HEADER TRANSCRIPTION 03-SEP-07 2R5F TITLE PUTATIVE SUGAR-BINDING DOMAIN OF TRANSCRIPTIONAL REGULATOR DEOR FROM TITLE 2 PSEUDOMONAS SYRINGAE PV. TOMATO COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PUTATIVE SUGAR-BINDING DOMAIN: RESIDUES 57-317; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO; SOURCE 3 ORGANISM_TAXID: 223283; SOURCE 4 STRAIN: DC3000; SOURCE 5 GENE: DEOR, PSPTO_2395; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TRANSCRIPTION REGULATOR, SUGAR-BINDING DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 PFAM04198, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,E.DUGGAN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 25-OCT-17 2R5F 1 REMARK REVDAT 3 13-JUL-11 2R5F 1 VERSN REVDAT 2 24-FEB-09 2R5F 1 VERSN REVDAT 1 18-SEP-07 2R5F 0 JRNL AUTH M.E.CUFF,E.DUGGAN,S.CLANCY,A.JOACHIMIAK JRNL TITL PUTATIVE SUGAR-BINDING DOMAIN OF TRANCSRIPTIONAL REGULATOR JRNL TITL 2 DEOR FROM PSEUDOMONAS SYRINGAE PV. TOMATO. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 13120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 658 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 732 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.84000 REMARK 3 B22 (A**2) : 1.84000 REMARK 3 B33 (A**2) : -3.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.430 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1670 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2250 ; 1.477 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 6.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;39.925 ;23.939 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;16.229 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;24.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1200 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 699 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1129 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 0.916 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1702 ; 1.306 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 626 ; 2.127 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 548 ; 3.200 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6446 18.7933 74.9177 REMARK 3 T TENSOR REMARK 3 T11: -0.1832 T22: -0.1205 REMARK 3 T33: -0.0818 T12: -0.0099 REMARK 3 T13: 0.0001 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.6204 L22: 2.1248 REMARK 3 L33: 7.5657 L12: 0.3060 REMARK 3 L13: -0.4263 L23: 0.3439 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: 0.0242 S13: 0.0768 REMARK 3 S21: 0.0027 S22: 0.0364 S23: -0.0506 REMARK 3 S31: -0.3588 S32: 0.0422 S33: -0.0731 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9093 6.9709 73.5901 REMARK 3 T TENSOR REMARK 3 T11: -0.0664 T22: -0.0947 REMARK 3 T33: -0.1110 T12: 0.0287 REMARK 3 T13: 0.0194 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.7381 L22: 1.9998 REMARK 3 L33: 6.1228 L12: -0.3976 REMARK 3 L13: 0.9824 L23: -1.0577 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.0068 S13: -0.0968 REMARK 3 S21: -0.0023 S22: -0.1515 S23: -0.1978 REMARK 3 S31: 0.7808 S32: 0.4433 S33: 0.1596 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907, 0.97921 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 2M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.39100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.58650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.19550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS POLYPEPTIDE REMARK 300 IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 54 REMARK 465 ASN A 55 REMARK 465 ALA A 56 REMARK 465 ARG A 57 REMARK 465 PRO A 58 REMARK 465 GLN A 133 REMARK 465 PRO A 134 REMARK 465 ASN A 151 REMARK 465 LYS A 152 REMARK 465 GLN A 178 REMARK 465 SER A 179 REMARK 465 ILE A 180 REMARK 465 GLU A 181 REMARK 465 GLN A 182 REMARK 465 SER A 183 REMARK 465 VAL A 184 REMARK 465 GLU A 185 REMARK 465 SER A 186 REMARK 465 LYS A 187 REMARK 465 PRO A 218 REMARK 465 SER A 219 REMARK 465 GLN A 220 REMARK 465 LEU A 221 REMARK 465 LEU A 222 REMARK 465 ARG A 223 REMARK 465 ASN A 224 REMARK 465 SER A 225 REMARK 465 GLY A 226 REMARK 465 ASN A 227 REMARK 465 TYR A 228 REMARK 465 TYR A 229 REMARK 465 THR A 230 REMARK 465 GLU A 231 REMARK 465 ASP A 232 REMARK 465 MSE A 233 REMARK 465 LEU A 234 REMARK 465 ARG A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 259 REMARK 465 GLU A 260 REMARK 465 GLU A 261 REMARK 465 ASP A 262 REMARK 465 GLU A 263 REMARK 465 GLU A 264 REMARK 465 PHE A 265 REMARK 465 GLY A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 188 O HOH A 420 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 177 C SER A 177 O 0.218 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 176 SER A 177 142.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC84820 RELATED DB: TARGETDB DBREF 2R5F A 57 317 UNP Q883G8 Q883G8_PSESM 57 317 SEQADV 2R5F SER A 54 UNP Q883G8 EXPRESSION TAG SEQADV 2R5F ASN A 55 UNP Q883G8 EXPRESSION TAG SEQADV 2R5F ALA A 56 UNP Q883G8 EXPRESSION TAG SEQRES 1 A 264 SER ASN ALA ARG PRO GLN GLY LEU HIS LEU GLU LEU GLU SEQRES 2 A 264 THR ARG LEU GLN LYS MSE TYR GLY ILE ARG GLN VAL ILE SEQRES 3 A 264 VAL VAL GLU ALA THR GLU PRO ASP ASP GLU GLU SER ILE SEQRES 4 A 264 LYS GLN ALA ILE GLY SER ALA ALA ALA HIS TYR LEU GLU SEQRES 5 A 264 THR SER LEU SER ALA GLN ASP HIS ILE GLY ILE SER SER SEQRES 6 A 264 TRP SER SER THR ILE ARG ALA MSE VAL SER HIS MSE HIS SEQRES 7 A 264 PRO GLN PRO GLY LYS GLN SER ALA GLN GLU VAL VAL GLN SEQRES 8 A 264 LEU LEU GLY GLY VAL GLY ASN LYS GLY ALA PHE GLU ALA SEQRES 9 A 264 THR LEU LEU THR GLN ARG LEU ALA THR LEU LEU ASN CYS SEQRES 10 A 264 PRO ALA PHE LEU LEU PRO SER GLN SER ILE GLU GLN SER SEQRES 11 A 264 VAL GLU SER LYS GLN ARG ILE VAL GLU MSE GLU GLU VAL SEQRES 12 A 264 LYS GLU VAL LEU HIS ARG PHE ASP SER ILE THR LEU ALA SEQRES 13 A 264 ILE VAL GLY ILE GLY GLU LEU GLU PRO SER GLN LEU LEU SEQRES 14 A 264 ARG ASN SER GLY ASN TYR TYR THR GLU ASP MSE LEU ARG SEQRES 15 A 264 VAL LEU ALA GLU ARG GLY ALA VAL GLY ASP ILE CYS LEU SEQRES 16 A 264 ARG TYR PHE ASP ALA GLN GLY LYS PRO VAL LEU GLU GLU SEQRES 17 A 264 ASP GLU GLU PHE VAL VAL SER MSE GLY LEU GLY LYS LEU SEQRES 18 A 264 ARG SER ILE ASN ARG VAL LEU GLY LEU ALA GLY GLY VAL SEQRES 19 A 264 ARG LYS VAL GLN ALA ILE LYS GLY ALA LEU LEU GLY GLY SEQRES 20 A 264 TYR LEU ASP VAL LEU ILE THR ASP VAL GLY THR ALA ARG SEQRES 21 A 264 GLY LEU GLY GLY MODRES 2R5F MSE A 72 MET SELENOMETHIONINE MODRES 2R5F MSE A 126 MET SELENOMETHIONINE MODRES 2R5F MSE A 130 MET SELENOMETHIONINE MODRES 2R5F MSE A 193 MET SELENOMETHIONINE MODRES 2R5F MSE A 269 MET SELENOMETHIONINE HET MSE A 72 8 HET MSE A 126 8 HET MSE A 130 8 HET MSE A 193 8 HET MSE A 269 8 HET SO4 A 1 5 HET SO4 A 2 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *108(H2 O) HELIX 1 1 HIS A 62 GLY A 74 1 13 HELIX 2 2 ASP A 88 LEU A 108 1 21 HELIX 3 3 SER A 120 HIS A 129 1 10 HELIX 4 4 GLY A 153 ASN A 169 1 17 HELIX 5 5 ILE A 190 PHE A 203 1 14 HELIX 6 6 GLY A 270 SER A 276 1 7 HELIX 7 7 GLY A 286 ARG A 288 5 3 HELIX 8 8 LYS A 289 GLY A 299 1 11 HELIX 9 9 VAL A 309 GLY A 316 1 8 SHEET 1 A 7 GLN A 77 VAL A 81 0 SHEET 2 A 7 VAL A 304 ASP A 308 1 O LEU A 305 N ILE A 79 SHEET 3 A 7 ARG A 279 LEU A 283 1 N GLY A 282 O VAL A 304 SHEET 4 A 7 LEU A 208 VAL A 211 1 N ALA A 209 O LEU A 281 SHEET 5 A 7 HIS A 113 ILE A 116 1 N GLY A 115 O ILE A 210 SHEET 6 A 7 GLU A 141 GLN A 144 1 O VAL A 143 N ILE A 114 SHEET 7 A 7 ALA A 172 PHE A 173 1 O PHE A 173 N GLN A 144 SHEET 1 B 2 LEU A 146 GLY A 147 0 SHEET 2 B 2 VAL A 267 SER A 268 -1 O VAL A 267 N GLY A 147 SHEET 1 C 3 GLY A 214 GLU A 215 0 SHEET 2 C 3 GLY A 244 ILE A 246 -1 O ASP A 245 N GLY A 214 SHEET 3 C 3 ARG A 249 PHE A 251 -1 O ARG A 249 N ILE A 246 LINK C LYS A 71 N MSE A 72 1555 1555 1.34 LINK C MSE A 72 N TYR A 73 1555 1555 1.33 LINK C ALA A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N VAL A 127 1555 1555 1.34 LINK C HIS A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N HIS A 131 1555 1555 1.33 LINK C GLU A 192 N MSE A 193 1555 1555 1.33 LINK C MSE A 193 N GLU A 194 1555 1555 1.33 LINK C SER A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N GLY A 270 1555 1555 1.34 SITE 1 AC1 6 SER A 120 SER A 121 THR A 122 LYS A 289 SITE 2 AC1 6 HOH A 330 HOH A 382 SITE 1 AC2 5 HIS A 62 GLU A 64 LEU A 65 ARG A 68 SITE 2 AC2 5 ARG A 313 CRYST1 42.112 42.112 144.782 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023746 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006907 0.00000