HEADER TRANSCRIPTION 04-SEP-07 2R5M TITLE CRYSTAL STRUCTURE OF THE TWO MBT REPEATS FROM SEX-COMB ON MIDLEG (SCM) TITLE 2 IN COMPLEX WITH PEPTIDE R-(ME)K-S COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN SCM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES:175-435; COMPND 5 SYNONYM: SEX COMB ON MIDLEG PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE R(ME)KS; COMPND 10 CHAIN: L; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SCM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS MBT REPEAT, POLYCOMB, SEX COMB ON MIDLEG, CHROMATIN REGULATOR, KEYWDS 2 DEVELOPMENTAL PROTEIN, METAL-BINDING, NUCLEUS, REPRESSOR, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.GRIMM,U.STEUERWALD,C.W.MUELLER REVDAT 5 20-OCT-21 2R5M 1 SEQADV LINK REVDAT 4 13-JUL-11 2R5M 1 VERSN REVDAT 3 24-FEB-09 2R5M 1 VERSN REVDAT 2 29-JAN-08 2R5M 1 JRNL REVDAT 1 30-OCT-07 2R5M 0 JRNL AUTH C.GRIMM,A.G.DE AYALA ALONSO,V.RYBIN,U.STEUERWALD, JRNL AUTH 2 N.LY-HARTIG,W.FISCHLE,J.MULLER,C.W.MULLER JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF METHYL-LYSINE BINDING JRNL TITL 2 BY THE MALIGNANT BRAIN TUMOUR REPEAT PROTEIN SEX COMB ON JRNL TITL 3 MIDLEG. JRNL REF EMBO REP. V. 8 1031 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17932512 JRNL DOI 10.1038/SJ.EMBOR.7401085 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 7531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 377 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 544 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.65000 REMARK 3 B22 (A**2) : 2.65000 REMARK 3 B33 (A**2) : -5.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.357 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.330 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1738 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2359 ; 2.303 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 6.526 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;33.565 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 278 ;17.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1366 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 800 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1174 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 137 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.241 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 0.856 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1735 ; 1.469 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 731 ; 2.319 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 624 ; 3.571 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3970 -10.4660 -27.0150 REMARK 3 T TENSOR REMARK 3 T11: -0.0146 T22: 0.1931 REMARK 3 T33: 0.0486 T12: -0.0677 REMARK 3 T13: 0.1052 T23: -0.1768 REMARK 3 L TENSOR REMARK 3 L11: 11.1071 L22: 23.1337 REMARK 3 L33: 10.2178 L12: -8.7856 REMARK 3 L13: -4.1015 L23: 2.8163 REMARK 3 S TENSOR REMARK 3 S11: 0.5040 S12: -0.2932 S13: 0.4249 REMARK 3 S21: -0.5606 S22: 0.0255 S23: -1.4945 REMARK 3 S31: -0.0833 S32: 1.8162 S33: -0.5294 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9790 3.8810 -11.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.0746 REMARK 3 T33: 0.0092 T12: -0.1235 REMARK 3 T13: 0.0449 T23: -0.1770 REMARK 3 L TENSOR REMARK 3 L11: 4.0336 L22: 3.1735 REMARK 3 L33: 3.1751 L12: -1.2287 REMARK 3 L13: -1.5464 L23: -0.3716 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.6967 S13: 0.5404 REMARK 3 S21: -0.2082 S22: 0.2479 S23: -0.6056 REMARK 3 S31: -0.3148 S32: 0.1640 S33: -0.2746 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7510 0.7010 -11.1730 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.0581 REMARK 3 T33: -0.1269 T12: -0.0594 REMARK 3 T13: 0.0131 T23: -0.1466 REMARK 3 L TENSOR REMARK 3 L11: 7.9403 L22: 5.4813 REMARK 3 L33: 3.0926 L12: -2.1375 REMARK 3 L13: -2.3527 L23: -0.0231 REMARK 3 S TENSOR REMARK 3 S11: -0.1500 S12: -0.5421 S13: 0.0174 REMARK 3 S21: -0.3729 S22: 0.1361 S23: -0.6406 REMARK 3 S31: -0.1775 S32: -0.0290 S33: 0.0139 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): -39.1540 12.1670 -12.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.1097 REMARK 3 T33: -0.0731 T12: -0.0313 REMARK 3 T13: 0.0565 T23: -0.1858 REMARK 3 L TENSOR REMARK 3 L11: 8.4851 L22: 45.9066 REMARK 3 L33: 5.2770 L12: 13.6642 REMARK 3 L13: -3.3637 L23: -11.8779 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: -0.7146 S13: 0.8307 REMARK 3 S21: 0.0871 S22: 0.5045 S23: 0.3284 REMARK 3 S31: -0.8959 S32: -0.0873 S33: -0.4485 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): -47.4990 2.7110 -5.9850 REMARK 3 T TENSOR REMARK 3 T11: -0.0185 T22: 0.6703 REMARK 3 T33: -0.2684 T12: 0.1490 REMARK 3 T13: -0.1495 T23: 0.1537 REMARK 3 L TENSOR REMARK 3 L11: 24.4502 L22: 29.1204 REMARK 3 L33: 19.0416 L12: 3.6428 REMARK 3 L13: -2.1775 L23: 11.3375 REMARK 3 S TENSOR REMARK 3 S11: 0.5832 S12: -2.4299 S13: 1.0140 REMARK 3 S21: -1.2310 S22: 0.0545 S23: 1.6066 REMARK 3 S31: -0.7514 S32: -3.1375 S33: -0.6378 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 284 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): -29.0160 9.7010 -6.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: -0.0381 REMARK 3 T33: 0.0327 T12: 0.0193 REMARK 3 T13: 0.0264 T23: -0.1743 REMARK 3 L TENSOR REMARK 3 L11: 12.0715 L22: 4.2895 REMARK 3 L33: 9.3675 L12: -0.3013 REMARK 3 L13: -7.5775 L23: 1.7336 REMARK 3 S TENSOR REMARK 3 S11: 0.4945 S12: -0.8512 S13: 1.0522 REMARK 3 S21: 0.0027 S22: 0.0117 S23: -0.6410 REMARK 3 S31: -1.4107 S32: 0.2452 S33: -0.5062 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2690 -4.4700 -31.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.2882 T22: -0.0153 REMARK 3 T33: 0.0605 T12: 0.0347 REMARK 3 T13: 0.2245 T23: -0.1130 REMARK 3 L TENSOR REMARK 3 L11: 8.5214 L22: 3.0598 REMARK 3 L33: 10.6786 L12: -4.0193 REMARK 3 L13: -0.3503 L23: 3.6884 REMARK 3 S TENSOR REMARK 3 S11: 0.6824 S12: 0.6984 S13: 0.4001 REMARK 3 S21: -0.9472 S22: -0.5482 S23: -0.4379 REMARK 3 S31: -1.2054 S32: 0.8124 S33: -0.1342 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8630 -12.3390 -27.6380 REMARK 3 T TENSOR REMARK 3 T11: -0.0023 T22: -0.0431 REMARK 3 T33: 0.0622 T12: 0.1117 REMARK 3 T13: 0.0145 T23: -0.1427 REMARK 3 L TENSOR REMARK 3 L11: 7.3808 L22: 7.8390 REMARK 3 L33: 19.3597 L12: -0.5088 REMARK 3 L13: -2.7054 L23: -1.7075 REMARK 3 S TENSOR REMARK 3 S11: 0.4176 S12: 0.6323 S13: -0.6131 REMARK 3 S21: -0.4980 S22: -0.0323 S23: 0.1559 REMARK 3 S31: 0.6716 S32: -0.8894 S33: -0.3853 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 357 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5950 -2.9830 -27.5570 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: -0.0112 REMARK 3 T33: 0.0836 T12: 0.0176 REMARK 3 T13: 0.1675 T23: -0.1178 REMARK 3 L TENSOR REMARK 3 L11: 2.8669 L22: 3.8249 REMARK 3 L33: 5.0292 L12: 2.1485 REMARK 3 L13: -0.7775 L23: 1.9725 REMARK 3 S TENSOR REMARK 3 S11: 0.7162 S12: 0.0381 S13: 0.4346 REMARK 3 S21: -0.5732 S22: -0.5770 S23: 0.1353 REMARK 3 S31: -0.8674 S32: 0.0877 S33: -0.1392 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9840 -12.3000 -17.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.0119 REMARK 3 T33: 0.1117 T12: 0.0785 REMARK 3 T13: 0.0214 T23: -0.0786 REMARK 3 L TENSOR REMARK 3 L11: 9.0056 L22: 6.8379 REMARK 3 L33: 15.0387 L12: -1.6662 REMARK 3 L13: 0.9019 L23: 1.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.5301 S12: -0.4590 S13: -0.3905 REMARK 3 S21: 0.4838 S22: -0.1493 S23: -0.5665 REMARK 3 S31: 0.8916 S32: 1.0971 S33: -0.3808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG3350, 100 MM CALCIUM REMARK 280 ACETATE AND 3% ETHANOL, PH 7.3, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.11500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.35500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.17250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.35500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.05750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.35500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.35500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.17250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.35500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.35500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.05750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.11500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 466 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 171 REMARK 465 ALA A 172 REMARK 465 MET A 173 REMARK 465 SER A 386 REMARK 465 ARG A 387 REMARK 465 MET A 388 REMARK 465 ASP A 389 REMARK 465 SER A 390 REMARK 465 SER A 391 REMARK 465 SER A 392 REMARK 465 SER A 393 REMARK 465 LYS A 394 REMARK 465 GLN A 395 REMARK 465 ARG A 396 REMARK 465 CYS A 397 REMARK 465 PRO A 398 REMARK 465 ARG A 399 REMARK 465 PRO A 400 REMARK 465 ARG A 401 REMARK 465 TYR A 402 REMARK 465 THR A 403 REMARK 465 VAL A 404 REMARK 465 VAL A 405 REMARK 465 ALA A 406 REMARK 465 GLU A 407 REMARK 465 SER A 408 REMARK 465 GLU A 409 REMARK 465 ALA A 410 REMARK 465 MET A 411 REMARK 465 VAL A 412 REMARK 465 PRO A 413 REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 PRO A 416 REMARK 465 ALA A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 HIS A 420 REMARK 465 PHE A 421 REMARK 465 HIS A 422 REMARK 465 PRO A 423 REMARK 465 ASN A 424 REMARK 465 CYS A 425 REMARK 465 LYS A 426 REMARK 465 GLY A 427 REMARK 465 GLY A 428 REMARK 465 PRO A 429 REMARK 465 PHE A 430 REMARK 465 ILE A 431 REMARK 465 ASN A 432 REMARK 465 ASN A 433 REMARK 465 SER A 434 REMARK 465 LYS A 435 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 525 O HOH A 601 2.05 REMARK 500 O HOH A 450 O HOH A 598 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 333 CB CYS A 333 SG -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 211 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 218 94.25 -161.77 REMARK 500 SER A 242 -113.14 -110.24 REMARK 500 ASN A 246 27.80 -142.71 REMARK 500 ASP A 341 -111.82 57.98 REMARK 500 PRO A 382 150.21 -49.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R57 RELATED DB: PDB REMARK 900 SAME PROTEIN APO FORM REMARK 900 RELATED ID: 2R58 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DI-METHYL LYSINE REMARK 900 RELATED ID: 2R5A RELATED DB: PDB REMARK 900 SAME PROTEIN WITH METHYL LYSINE DBREF 2R5M A 175 435 UNP Q9VHA0 SCM_DROME 175 435 DBREF 2R5M L 386 388 PDB 2R5M 2R5M 386 388 SEQADV 2R5M GLY A 171 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R5M ALA A 172 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R5M MET A 173 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R5M ALA A 174 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R5M CYS A 277 UNP Q9VHA0 ARG 277 ENGINEERED MUTATION SEQRES 1 A 265 GLY ALA MET ALA PHE ASP TRP ASP ALA TYR LEU GLU GLU SEQRES 2 A 265 THR GLY SER GLU ALA ALA PRO ALA LYS CYS PHE LYS GLN SEQRES 3 A 265 ALA GLN ASN PRO PRO ASN ASN ASP PHE LYS ILE GLY MET SEQRES 4 A 265 LYS LEU GLU ALA LEU ASP PRO ARG ASN VAL THR SER THR SEQRES 5 A 265 CYS ILE ALA THR VAL VAL GLY VAL LEU GLY SER ARG LEU SEQRES 6 A 265 ARG LEU ARG LEU ASP GLY SER ASP SER GLN ASN ASP PHE SEQRES 7 A 265 TRP ARG LEU VAL ASP SER THR GLU ILE HIS ALA ILE GLY SEQRES 8 A 265 HIS CYS GLU LYS ASN GLY GLY MET LEU GLN PRO PRO LEU SEQRES 9 A 265 GLY PHE CYS MET ASN ALA SER SER TRP PRO GLY TYR LEU SEQRES 10 A 265 CYS LYS ILE LEU ASN ASN ALA MET VAL ALA PRO GLU GLU SEQRES 11 A 265 ILE PHE GLN PRO GLU PRO PRO GLU PRO GLU GLU ASN LEU SEQRES 12 A 265 PHE LYS VAL GLY GLN LYS LEU GLU ALA VAL ASP LYS LYS SEQRES 13 A 265 ASN PRO GLN LEU ILE CYS CYS ALA THR VAL ASP ALA ILE SEQRES 14 A 265 LYS ASP ASP GLN ILE HIS VAL THR PHE ASP GLY TRP ARG SEQRES 15 A 265 GLY ALA PHE ASP TYR TRP CYS ASN TYR ARG SER ARG ASP SEQRES 16 A 265 ILE PHE PRO ALA GLY TRP CYS ALA ARG SER CYS HIS PRO SEQRES 17 A 265 MET GLN PRO PRO GLY HIS LYS SER ARG MET ASP SER SER SEQRES 18 A 265 SER SER LYS GLN ARG CYS PRO ARG PRO ARG TYR THR VAL SEQRES 19 A 265 VAL ALA GLU SER GLU ALA MET VAL PRO ALA SER PRO ALA SEQRES 20 A 265 THR ALA HIS PHE HIS PRO ASN CYS LYS GLY GLY PRO PHE SEQRES 21 A 265 ILE ASN ASN SER LYS SEQRES 1 L 3 ARG MLZ SER MODRES 2R5M MLZ L 387 LYS N-METHYL-LYSINE HET MLZ L 387 10 HETNAM MLZ N-METHYL-LYSINE FORMUL 2 MLZ C7 H16 N2 O2 FORMUL 3 HOH *173(H2 O) HELIX 1 1 ASP A 176 THR A 184 1 9 HELIX 2 2 PRO A 190 PHE A 194 5 5 HELIX 3 3 GLY A 261 ASN A 266 1 6 HELIX 4 4 ASN A 279 SER A 281 5 3 HELIX 5 5 SER A 282 ASN A 292 1 11 HELIX 6 6 PRO A 298 PHE A 302 5 5 HELIX 7 7 ARG A 352 ASP A 356 5 5 HELIX 8 8 GLY A 370 SER A 375 1 6 SHEET 1 A 5 PHE A 248 LEU A 251 0 SHEET 2 A 5 ARG A 234 LEU A 239 -1 N LEU A 237 O PHE A 248 SHEET 3 A 5 ASN A 218 LEU A 231 -1 N VAL A 228 O ARG A 236 SHEET 4 A 5 LYS A 210 ASP A 215 -1 N LEU A 211 O ALA A 225 SHEET 5 A 5 ILE A 257 HIS A 258 -1 O HIS A 258 N GLU A 212 SHEET 1 B 5 TYR A 357 ASN A 360 0 SHEET 2 B 5 GLN A 343 PHE A 348 -1 N ILE A 344 O CYS A 359 SHEET 3 B 5 ILE A 331 LYS A 340 -1 N THR A 335 O THR A 347 SHEET 4 B 5 LYS A 319 VAL A 323 -1 N ALA A 322 O CYS A 332 SHEET 5 B 5 ILE A 366 PHE A 367 -1 O PHE A 367 N GLU A 321 LINK C ARG L 386 N MLZ L 387 1555 1555 1.33 LINK C MLZ L 387 N SER L 388 1555 1555 1.33 CRYST1 82.710 82.710 76.230 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013118 0.00000