HEADER TRANSCRIPTION 03-SEP-07 2R5A TITLE CRYSTAL STRUCTURE OF THE TWO MBT REPEATS FROM SEX-COMB ON MIDLEG (SCM) TITLE 2 IN COMPLEX WITH METHYL LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN SCM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES:175-435; COMPND 5 SYNONYM: SEX COMB ON MIDLEG PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SCM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MBT REPEAT, POLYCOMB, SEX COMB ON MIDLEG, SCM, MBT, CHROMATIN KEYWDS 2 REGULATOR, DEVELOPMENTAL PROTEIN, METAL-BINDING, NUCLEUS, REPRESSOR, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.GRIMM,U.STEUERWALD,C.W.MUELLER REVDAT 6 21-FEB-24 2R5A 1 REMARK REVDAT 5 20-OCT-21 2R5A 1 REMARK SEQADV REVDAT 4 13-JUL-11 2R5A 1 VERSN REVDAT 3 24-FEB-09 2R5A 1 VERSN REVDAT 2 29-JAN-08 2R5A 1 JRNL REVDAT 1 30-OCT-07 2R5A 0 JRNL AUTH C.GRIMM,A.G.DE AYALA ALONSO,V.RYBIN,U.STEUERWALD, JRNL AUTH 2 N.LY-HARTIG,W.FISCHLE,J.MULLER,C.W.MULLER JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF METHYL-LYSINE BINDING JRNL TITL 2 BY THE MALIGNANT BRAIN TUMOUR REPEAT PROTEIN SEX COMB ON JRNL TITL 3 MIDLEG. JRNL REF EMBO REP. V. 8 1031 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17932512 JRNL DOI 10.1038/SJ.EMBOR.7401085 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 365 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 832 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.259 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.643 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1721 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2337 ; 1.303 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 5.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;31.986 ;24.819 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;15.630 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.594 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 241 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1353 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 730 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1157 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1097 ; 0.601 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1719 ; 0.980 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 723 ; 1.480 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 618 ; 2.313 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3970 -10.4660 -27.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.1794 REMARK 3 T33: -0.1840 T12: 0.1187 REMARK 3 T13: 0.0715 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 8.1547 L22: 12.9854 REMARK 3 L33: 7.2200 L12: -6.4182 REMARK 3 L13: -2.7714 L23: 3.5286 REMARK 3 S TENSOR REMARK 3 S11: 0.3654 S12: 0.0246 S13: 0.2948 REMARK 3 S21: 0.0657 S22: -0.1086 S23: -0.6211 REMARK 3 S31: 0.4000 S32: 1.1295 S33: -0.2567 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9790 3.8810 -11.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.0463 REMARK 3 T33: -0.0791 T12: -0.0880 REMARK 3 T13: 0.0285 T23: -0.0850 REMARK 3 L TENSOR REMARK 3 L11: 2.3511 L22: 2.0032 REMARK 3 L33: 2.1733 L12: -1.2982 REMARK 3 L13: -1.1732 L23: -0.2236 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: -0.4219 S13: 0.1611 REMARK 3 S21: -0.1654 S22: 0.1859 S23: -0.2210 REMARK 3 S31: -0.4371 S32: 0.0153 S33: -0.1618 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7510 0.7010 -11.1730 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.0700 REMARK 3 T33: -0.0920 T12: -0.0309 REMARK 3 T13: 0.0504 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 3.1973 L22: 1.0350 REMARK 3 L33: 2.7914 L12: -0.7184 REMARK 3 L13: -0.4896 L23: -0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0755 S12: -0.1634 S13: -0.1606 REMARK 3 S21: -0.2270 S22: 0.0912 S23: -0.2639 REMARK 3 S31: 0.0348 S32: 0.0459 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): -39.1540 12.1670 -12.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.0855 REMARK 3 T33: -0.1491 T12: 0.0542 REMARK 3 T13: 0.0004 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 4.3253 L22: 57.0706 REMARK 3 L33: 4.1984 L12: 14.6689 REMARK 3 L13: -3.1192 L23: -8.1642 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: -0.2808 S13: 0.3884 REMARK 3 S21: 0.1850 S22: 0.0502 S23: 0.4384 REMARK 3 S31: -0.4787 S32: -0.4724 S33: -0.1891 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): -47.4990 2.7110 -5.9850 REMARK 3 T TENSOR REMARK 3 T11: -0.1341 T22: 0.5164 REMARK 3 T33: -0.3356 T12: 0.1116 REMARK 3 T13: -0.1060 T23: 0.1426 REMARK 3 L TENSOR REMARK 3 L11: 23.3697 L22: 45.4703 REMARK 3 L33: 24.2800 L12: -0.5723 REMARK 3 L13: -1.8413 L23: 3.5309 REMARK 3 S TENSOR REMARK 3 S11: 0.5825 S12: -1.7916 S13: 0.0257 REMARK 3 S21: -0.8554 S22: 0.3933 S23: 1.6614 REMARK 3 S31: -1.3164 S32: -3.3707 S33: -0.9758 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 284 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): -29.0160 9.7010 -6.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: -0.0350 REMARK 3 T33: -0.1887 T12: -0.0080 REMARK 3 T13: 0.0403 T23: -0.1019 REMARK 3 L TENSOR REMARK 3 L11: 11.6868 L22: 4.0548 REMARK 3 L33: 8.4569 L12: -1.1225 REMARK 3 L13: -8.2490 L23: 1.0056 REMARK 3 S TENSOR REMARK 3 S11: 0.2455 S12: -0.7279 S13: 0.7759 REMARK 3 S21: 0.0822 S22: 0.0793 S23: -0.3810 REMARK 3 S31: -0.9559 S32: 0.2029 S33: -0.3248 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2690 -4.4700 -31.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1231 REMARK 3 T33: -0.1383 T12: 0.1239 REMARK 3 T13: 0.2031 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 3.3851 L22: 1.2117 REMARK 3 L33: 5.8782 L12: -1.8199 REMARK 3 L13: -0.1840 L23: 1.2690 REMARK 3 S TENSOR REMARK 3 S11: 0.6977 S12: 0.6042 S13: -0.0938 REMARK 3 S21: -0.2098 S22: -0.4716 S23: -0.3246 REMARK 3 S31: -0.3286 S32: 0.3402 S33: -0.2261 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8630 -12.3390 -27.6380 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.0521 REMARK 3 T33: -0.0679 T12: 0.0066 REMARK 3 T13: 0.0185 T23: -0.1255 REMARK 3 L TENSOR REMARK 3 L11: 5.9318 L22: 6.0294 REMARK 3 L33: 11.4694 L12: -0.7975 REMARK 3 L13: -2.2226 L23: -1.0495 REMARK 3 S TENSOR REMARK 3 S11: 0.2304 S12: 0.5872 S13: -0.4831 REMARK 3 S21: -0.4716 S22: -0.1982 S23: 0.3935 REMARK 3 S31: 0.9357 S32: -0.8160 S33: -0.0322 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 357 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5950 -2.9830 -27.5570 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.0971 REMARK 3 T33: -0.0625 T12: 0.0759 REMARK 3 T13: 0.1019 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 3.2858 L22: 3.4274 REMARK 3 L33: 6.4793 L12: 0.7491 REMARK 3 L13: -1.9856 L23: 1.1320 REMARK 3 S TENSOR REMARK 3 S11: 0.6054 S12: 0.4866 S13: 0.3377 REMARK 3 S21: -0.5058 S22: -0.3947 S23: -0.0351 REMARK 3 S31: -0.3285 S32: -0.2152 S33: -0.2107 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9840 -12.3000 -17.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.0825 REMARK 3 T33: -0.0501 T12: 0.0828 REMARK 3 T13: 0.0384 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 5.9515 L22: 3.0537 REMARK 3 L33: 9.8129 L12: -2.8566 REMARK 3 L13: 0.8404 L23: 1.4563 REMARK 3 S TENSOR REMARK 3 S11: 0.3243 S12: -0.2258 S13: -0.2882 REMARK 3 S21: 0.1693 S22: -0.2228 S23: -0.2821 REMARK 3 S31: 0.9768 S32: 0.5738 S33: -0.1015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12304 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.30 REMARK 200 R MERGE (I) : 0.07180 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 16.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG3350, 100 MM CALCIUM REMARK 280 ACETATE AND 3% ETHANOL, PH 7.3, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.89500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.51500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.84250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.51500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.94750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.51500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.51500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.84250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.51500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.51500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.94750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.89500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 171 REMARK 465 ALA A 172 REMARK 465 MET A 173 REMARK 465 SER A 386 REMARK 465 ARG A 387 REMARK 465 MET A 388 REMARK 465 ASP A 389 REMARK 465 SER A 390 REMARK 465 SER A 391 REMARK 465 SER A 392 REMARK 465 SER A 393 REMARK 465 LYS A 394 REMARK 465 GLN A 395 REMARK 465 ARG A 396 REMARK 465 CYS A 397 REMARK 465 PRO A 398 REMARK 465 ARG A 399 REMARK 465 PRO A 400 REMARK 465 ARG A 401 REMARK 465 TYR A 402 REMARK 465 THR A 403 REMARK 465 VAL A 404 REMARK 465 VAL A 405 REMARK 465 ALA A 406 REMARK 465 GLU A 407 REMARK 465 SER A 408 REMARK 465 GLU A 409 REMARK 465 ALA A 410 REMARK 465 MET A 411 REMARK 465 VAL A 412 REMARK 465 PRO A 413 REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 PRO A 416 REMARK 465 ALA A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 HIS A 420 REMARK 465 PHE A 421 REMARK 465 HIS A 422 REMARK 465 PRO A 423 REMARK 465 ASN A 424 REMARK 465 CYS A 425 REMARK 465 LYS A 426 REMARK 465 GLY A 427 REMARK 465 GLY A 428 REMARK 465 PRO A 429 REMARK 465 PHE A 430 REMARK 465 ILE A 431 REMARK 465 ASN A 432 REMARK 465 ASN A 433 REMARK 465 SER A 434 REMARK 465 LYS A 435 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 293 CG ASN A 293 OD1 0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 242 -116.83 -102.90 REMARK 500 ASP A 341 -106.88 58.61 REMARK 500 PRO A 382 150.18 -48.59 REMARK 500 HIS A 384 30.78 -91.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLZ A 436 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R57 RELATED DB: PDB REMARK 900 SAME PROTEIN APO FORM REMARK 900 RELATED ID: 2R58 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DI-METHYL LYSINE REMARK 900 RELATED ID: 2R5M RELATED DB: PDB REMARK 900 SAME PROTEIN WITH PEPTIDE R-(ME)K-S DBREF 2R5A A 175 435 UNP Q9VHA0 SCM_DROME 175 435 SEQADV 2R5A GLY A 171 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R5A ALA A 172 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R5A MET A 173 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R5A ALA A 174 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R5A CYS A 277 UNP Q9VHA0 ARG 277 ENGINEERED MUTATION SEQRES 1 A 265 GLY ALA MET ALA PHE ASP TRP ASP ALA TYR LEU GLU GLU SEQRES 2 A 265 THR GLY SER GLU ALA ALA PRO ALA LYS CYS PHE LYS GLN SEQRES 3 A 265 ALA GLN ASN PRO PRO ASN ASN ASP PHE LYS ILE GLY MET SEQRES 4 A 265 LYS LEU GLU ALA LEU ASP PRO ARG ASN VAL THR SER THR SEQRES 5 A 265 CYS ILE ALA THR VAL VAL GLY VAL LEU GLY SER ARG LEU SEQRES 6 A 265 ARG LEU ARG LEU ASP GLY SER ASP SER GLN ASN ASP PHE SEQRES 7 A 265 TRP ARG LEU VAL ASP SER THR GLU ILE HIS ALA ILE GLY SEQRES 8 A 265 HIS CYS GLU LYS ASN GLY GLY MET LEU GLN PRO PRO LEU SEQRES 9 A 265 GLY PHE CYS MET ASN ALA SER SER TRP PRO GLY TYR LEU SEQRES 10 A 265 CYS LYS ILE LEU ASN ASN ALA MET VAL ALA PRO GLU GLU SEQRES 11 A 265 ILE PHE GLN PRO GLU PRO PRO GLU PRO GLU GLU ASN LEU SEQRES 12 A 265 PHE LYS VAL GLY GLN LYS LEU GLU ALA VAL ASP LYS LYS SEQRES 13 A 265 ASN PRO GLN LEU ILE CYS CYS ALA THR VAL ASP ALA ILE SEQRES 14 A 265 LYS ASP ASP GLN ILE HIS VAL THR PHE ASP GLY TRP ARG SEQRES 15 A 265 GLY ALA PHE ASP TYR TRP CYS ASN TYR ARG SER ARG ASP SEQRES 16 A 265 ILE PHE PRO ALA GLY TRP CYS ALA ARG SER CYS HIS PRO SEQRES 17 A 265 MET GLN PRO PRO GLY HIS LYS SER ARG MET ASP SER SER SEQRES 18 A 265 SER SER LYS GLN ARG CYS PRO ARG PRO ARG TYR THR VAL SEQRES 19 A 265 VAL ALA GLU SER GLU ALA MET VAL PRO ALA SER PRO ALA SEQRES 20 A 265 THR ALA HIS PHE HIS PRO ASN CYS LYS GLY GLY PRO PHE SEQRES 21 A 265 ILE ASN ASN SER LYS HET MLZ A 436 11 HETNAM MLZ N-METHYL-LYSINE FORMUL 2 MLZ C7 H16 N2 O2 FORMUL 3 HOH *173(H2 O) HELIX 1 1 ASP A 176 THR A 184 1 9 HELIX 2 2 PRO A 190 PHE A 194 5 5 HELIX 3 3 GLY A 261 ASN A 266 1 6 HELIX 4 4 ASN A 279 SER A 281 5 3 HELIX 5 5 SER A 282 ASN A 292 1 11 HELIX 6 6 PRO A 298 PHE A 302 5 5 HELIX 7 7 ARG A 352 ASP A 356 5 5 HELIX 8 8 GLY A 370 CYS A 376 1 7 SHEET 1 A 5 PHE A 248 LEU A 251 0 SHEET 2 A 5 ARG A 234 LEU A 239 -1 N LEU A 237 O PHE A 248 SHEET 3 A 5 ASN A 218 LEU A 231 -1 N VAL A 228 O ARG A 236 SHEET 4 A 5 LYS A 210 ASP A 215 -1 N ALA A 213 O CYS A 223 SHEET 5 A 5 ILE A 257 HIS A 258 -1 O HIS A 258 N GLU A 212 SHEET 1 B 5 TYR A 357 ASN A 360 0 SHEET 2 B 5 GLN A 343 PHE A 348 -1 N VAL A 346 O TYR A 357 SHEET 3 B 5 ILE A 331 LYS A 340 -1 N ASP A 337 O HIS A 345 SHEET 4 B 5 LYS A 319 VAL A 323 -1 N ALA A 322 O CYS A 332 SHEET 5 B 5 ILE A 366 PHE A 367 -1 O PHE A 367 N GLU A 321 SITE 1 AC1 6 ASP A 324 ASN A 327 LEU A 330 PHE A 348 SITE 2 AC1 6 TRP A 351 HOH A 608 CRYST1 83.030 83.030 75.790 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013194 0.00000