 A G 7 1_555 B G 7 1_555 1.622 3.531 0.189 -8.775 3.963 -87.981 7 A_G7:G20_B A 7 ? B 20 ? 6 ? 1 A A 8 1_555 B U 6 1_555 0.094 -0.001 0.119 6.441 1.685 -2.519 8 A_A8:U19_B A 8 ? B 19 ? 20 1 1 A A 9 1_555 B U 5 1_555 -0.087 -0.112 0.047 1.871 -15.788 5.588 9 A_A9:U18_B A 9 ? B 18 ? 20 1 1 A A 10 1_555 B U 4 1_555 -0.158 -0.126 -0.030 -1.138 -8.659 3.855 10 A_A10:U17_B A 10 ? B 17 ? 20 1 1 A C 11 1_555 B G 3 1_555 0.434 -0.198 0.088 -0.751 -9.384 -0.638 11 A_C11:G16_B A 11 ? B 16 ? 19 1 1 A G 12 1_555 B C 2 1_555 -0.108 -0.107 0.126 -0.729 -6.578 0.613 12 A_G12:C15_B A 12 ? B 15 ? 19 1 1 A C 13 1_555 B G 1 1_555 0.212 -0.084 0.076 1.206 -3.229 1.113 13 A_C13:G14_B A 13 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 13 1_555 A C 2 1_555 B G 12 1_555 -0.541 -1.509 3.168 -2.447 1.686 34.154 -2.815 0.548 3.122 2.864 4.156 34.279 1 AA_G1C2:G25C26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A C 2 1_555 B G 12 1_555 A G 3 1_555 B C 11 1_555 -0.115 -1.686 3.355 1.399 14.221 30.490 -5.052 0.409 2.351 25.365 -2.495 33.601 2 AA_C2G3:C24G25_BB A 2 ? B 25 ? A 3 ? B 24 ? 1 A G 3 1_555 B C 11 1_555 A U 4 1_555 B A 10 1_555 0.822 -1.628 3.185 1.038 4.960 29.517 -4.114 -1.390 2.905 9.646 -2.018 29.939 3 AA_G3U4:A23C24_BB A 3 ? B 24 ? A 4 ? B 23 ? 1 A U 4 1_555 B A 10 1_555 A U 5 1_555 B A 9 1_555 0.699 -1.519 3.054 0.790 2.951 29.273 -3.567 -1.222 2.908 5.819 -1.558 29.429 4 AA_U4U5:A22A23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A U 5 1_555 B A 9 1_555 A U 6 1_555 B A 8 1_555 -0.943 -1.931 3.384 -1.831 12.438 32.673 -4.981 1.310 2.550 21.159 3.115 34.947 5 AA_U5U6:A21A22_BB A 5 ? B 22 ? A 6 ? B 21 ? 1 A U 6 1_555 B A 8 1_555 A G 7 1_555 B G 7 1_555 0.961 -3.323 3.071 6.507 5.290 80.608 -2.685 -0.585 2.944 4.079 -5.018 80.969 6 AA_U6G7:G20A21_BB A 6 ? B 21 ? A 7 ? B 20 ? 1 A G 7 1_555 B G 7 1_555 A A 8 1_555 B U 6 1_555 -1.349 0.388 3.044 0.437 2.406 -25.376 -1.519 -2.941 3.017 -5.460 0.992 -25.491 7 AA_G7A8:U19G20_BB A 7 ? B 20 ? A 8 ? B 19 ? 1 A A 8 1_555 B U 6 1_555 A A 9 1_555 B U 5 1_555 0.867 -1.981 3.372 0.624 8.653 30.436 -5.161 -1.482 2.736 16.077 -1.159 31.620 8 AA_A8A9:U18U19_BB A 8 ? B 19 ? A 9 ? B 18 ? 1 A A 9 1_555 B U 5 1_555 A A 10 1_555 B U 4 1_555 -1.027 -1.798 3.248 -3.943 9.273 32.968 -4.393 1.159 2.758 15.884 6.755 34.433 9 AA_A9A10:U17U18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A A 10 1_555 B U 4 1_555 A C 11 1_555 B G 3 1_555 -0.306 -1.604 3.269 -0.305 7.005 31.803 -4.021 0.495 2.863 12.593 0.548 32.548 10 AA_A10C11:G16U17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A C 11 1_555 B G 3 1_555 A G 12 1_555 B C 2 1_555 0.635 -1.816 3.128 1.429 7.209 29.256 -4.809 -0.959 2.642 13.996 -2.775 30.145 11 AA_C11G12:C15G16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A G 12 1_555 B C 2 1_555 A C 13 1_555 B G 1 1_555 0.273 -2.088 3.286 1.219 -0.285 32.361 -3.693 -0.273 3.312 -0.511 -2.186 32.384 12 AA_G12C13:G14C15_BB A 12 ? B 15 ? A 13 ? B 14 ? # _atom_sites.entry_id 2R22 _atom_sites.fract_transf_matrix[1][1] 0.039557 _atom_sites.fract_transf_matrix[1][2] 0.008134 _atom_sites.fract_transf_matrix[1][3] 0.013871 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.040036 _atom_sites.fract_transf_matrix[2][3] 0.008575 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036070 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N NA O P # loop_