HEADER MEMBRANE PROTEIN 24-AUG-07 2R2C TITLE CRYSTAL STRUCTURE OF A DOMAIN OF THE OUTER MEMBRANE LIPOPROTEIN OMP28 TITLE 2 FROM PORPHYROMONAS GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 28 KDA OUTER MEMBRANE PROTEIN OMP28; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN: RESIDUES 108-290; COMPND 5 SYNONYM: OUTER MEMBRANE LIPOPROTEIN OMP28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83; SOURCE 5 ATCC: BAA-308; SOURCE 6 GENE: OMP28, PG_2173; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS LIPOPROTEIN, OMP28, STRUCTURAL GENOMICS, PSI, MCSG, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,C.HATZOS,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2R2C 1 VERSN REVDAT 2 24-FEB-09 2R2C 1 VERSN REVDAT 1 25-SEP-07 2R2C 0 JRNL AUTH R.ZHANG,C.HATZOS,S.MOY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A DOMAIN OF THE OUTER MEMBRANE JRNL TITL 2 LIPOPROTEIN OMP28 FROM PORPHYROMONAS GINGIVALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 34354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.734 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1885 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2560 ; 1.386 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 5.930 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;36.310 ;25.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 321 ;13.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;12.675 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1390 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 886 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1301 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 279 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 1.208 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1859 ; 1.859 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 830 ; 2.677 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 701 ; 4.228 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 45 REMARK 3 RESIDUE RANGE : A 53 A 96 REMARK 3 RESIDUE RANGE : A 114 A 150 REMARK 3 RESIDUE RANGE : A 151 A 180 REMARK 3 RESIDUE RANGE : B 53 B 95 REMARK 3 RESIDUE RANGE : B 115 B 150 REMARK 3 RESIDUE RANGE : B 151 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2080 19.5220 35.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: -0.0192 REMARK 3 T33: -0.0729 T12: -0.0020 REMARK 3 T13: -0.0015 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.4295 L22: 0.9222 REMARK 3 L33: 0.7512 L12: 0.4078 REMARK 3 L13: -0.3693 L23: -0.7738 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0398 S13: 0.0143 REMARK 3 S21: -0.0381 S22: 0.0520 S23: 0.0251 REMARK 3 S31: 0.0594 S32: -0.0065 S33: -0.0315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB044337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34354 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 63.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.36500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.36500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.91550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.17100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.91550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.17100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.36500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.91550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.17100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.36500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.91550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.17100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THIS PROTEIN EXISTS AS DIMER. THE REMARK 300 DEPOSITED MOL.A AND MOL.B REPRESENT THE DIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 7 REMARK 465 TYR A 8 REMARK 465 TYR A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 PHE A 12 REMARK 465 ALA A 13 REMARK 465 ASN A 14 REMARK 465 ASN A 15 REMARK 465 THR A 16 REMARK 465 PRO A 17 REMARK 465 LEU A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 LEU A 21 REMARK 465 MSE A 22 REMARK 465 VAL A 23 REMARK 465 SER A 24 REMARK 465 ARG A 25 REMARK 465 LYS A 26 REMARK 465 LYS A 27 REMARK 465 PHE A 28 REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 TYR A 32 REMARK 465 VAL A 33 REMARK 465 TYR A 34 REMARK 465 ASP A 35 REMARK 465 ALA A 46 REMARK 465 GLU A 47 REMARK 465 GLN A 48 REMARK 465 MSE A 49 REMARK 465 GLU A 50 REMARK 465 GLN A 51 REMARK 465 LYS A 52 REMARK 465 LEU A 97 REMARK 465 ILE A 98 REMARK 465 ALA A 99 REMARK 465 PRO A 100 REMARK 465 GLN A 101 REMARK 465 VAL A 102 REMARK 465 ASP A 103 REMARK 465 GLY A 104 REMARK 465 ASN A 105 REMARK 465 THR A 106 REMARK 465 THR A 107 REMARK 465 VAL A 108 REMARK 465 GLU A 109 REMARK 465 ASN A 110 REMARK 465 TYR A 111 REMARK 465 GLU A 112 REMARK 465 HIS A 113 REMARK 465 ASP A 181 REMARK 465 GLY A 182 REMARK 465 LYS A 183 REMARK 465 ARG B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 ASP B 6 REMARK 465 ALA B 7 REMARK 465 TYR B 8 REMARK 465 TYR B 9 REMARK 465 SER B 10 REMARK 465 LYS B 11 REMARK 465 PHE B 12 REMARK 465 ALA B 13 REMARK 465 ASN B 14 REMARK 465 ASN B 15 REMARK 465 THR B 16 REMARK 465 PRO B 17 REMARK 465 LEU B 18 REMARK 465 PRO B 19 REMARK 465 ALA B 20 REMARK 465 LEU B 21 REMARK 465 MSE B 22 REMARK 465 VAL B 23 REMARK 465 SER B 24 REMARK 465 ARG B 25 REMARK 465 LYS B 26 REMARK 465 LYS B 27 REMARK 465 PHE B 28 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 SER B 31 REMARK 465 TYR B 32 REMARK 465 VAL B 33 REMARK 465 TYR B 34 REMARK 465 ASP B 35 REMARK 465 LYS B 36 REMARK 465 SER B 37 REMARK 465 TYR B 38 REMARK 465 LYS B 39 REMARK 465 THR B 40 REMARK 465 TRP B 41 REMARK 465 ASP B 42 REMARK 465 VAL B 43 REMARK 465 PRO B 44 REMARK 465 ILE B 45 REMARK 465 ALA B 46 REMARK 465 GLU B 47 REMARK 465 GLN B 48 REMARK 465 MSE B 49 REMARK 465 GLU B 50 REMARK 465 GLN B 51 REMARK 465 LYS B 52 REMARK 465 LYS B 96 REMARK 465 LEU B 97 REMARK 465 ILE B 98 REMARK 465 ALA B 99 REMARK 465 PRO B 100 REMARK 465 GLN B 101 REMARK 465 VAL B 102 REMARK 465 ASP B 103 REMARK 465 GLY B 104 REMARK 465 ASN B 105 REMARK 465 THR B 106 REMARK 465 THR B 107 REMARK 465 VAL B 108 REMARK 465 GLU B 109 REMARK 465 ASN B 110 REMARK 465 TYR B 111 REMARK 465 GLU B 112 REMARK 465 HIS B 113 REMARK 465 ASN B 114 REMARK 465 ASP B 181 REMARK 465 GLY B 182 REMARK 465 LYS B 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 389 O HOH B 243 8556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 79 138.48 -35.10 REMARK 500 TRP A 125 -14.51 78.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 320 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A 323 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH A 328 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 351 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A 355 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 374 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A 380 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH B 314 DISTANCE = 5.25 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC90180.1 RELATED DB: TARGETDB DBREF 2R2C A 1 183 UNP Q9S3Q1 Q9S3Q1_PORGI 108 290 DBREF 2R2C B 1 183 UNP Q9S3Q1 Q9S3Q1_PORGI 108 290 SEQRES 1 A 183 ARG THR GLU ALA GLY ASP ALA TYR TYR SER LYS PHE ALA SEQRES 2 A 183 ASN ASN THR PRO LEU PRO ALA LEU MSE VAL SER ARG LYS SEQRES 3 A 183 LYS PHE GLY SER SER TYR VAL TYR ASP LYS SER TYR LYS SEQRES 4 A 183 THR TRP ASP VAL PRO ILE ALA GLU GLN MSE GLU GLN LYS SEQRES 5 A 183 ALA LYS ILE ASN ILE PHE ALA VAL ALA GLU TYR THR ASP SEQRES 6 A 183 THR GLN LYS ILE LYS VAL THR VAL LYS GLY LYS ILE LEU SEQRES 7 A 183 GLU GLY ASN THR LEU PRO LYS SER MSE VAL GLN VAL TYR SEQRES 8 A 183 LEU LEU GLU ASP LYS LEU ILE ALA PRO GLN VAL ASP GLY SEQRES 9 A 183 ASN THR THR VAL GLU ASN TYR GLU HIS ASN HIS VAL LEU SEQRES 10 A 183 ARG GLY ALA VAL ASN GLY ILE TRP GLY GLU GLU PHE VAL SEQRES 11 A 183 ASN LEU LYS ASP TYR LEU TYR THR TYR ALA VAL GLU PRO SEQRES 12 A 183 LEU SER GLY MSE SER PHE VAL ALA GLU ASN TYR SER ILE SEQRES 13 A 183 VAL ALA PHE VAL TYR ASP VAL GLN THR PHE GLU VAL TYR SEQRES 14 A 183 ASP VAL VAL HIS VAL LYS ILE ASN PRO GLN SER ASP GLY SEQRES 15 A 183 LYS SEQRES 1 B 183 ARG THR GLU ALA GLY ASP ALA TYR TYR SER LYS PHE ALA SEQRES 2 B 183 ASN ASN THR PRO LEU PRO ALA LEU MSE VAL SER ARG LYS SEQRES 3 B 183 LYS PHE GLY SER SER TYR VAL TYR ASP LYS SER TYR LYS SEQRES 4 B 183 THR TRP ASP VAL PRO ILE ALA GLU GLN MSE GLU GLN LYS SEQRES 5 B 183 ALA LYS ILE ASN ILE PHE ALA VAL ALA GLU TYR THR ASP SEQRES 6 B 183 THR GLN LYS ILE LYS VAL THR VAL LYS GLY LYS ILE LEU SEQRES 7 B 183 GLU GLY ASN THR LEU PRO LYS SER MSE VAL GLN VAL TYR SEQRES 8 B 183 LEU LEU GLU ASP LYS LEU ILE ALA PRO GLN VAL ASP GLY SEQRES 9 B 183 ASN THR THR VAL GLU ASN TYR GLU HIS ASN HIS VAL LEU SEQRES 10 B 183 ARG GLY ALA VAL ASN GLY ILE TRP GLY GLU GLU PHE VAL SEQRES 11 B 183 ASN LEU LYS ASP TYR LEU TYR THR TYR ALA VAL GLU PRO SEQRES 12 B 183 LEU SER GLY MSE SER PHE VAL ALA GLU ASN TYR SER ILE SEQRES 13 B 183 VAL ALA PHE VAL TYR ASP VAL GLN THR PHE GLU VAL TYR SEQRES 14 B 183 ASP VAL VAL HIS VAL LYS ILE ASN PRO GLN SER ASP GLY SEQRES 15 B 183 LYS MODRES 2R2C MSE A 87 MET SELENOMETHIONINE MODRES 2R2C MSE A 147 MET SELENOMETHIONINE MODRES 2R2C MSE B 87 MET SELENOMETHIONINE MODRES 2R2C MSE B 147 MET SELENOMETHIONINE HET MSE A 87 8 HET MSE A 147 8 HET MSE B 87 8 HET MSE B 147 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *350(H2 O) HELIX 1 1 VAL A 150 GLU A 152 5 3 HELIX 2 2 VAL B 150 GLU B 152 5 3 SHEET 1 A 5 SER A 37 TYR A 38 0 SHEET 2 A 5 GLU B 167 ASN B 177 -1 O VAL B 168 N SER A 37 SHEET 3 A 5 TYR B 154 ASP B 162 -1 N ILE B 156 O VAL B 174 SHEET 4 A 5 SER B 86 GLU B 94 -1 N GLN B 89 O PHE B 159 SHEET 5 A 5 GLU B 127 GLU B 128 -1 O GLU B 127 N VAL B 88 SHEET 1 B 7 VAL B 116 ALA B 120 0 SHEET 2 B 7 SER B 86 GLU B 94 -1 N LEU B 92 O ARG B 118 SHEET 3 B 7 TYR B 154 ASP B 162 -1 O PHE B 159 N GLN B 89 SHEET 4 B 7 GLU B 167 ASN B 177 -1 O VAL B 174 N ILE B 156 SHEET 5 B 7 ILE B 55 ASP B 65 1 N TYR B 63 O ASN B 177 SHEET 6 B 7 LYS B 68 ILE B 77 -1 O LYS B 68 N THR B 64 SHEET 7 B 7 ASP B 134 ALA B 140 -1 O TYR B 135 N VAL B 73 SHEET 1 C 3 VAL A 116 ALA A 120 0 SHEET 2 C 3 SER A 86 GLU A 94 -1 N LEU A 92 O ARG A 118 SHEET 3 C 3 GLU A 127 GLU A 128 -1 O GLU A 127 N VAL A 88 SHEET 1 D 7 VAL A 116 ALA A 120 0 SHEET 2 D 7 SER A 86 GLU A 94 -1 N LEU A 92 O ARG A 118 SHEET 3 D 7 TYR A 154 ASP A 162 -1 O SER A 155 N LEU A 93 SHEET 4 D 7 VAL A 168 ASN A 177 -1 O VAL A 174 N ILE A 156 SHEET 5 D 7 ILE A 55 ASP A 65 1 N TYR A 63 O ASN A 177 SHEET 6 D 7 LYS A 68 ILE A 77 -1 O LYS A 68 N THR A 64 SHEET 7 D 7 TYR A 135 ALA A 140 -1 O TYR A 135 N VAL A 73 LINK C SER A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N VAL A 88 1555 1555 1.33 LINK C GLY A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N SER A 148 1555 1555 1.32 LINK C SER B 86 N MSE B 87 1555 1555 1.34 LINK C MSE B 87 N VAL B 88 1555 1555 1.32 LINK C GLY B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N SER B 148 1555 1555 1.32 CRYST1 77.831 110.342 90.730 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011022 0.00000